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Olaf_Ilzins's molecular_techniques [38 articles]

Recent papers added to Olaf_Ilzins's library classified by the tag molecular_techniques. You can also see everyone's molecular_techniques.
  • Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)
    Proceedings of the National Academy of Sciences (13 June 2008), 0712027105.
    by Jose M Gonzalez, Beatriz Fernandez-Gomez, Antoni Fernandez-Guerra, Laura Gomez-Consarnau, Olga Sanchez, Montserrat Coll-Llado, Del, Lorena Escudero, Raquel Rodriguez-Martinez, Laura Alonso-Saez, Mikel Latasa, Ian Paulsen, Olga Nedashkovskaya, Itziar Lekunberri, Jarone Pinhassi, Carlos Pedros-Alio
    posted to molecular_techniques metabolic_diversity biodegradation by Olaf_Ilzins on 2008-06-18 15:03:27 as ** along with 1 person jdelcampo
  • Comparisons of Different Hypervariable Regions of rrs Genes for Use in Fingerprinting of Microbial Communities by PCR-Denaturing Gradient Gel Electrophoresis
    Appl. Environ. Microbiol., Vol. 70, No. 8. (1 August 2004), pp. 4800-4806.
    by Zhongtang Yu, Mark Morrison
    posted to validation molecular_techniques microbial_diversity dgge 16s by Olaf_Ilzins on 2008-06-13 15:59:27 as **
  • Use of Single-Point Genome Signature Tags as a Universal Tagging Method for Microbial Genome Surveys
    Appl. Environ. Microbiol., Vol. 72, No. 3. (1 March 2006), pp. 2092-2101.
    by Daniel van der Lelie, Celine Lesaulnier, Sean Mccorkle, Joke Geets, Safiyh Taghavi, John Dunn
    posted to srts molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-06-10 15:37:19 as **
  • Use of 16S rRNA and rpoB Genes as Molecular Markers for Microbial Ecology Studies
    Appl. Environ. Microbiol., Vol. 73, No. 1. (1 January 2007), pp. 278-288.
    by Rebecca J Case, Yan Boucher, Ingela Dahllof, Carola Holmstrom, Ford W Doolittle, Staffan Kjelleberg
    posted to molecular_techniques microbial_diversity 16s by Olaf_Ilzins on 2008-06-09 16:02:23 as **
  • Development of a universal microarray based on the ligation detection reaction and 16S rrna gene polymorphism to target diversity of cyanobacteria.
    Appl Environ Microbiol, Vol. 70, No. 12. (December 2004), pp. 7161-7172.
    by B Castiglioni, E Rizzi, A Frosini, K Sivonen, P Rajaniemi, A Rantala, MA Mugnai, S Ventura, A Wilmotte, C Boutte, S Grubisic, P Balthasart, C Consolandi, R Bordoni, A Mezzelani, C Battaglia, G De Bellis
    posted to molecular_techniques microarray by Olaf_Ilzins on 2008-06-09 15:45:40 as ** along with 1 person stsaft
  • Accuracy and quality of massively-parallel DNA pyrosequencing
    Genome Biology, Vol. 8 (20 July 2007), R143.
    by Susan M Huse, Julie A Huber, Hilary G Morrison, Mitchell L Sogin, David M Welch
    posted to srts molecular_techniques by Olaf_Ilzins on 2008-06-04 16:48:06 as ** along with 7 people and 3 groups gpappas jmeppley mblwhoi grahamc azazello GustavoLacerda blobbybirdman Bioinformatics ParkinsonLab_at_MaRS gatech-compgenomics
  • A kinetic-based sigmoidal model for the polymerase chain reaction and its application to high-capacity absolute quantitative real-time PCR
    BMC Biotechnology, Vol. 8 (08 May 2008), 47.
    by Robert G Rutledge, Donald Stewart
    posted to validation rtime_pcr molecular_techniques by Olaf_Ilzins on 2008-06-04 16:12:25 as *
  • Quantitative multiplexing analysis of PCR-amplified ribosomal RNA genes by hierarchical oligonucleotide primer extension reaction
    Nucl. Acids Res., Vol. 35, No. 11. (28 June 2007), e82.
    by Jer-Horng Wu, Wen-Tso Liu
    posted to molecular_techniques microbial_diversity hope by Olaf_Ilzins on 2008-05-29 19:01:09 as **
  • Unbiased Whole-Genome Amplification Directly From Clinical Samples
    Genome Res., Vol. 13, No. 5. (1 May 2003), pp. 954-964.
    by Seiyu Hosono, Fawad A Faruqi, Frank B Dean, Yuefen Du, Zhenyu Sun, Xiaohong Wu, Jing Du, Stephen F Kingsmore, Michael Egholm, Roger S Lasken
    posted to molecular_techniques mda by Olaf_Ilzins on 2008-05-23 20:31:11 as ** along with 2 people and 2 groups echinotrix vaulot Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Unraveling the secret lives of bacteria: use of in vivo expression technology and differential fluorescence induction promoter traps as tools for exploring niche-specific gene expression.
    Microbiol Mol Biol Rev, Vol. 69, No. 2. (June 2005), pp. 217-261.
    by H Rediers, PB Rainey, J Vanderleyden, R De Mot
    posted to molecular_techniques by Olaf_Ilzins on 2008-05-06 21:25:55 as * along with 1 person bakakaj
  • Interpreting Ecological Diversity Indices Applied to Terminal Restriction Fragment Length Polymorphism Data: Insights from Simulated Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 16. (15 August 2007), pp. 5276-5283.
    by Christopher B Blackwood, Deborah Hudleston, Donald R Zak, Jeffrey S Buyer
    posted to validation statistics rflp molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-05-06 21:24:52 as **
  • Comparison of Two Fingerprinting Techniques, Terminal Restriction Fragment Length Polymorphism and Automated Ribosomal Intergenic Spacer Analysis, for Determination of Bacterial Diversity in Aquatic Environments
    Appl. Environ. Microbiol., Vol. 72, No. 9. (1 September 2006), pp. 5982-5989.
    by R Danovaro, GM Luna, A Dell'anno, B Pietrangeli
    posted to molecular_techniques microbial_diversity frlp arisa by Olaf_Ilzins on 2008-05-06 21:05:10 as **
  • Comparison of Different Primer Sets for Use in Automated Ribosomal Intergenic Spacer Analysis of Complex Bacterial Communities
    Appl. Environ. Microbiol., Vol. 70, No. 10. (1 October 2004), pp. 6147-6156.
    by Massimiliano Cardinale, Lorenzo Brusetti, Paola Quatrini, Sara Borin, Anna M Puglia, Aurora Rizzi, Elisabetta Zanardini, Claudia Sorlini, Cesare Corselli, Daniele Daffonchio
    posted to molecular_techniques microbial_diversity arisa by Olaf_Ilzins on 2008-05-06 21:04:26 as **
  • Status of the Microbial Census
    Microbiol. Mol. Biol. Rev., Vol. 68, No. 4. (1 December 2004), pp. 686-691.
    by Patrick D Schloss, Jo Handelsman
    posted to molecular_techniques microbial_diversity bacterial_taxonomy by Olaf_Ilzins on 2008-05-06 19:34:07 as *** along with 1 person mcox
  • Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.
    J Bacteriol, Vol. 186, No. 9. (May 2004), pp. 2629-2635.
    by SG Acinas, LA Marcelino, V Klepac-Ceraj, MF Polz
    posted to validation statistics molecular_techniques microbial_diversity bacterial_taxonomy 16s by Olaf_Ilzins on 2008-04-30 20:09:54 as ** along with 1 person mcox
  • Microbial diversity in the deep sea and the underexplored "rare biosphere"
    Proc Natl Acad Sci U S A (31 July 2006)
    by Mitchell L L Sogin, Hilary G G Morrison, Julie A A Huber, David Mark M Welch, Susan M M Huse, Phillip R R Neal, Jesus M M Arrieta, Gerhard J J Herndl
    posted to srts molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-04-29 20:38:17 as *** along with 8 people and 1 group mcox jmeppley balicea madhadron rabu bluto xingxu kinestetika microbiology_nijmegen
  • Unexpectedly High Bacterial Diversity in Arctic Tundra Relative to Boreal Forest Soils, Revealed by Serial Analysis of Ribosomal Sequence Tags
    Appl. Environ. Microbiol., Vol. 71, No. 10. (1 October 2005), pp. 5710-5718.
    by Josh D Neufeld, William W Mohn
    posted to srts molecular_techniques microbial_diversity by Olaf_Ilzins on 2008-04-29 20:27:39 as *** along with 1 person mcox
  • New Strategies for Cultivation and Detection of Previously Uncultured Microbes
    Appl. Environ. Microbiol., Vol. 70, No. 8. (1 August 2004), pp. 4748-4755.
    by Bradley S Stevenson, Stephanie A Eichorst, John T Wertz, Thomas M Schmidt, John A Breznak
    posted to molecular_techniques cultures by Olaf_Ilzins on 2008-04-29 15:27:28 as *** along with 2 people and 1 group jdelcampo rvgomes Microbial-Ecology
  • Assessment of the rind microbial diversity in a farmhouse-produced vs a pasteurized industrially produced soft red-smear cheese using both cultivation and rDNA-based methods
    Journal of Applied Microbiology, Vol. 97, No. 3. (2004), pp. 546-556.
    by C Feurer, F Irlinger, HE Spinnler, P Glaser, T Vallaeys
    posted to culturable_non_culturable_bias microbial_diversity molecular_techniques sscp by Olaf_Ilzins on 2008-04-18 21:23:45 as **
  • Bacterial Diversity and Community Structure in an Aerated Lagoon Revealed by Ribosomal Intergenic Spacer Analyses and 16S Ribosomal DNA Sequencing
    Appl. Environ. Microbiol., Vol. 67, No. 4. (1 April 2001), pp. 1565-1574.
    by Zhongtang Yu, William W Mohn
    posted to 23s microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 21:15:47 as **
  • Retrieval of entire genes from environmental DNA by inverse PCR with pre-amplification of target genes using primers containing locked nucleic acids
    Environmental Microbiology, Vol. 10, No. 4. (April 2008), pp. 978-987.
    by Yamada, Kazutaka, Terahara, Takeshi, Kurata, Shinya, Yokomaku, Toyokazu, Tsuneda, Satoshi, Harayama, Shigeaki
    posted to ipcr molecular_techniques by Olaf_Ilzins on 2008-04-18 21:07:59 as **
  • Comparative analysis of environmental DNA extraction and purification methods from different humic acid-rich soils
    Journal of applied Microbiology, Vol. 102 (2007), pp. 265-273.
    by FM Lakay, A Botha, BA Prior
    posted to molecular_techniques by Olaf_Ilzins on 2008-04-18 20:47:11 as ***
  • Reverse Sample Genome Probing, a New Technique for Identification of Bacteria in Environmental Samples by DNA Hybridization, and Its Application to the Identification of Sulfate-Reducing Bacteria in Oil Field Samples
    Appl. Environ. Microbiol., Vol. 57, No. 11. (1 November 1991), pp. 3070-3078.
    by Gerrit Voordouw, Johanna K Voordouw, Roxann R Karkhoff-Schweizer, Phillip M Fedorak, Donald W Westlake
    posted to molecular_techniques rsgp by Olaf_Ilzins on 2008-04-18 20:10:12 as **
  • Effect of Nitrate Injection on the Microbial Community in an Oil Field as Monitored by Reverse Sample Genome Probing
    Appl. Environ. Microbiol., Vol. 63, No. 5. (1 May 1997), pp. 1785-1793.
    by Aj Telang, S Ebert, Jm Foght, Dws Westlake, Ge Jenneman, D Gevertz, G Voordouw
    posted to microbial_diversity molecular_techniques rsgp by Olaf_Ilzins on 2008-04-18 20:01:13 as ** along with 1 person rabu
  • Recent advances in molecular techniques for the detection of phylogenetic markers and functional genes in microbial communities
    FEMS Microbiology Letters, Vol. 275, No. 2. (2007), pp. 183-190.
    by Stanley CK Lau, Wen T Liu
    posted to molecular_techniques review by Olaf_Ilzins on 2008-04-18 19:53:48 as ** along with 1 person and 1 group mjetten microbiology_nijmegen
  • Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set
    Microbiology, Vol. 148, No. 1. (1 January 2002), pp. 257-266.
    by Mangala A Nadkarni, Elizabeth F Martin, Nicholas A Jacques, Neil Hunter
    posted to molecular_techniques rtime_pcr by Olaf_Ilzins on 2008-04-18 19:27:04 as **
  • Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment
    Appl. Environ. Microbiol., Vol. 68, No. 10. (1 October 2002), pp. 5064-5081.
    by Alexander Loy, Angelika Lehner, Natuschka Lee, Justyna Adamczyk, Harald Meier, Jens Ernst, Karl-Heinz Schleifer, Michael Wagner
    posted to microarray microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 16:47:28 as **
  • 16S rRNA Gene-Based Oligonucleotide Microarray for Environmental Monitoring of the Betaproteobacterial Order "Rhodocyclales"
    Appl. Environ. Microbiol., Vol. 71, No. 3. (1 March 2005), pp. 1373-1386.
    by Alexander Loy, Claudia Schulz, Sebastian Lucker, Andreas Schopfer-Wendels, Kilian Stoecker, Christian Baranyi, Angelika Lehner, Michael Wagner
    posted to microarray microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 16:44:49 as **
  • Microarray and Functional Gene Analyses of Sulfate-Reducing Prokaryotes in Low-Sulfate, Acidic Fens Reveal Cooccurrence of Recognized Genera and Novel Lineages
    Appl. Environ. Microbiol., Vol. 70, No. 12. (1 December 2004), pp. 6998-7009.
    by Alexander Loy, Kirsten Kusel, Angelika Lehner, Harold L Drake, Michael Wagner
    posted to microarray microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 16:19:14 as *
  • Simultaneous analysis of microbial identity and function using NanoSIMS
    Environmental Microbiology, Vol. 0, No. 0. (0), pp. ???-???.
    by Tianlun Li, Ting Di Wu, Laurent Mazeas, Laurent Toffin, Jean, Gerard Leblon, Theodore Bouchez
    posted to microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-18 16:12:10 as ** along with 1 person and 1 group Katje microbiology_nijmegen
  • Assessment of Microbial Diversity in Four Southwestern United States Soils by 16S rRNA Gene Terminal Restriction Fragment Analysis
    Appl. Environ. Microbiol., Vol. 66, No. 7. (1 July 2000), pp. 2943-2950.
    by John Dunbar, Lawrence O Ticknor, Cheryl R Kuske
    posted to microbial_diversity molecular_techniques rflp by Olaf_Ilzins on 2008-04-18 15:23:53 as **
  • Phylogenetic Specificity and Reproducibility and New Method for Analysis of Terminal Restriction Fragment Profiles of 16S rRNA Genes from Bacterial Communities
    Appl. Environ. Microbiol., Vol. 67, No. 1. (1 January 2001), pp. 190-197.
    by John Dunbar, Lawrence O Ticknor, Cheryl R Kuske
    posted to microbial_diversity molecular_techniques rflp validation by Olaf_Ilzins on 2008-04-18 15:12:07 as **
  • Levels of Bacterial Community Diversity in Four Arid Soils Compared by Cultivation and 16S rRNA Gene Cloning
    Appl. Environ. Microbiol., Vol. 65, No. 4. (1 April 1999), pp. 1662-1669.
    by John Dunbar, Shannon Takala, Susan M Barns, Jody A Davis, Cheryl R Kuske
    posted to microbial_diversity molecular_techniques rflp by Olaf_Ilzins on 2008-04-18 14:25:46 as ** along with 1 person mcox
  • Serial Analysis of rRNA Genes and the Unexpected Dominance of Rare Members of Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 14. (15 July 2007), pp. 4532-4542.
    by Matthew N Ashby, Jasper Rine, Emmanuel F Mongodin, Karen E Nelson, Dago Dimster-Denk
    posted to microbial_diversity molecular_techniques srts by Olaf_Ilzins on 2008-04-17 21:47:18 as **
  • Radioisotopic, Culture-Based, and Oligonucleotide Microchip Analyses of Thermophilic Microbial Communities in a Continental High-Temperature Petroleum Reservoir
    Appl. Environ. Microbiol., Vol. 69, No. 10. (1 October 2003), pp. 6143-6151.
    by Elizaveta A Bonch-Osmolovskaya, Margarita L Miroshnichenko, Alexander V Lebedinsky, Nikolai A Chernyh, Tamara N Nazina, Valery S Ivoilov, Sergey S Belyaev, Eugenia S Boulygina, Yury P Lysov, Alexander N Perov, Andrei D Mirzabekov, Hans Hippe, Erko Stackebrandt, Stephane L'Haridon, Christian Jeanthon
    posted to culturable_non_culturable_bias cultures microbial_diversity molecular_techniques by Olaf_Ilzins on 2008-04-17 16:13:06 as *****
  • Evaluation of 23S rRNA PCR Primers for Use in Phylogenetic Studies of Bacterial Diversity.
    Appl Environ Microbiol, Vol. 72, No. 3. (March 2006), pp. 2221-2225.
    by DE Hunt, V Klepac-Ceraj, SG Acinas, C Gautier, S Bertilsson, MF Polz
    posted to 23s molecular_techniques by Olaf_Ilzins on 2008-04-17 15:59:43 as ***
  • Sequencing-Independent Method To Generate Oligonucleotide Probes Targeting a Variable Region in Bacterial 16S rRNA by PCR with Detachable Primers
    Appl. Environ. Microbiol., Vol. 68, No. 12. (1 December 2002), pp. 6077-6086.
    by Stefan Bertilsson, Colleen M Cavanaugh, Martin F Polz
    posted to molecular_techniques srts by Olaf_Ilzins on 2008-04-17 15:55:53 as ****
  • Serial analysis of ribosomal sequence tags (SARST): a high-throughput method for profiling complex microbial communities
    Environmental Microbiology, Vol. 6, No. 2. (2004), pp. 131-144.
    by JD Neufeld, Z Yu, W Lam, WW Mohn
    posted to molecular_techniques srts by Olaf_Ilzins on 2008-04-16 21:40:59 as read
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