OndrejMarsalek's library 57 articles Export

	Embedded divide-and-conquer algorithm on hierarchical real-space grids: parallel molecular dynamics simulation based on linear-scaling density functional theory [My Copy] Computer Physics Communications, Vol. 167, No. 3. (1 May 2005), pp. 151-164. by Fuyuki Shimojo, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta posted to xfer by OndrejMarsalek on 2008-04-28 19:16:02 as along with 1 person voronov
	\urlhttp://www.scons.org/ [My Copy] posted to masters web by OndrejMarsalek on 2008-04-16 05:41:22 as
	A new leapfrog integrator of rotational motion. The revised angular-momentum approach [My Copy] (18 Jan 1999) by Igor P. Omelyan posted to xfer by OndrejMarsalek on 2008-04-05 13:05:05 as
	Symplectic Numerical Methods for Hamiltonian Problems [My Copy] International Journal of Modern Physics C, Vol. 4 (1993), pp. 385-392. by J. M. Sanz-Serna, M. P. Calvo posted to algorithms masters numerics by OndrejMarsalek on 2008-04-04 14:49:07 as
	Canonical dynamics: Equilibrium phase-space distributions [My Copy] Physical Review A, Vol. 31, No. 3. (Mar 1985), pp. 1695-1697. by William G. Hoover posted to algorithms masters md by OndrejMarsalek on 2008-04-02 10:22:24 as along with 4 people sunnytov r2s2 stephenbond and_ped10
	Základy fysikálních měření (II)B (in Czech) [My Copy] (1974) by Jaromír Brož posted to masters by OndrejMarsalek on 2008-04-01 18:24:57 as
	\urlhttp://www.valgrind.org/ [My Copy] posted to masters web by OndrejMarsalek on 2008-03-31 18:00:52 as
	The Feynman Lectures on Physics [My Copy] Vol. 1 (1963) by Richard Feynman, Robert Leighton, Matthew Sands posted to book masters by OndrejMarsalek on 2008-03-30 20:23:39 as
	Potential calculation and some applications [My Copy] Methods Comput. Phys. (1970) by R. W. Hockney posted to algorithms masters by OndrejMarsalek on 2008-03-30 19:58:40 as
	A computer simulation method for the calculation of equilibrium constants for the formation of physical clusters of molecules: Application to small water clusters [My Copy] The Journal of Chemical Physics, Vol. 76, No. 1. (1982), pp. 637-649. by William C. Swope, Hans C. Andersen, Peter H. Berens, Kent R. Wilson posted to algorithms masters md numerics by OndrejMarsalek on 2008-03-30 19:31:14 as
	\urlhttp://matplotlib.sourceforge.net/ [My Copy] posted to masters web by OndrejMarsalek on 2008-03-30 15:13:17 as
	\urlhttp://www.open-mpi.org/ [My Copy] posted to masters web by OndrejMarsalek on 2008-03-30 14:50:40 as
	\urlhttp://www.tacc.utexas.edu/resources/software/#blas [My Copy] posted to masters web by OndrejMarsalek on 2008-03-30 14:47:25 as
	\urlhttp://www.cise.ufl.edu/research/sparse/umfpack/ [My Copy] posted to masters web by OndrejMarsalek on 2008-03-30 14:44:14 as
	\urlhttp://www.gnu.org/software/gsl/ [My Copy] posted to masters web by OndrejMarsalek on 2008-03-30 14:32:07 as
	Rozvoj metod počítačové fyziky pro fyziku plazmatu a fyziku tenkých vrstev (in Czech) [My Copy] (2006) by Jiří Šimek posted to masters by OndrejMarsalek on 2008-03-28 17:42:22 as
	Reversible multiple time scale molecular dynamics [My Copy] J. Chem. Phys., Vol. 97 (August 1992), pp. 1990-2001. by M. Tuckerman, B. J. Berne, G. J. Martyna posted to algorithms masters md numerics xfer by OndrejMarsalek on 2008-03-28 12:02:56 as
	"Green's Identities." From MathWorld---A Wolfram Web Resource. \urlhttp://mathworld.wolfram.com/GreensIdentities.html [My Copy] by Eric W. Weisstein posted to masters math web by OndrejMarsalek on 2008-03-25 19:15:45 as
	Mathematics for Physicists III, lecture material available at \urlhttp://www.karlin.mff.cuni.cz/~soucek/ (in Czech) [My Copy] by Vladimír Souček posted to masters math by OndrejMarsalek on 2008-03-25 18:38:26 as
	Partial Differential Equations [My Copy] (22 December 1994) by DiBenedetto, Emmanuele posted to book masters math by OndrejMarsalek on 2008-03-24 14:41:17 as
	Improving performance of multi-dimensional Particle-In-Cell codes for modelling of medium pressure plasma [My Copy] J. Phys.: Conf. Ser., Vol. 63, No. 1. (2007), 012009. by Z. Pekárek, M. Lahuta, R. Hrach posted to algorithms electrostatics masters plasma by OndrejMarsalek on 2008-03-24 13:35:49 as along with 1 person michaelbussmann
	Introduction to computer simulations: Monte-Carlo and molecular dynamics methods (in Czech) [My Copy] (2003) by I. Nezbeda, J. Kolafa, M. Kotrla posted to book masters mc md by OndrejMarsalek on 2008-03-20 22:17:34 as
	personal communication [My Copy] by D. Pražák posted to masters by OndrejMarsalek on 2008-03-18 22:54:26 as
	personal communication [My Copy] by Z. Pekárek posted to masters by OndrejMarsalek on 2008-03-18 22:53:07 as
	Particle simulation of plasmas: review and advances [My Copy] Plasma Physics and Controlled Fusion, Vol. 47, No. 5A. (2005), pp. A231-A260. by J. P. Verboncoeur posted to masters plasma by OndrejMarsalek on 2008-03-18 16:10:09 as
	Die Berechnung optischer und elektrostatischer Gitterpotentiale [My Copy] Annalen der Physik, Vol. 369, No. 3. (1921), pp. 253-287. by P. P. Ewald posted to algorithms electrostatics masters by OndrejMarsalek on 2008-03-18 12:46:16 as along with 2 people rpetrenko softsimu
	Computer Simulation of Liquids [My Copy] (29 June 1989) by M. P. Allen, D. J. Tildesley posted to book masters md by OndrejMarsalek on 2008-03-16 23:04:45 as along with 6 people horaciotm charris5 kkims agupta0318 mikaellund alexispaz
	Understanding Molecular Simulation, Second Edition: From Algorithms to Applications (Computational Science Series, Vol 1) [My Copy] (07 November 2001) by Daan Frenkel, B. Smit posted to book masters md by OndrejMarsalek on 2008-03-16 23:03:20 as along with 6 people pjkiley georgwachter charris5 kkims ptupper mikaellund
	A fast algorithm for particle simulations [My Copy] Journal of Computational Physics, Vol. 73, No. 2. (December 1987), pp. 325-348. by L. Greengard, V. Rokhlin posted to algorithms electrostatics masters plasma treecode by OndrejMarsalek on 2008-03-16 20:23:13 as along with 3 people apaydin eyliu tlmquintino
	Condensed Matter Theory II, lecture at MFF UK, material available from the author (in Czech) [My Copy] (2007) by P. Lipavský posted to lecture masters sf by OndrejMarsalek on 2008-03-16 13:30:21 as
	Langmuir probe technique [My Copy] General Electric Rev, Vol. 27 (1924) by I. Langmuir, Mott H. Smith posted to masters plasma by OndrejMarsalek on 2008-03-15 21:28:58 as
	Plasma Theory, lecture at MFF UK, material available from the author [My Copy] (2005) by L. Krlín posted to lecture masters plasma by OndrejMarsalek on 2008-03-05 11:43:28 as
	Introduction to Plasma Physics [My Copy] (1974) by Francis F. Chen posted to masters plasma by OndrejMarsalek on 2008-03-01 18:04:19 as
	An Unsymmetric-Pattern Multifrontal Method for Sparse LU Factorization [My Copy] SIAM Journal on Matrix Analysis and Applications, Vol. 18, No. 1. (1997), pp. 140-158. by Timothy A. Davis, Iain S. Duff posted to masters numerics by OndrejMarsalek on 2008-03-01 17:55:51 as along with 1 person endersdouble
	A combined unifrontal/multifrontal method for unsymmetric sparse matrices [My Copy] ACM Trans. Math. Softw., Vol. 25, No. 1. (March 1999), pp. 1-20. by Timothy A. Davis, Iain S. Duff posted to masters numerics by OndrejMarsalek on 2008-03-01 17:54:05 as
	Algorithm 832: UMFPACK V4.3---an unsymmetric-pattern multifrontal method [My Copy] ACM Trans. Math. Softw., Vol. 30, No. 2. (June 2004), pp. 196-199. by Timothy A. Davis posted to masters numerics by OndrejMarsalek on 2008-03-01 17:52:50 as along with 2 people fantaace bamberg
	A column pre-ordering strategy for the unsymmetric-pattern multifrontal method [My Copy] ACM Trans. Math. Softw., Vol. 30, No. 2. (June 2004), pp. 165-195. by Timothy A. Davis posted to masters numerics by OndrejMarsalek on 2008-03-01 17:51:57 as
	A Modified Tree Code Don't Laugh: It Runs [My Copy] Journal of Computational Physics, Vol. 87 (March 1990), 161. by J. E. Barnes posted to algorithms masters treecode by OndrejMarsalek on 2008-02-28 16:37:42 as along with 1 person z0cz0c
	An Efficient Program for Many-Body Simulation [My Copy] SIAM Journal on Scientific and Statistical Computing, Vol. 6, No. 1. (1985), pp. 85-103. by Andrew W. Appel posted to algorithms electrostatics masters plasma treecode by OndrejMarsalek on 2008-02-28 16:23:43 as along with 1 person onufriev
	P3M3DP-The three-dimensional periodic particle-particle/ particle-mesh program [My Copy] Computer Physics Communications, Vol. 19 (April 1980), pp. 215-261. by J. W. Eastwood, R. W. Hockney, D. N. Lawrence posted to algorithms electrostatics masters plasma by OndrejMarsalek on 2008-02-28 16:09:37 as along with 1 person michaelbussmann
	A treecode algorithm for simulating electron dynamics in a Penning-Malmberg trap [My Copy] Computer Physics Communications In Proceedings of the 18th International Conferene on the Numerical Simulation of Plasmas, Vol. 164, No. 1-3., pp. 306-310. by A. J. Christlieb, R. Krasny, J. P. Verboncoeur posted to algorithms electrostatics masters plasma treecode by OndrejMarsalek on 2008-02-28 15:59:43 as
	Computer "Experiments" on Classical Fluids. I. Thermodynamical Properties of Lennard-Jones Molecules [My Copy] Physical Review Online Archive (Prola), Vol. 159, No. 1. (5 Jul 1967), 98. by Loup Verlet posted to algorithms masters md numerics by OndrejMarsalek on 2008-02-28 15:49:30 as along with 6 people dsmueller georgwachter stephenbond theschwartz and_ped10 maburkitt
	Some Multistep Methods for Use in Molecular Dynamics Calculations [My Copy] Journal of Computational Physics, Vol. 20 (February 1976), 130. by D. Beeman posted to algorithms masters md numerics by OndrejMarsalek on 2008-02-28 15:48:02 as
	Numerical recipes : the art of scientific computing [My Copy] (10 August 2007) by William H. Press, Saul A. Teukolsky, William T. Vetterling, Brian P. Flannery posted to algorithms book masters numerics by OndrejMarsalek on 2008-02-16 19:48:02 as along with 20 people and 1 group flips vmarceau hans_meine anna_yershova nmdang alucke alvarolozano mairr ddahlem jdserna mshafiei 6rheology mmeteo harish Zaphod seana sobolevnrm ansobol diancu wvangeit baker-group
	Molecular dynamics simulations at constant pressure and/or temperature [My Copy] The Journal of Chemical Physics, Vol. 72, No. 4. (1980), pp. 2384-2393. by Hans C. Andersen posted to algorithms masters md by OndrejMarsalek on 2008-02-15 22:42:30 as along with 4 people Lombardo_7 tomweingarten and_ped10 6rheology
	Computer Simulation Using Particles [My Copy] (01 January 1988) by R. W. Hockney, J. W. Eastwood posted to algorithms book electrostatics masters plasma by OndrejMarsalek on 2008-02-12 12:13:42 as along with 1 person michaelbussmann
	Plasma Physics via Computer Simulation (Series on Plasma Physics) [My Copy] (01 January 1991) by C. K. Birdsall, Langdon posted to algorithms book electrostatics masters plasma by OndrejMarsalek on 2008-02-12 10:29:21 as
	Faunus: An object oriented framework for molecular simulation. [My Copy] Source code for biology and medicine, Vol. 3, No. 1. (1 February 2008) by M. Lund, M. Trulsson, B. Persson posted to algorithms software by OndrejMarsalek on 2008-02-06 18:33:11 as along with 3 people flbarroso mikaellund GeeSharpMinor
	Local electrostatics algorithm for classical molecular dynamics simulations [My Copy] The Journal of Chemical Physics, Vol. 127, No. 13. (2007), 134104. by Jörg Rottler posted to algorithms electrostatics md by OndrejMarsalek on 2008-02-06 10:13:26 as along with 5 people and 1 group sobolevnrm afenley softsimu mikaellund michaelbussmann baker-group
	Averaged Configurations from Molecular Dynamics Simulations [My Copy] Applied Parallel Computing. State of the Art in Scientific Computing (2007), pp. 51-58. by K. Gillis, J. Vatamanu, M. Razul, Peter Kusalik posted to algorithms md by OndrejMarsalek on 2008-02-05 11:20:08 as along with 1 person michaelbussmann