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OndrejMarsalek's library [67 articles]

Recent papers added to OndrejMarsalek's library.
  • Embedded divide-and-conquer algorithm on hierarchical real-space grids: parallel molecular dynamics simulation based on linear-scaling density functional theory
    Computer Physics Communications, Vol. 167, No. 3. (1 May 2005), pp. 151-164.
    by Fuyuki Shimojo, Rajiv K Kalia, Aiichiro Nakano, Priya Vashishta
    posted to check by OndrejMarsalek on 2008-04-28 19:16:02 as **** along with 1 person voronov
  • \urlhttp://www.scons.org/
    posted to masters web by OndrejMarsalek on 2008-04-16 05:41:22 as read
  • A new leapfrog integrator of rotational motion. The revised angular-momentum approach
    (18 Jan 1999)
    by Igor P Omelyan
    posted to check by OndrejMarsalek on 2008-04-05 13:05:05 as ***
  • Symplectic Numerical Methods for Hamiltonian Problems
    International Journal of Modern Physics C, Vol. 4 (1993), pp. 385-392.
    by JM Sanz-Serna, MP Calvo
    posted to algorithms masters numerics by OndrejMarsalek on 2008-04-04 14:49:07 as read
  • notes Canonical dynamics: Equilibrium phase-space distributions
    Physical Review A, Vol. 31, No. 3. (March 1985), 1695.
    by William G Hoover
    posted to algorithms masters md by OndrejMarsalek on 2008-04-02 10:22:24 as **** along with 1 person and_ped10
  • Základy fysikálních měření (II)B (in Czech)
    (1974)
    by Jaromír Brož
    posted to masters by OndrejMarsalek on 2008-04-01 18:24:57 as *
  • \urlhttp://www.valgrind.org/
    posted to masters web by OndrejMarsalek on 2008-03-31 18:00:52 as read
  • The Feynman Lectures on Physics
    Vol. 1 (1963)
    by Richard Feynman, Robert Leighton, Matthew Sands
    posted to book masters by OndrejMarsalek on 2008-03-30 20:23:39 as read
  • notes Potential calculation and some applications
    Methods Comput. Phys. (1970)
    by RW Hockney
    posted to algorithms masters by OndrejMarsalek on 2008-03-30 19:58:40 as *
  • notes A computer simulation method for the calculation of equilibrium constants for the formation of physical clusters of molecules: Application to small water clusters
    The Journal of Chemical Physics, Vol. 76, No. 1. (1982), pp. 637-649.
    by William C Swope, Hans C Andersen, Peter H Berens, Kent R Wilson
    posted to algorithms masters md numerics by OndrejMarsalek on 2008-03-30 19:31:14 as **
  • \urlhttp://matplotlib.sourceforge.net/
    posted to masters web by OndrejMarsalek on 2008-03-30 15:13:17 as read
  • \urlhttp://www.open-mpi.org/
    posted to masters web by OndrejMarsalek on 2008-03-30 14:50:40 as read
  • \urlhttp://www.tacc.utexas.edu/resources/software/#blas
    posted to masters web by OndrejMarsalek on 2008-03-30 14:47:25 as read
  • \urlhttp://www.cise.ufl.edu/research/sparse/umfpack/
    posted to masters web by OndrejMarsalek on 2008-03-30 14:44:14 as read
  • \urlhttp://www.gnu.org/software/gsl/
    posted to masters web by OndrejMarsalek on 2008-03-30 14:32:07 as read
  • Statistical thermodynamics in the classical molecular dynamics ensemble. III. Numerical results
    The Journal of Chemical Physics, Vol. 100, No. 4. (1994), pp. 3068-3078.
    by Rolf Lustig
    posted to check by OndrejMarsalek on 2008-03-29 14:54:27 as ****
  • Rozvoj metod počítačové fyziky pro fyziku plazmatu a fyziku tenkých vrstev (in Czech)
    (2006)
    by Jiří Šimek
    posted to masters by OndrejMarsalek on 2008-03-28 17:42:22 as read
  • Reversible multiple time scale molecular dynamics
    J. Chem. Phys., Vol. 97 (August 1992), pp. 1990-2001.
    by M Tuckerman, BJ Berne, GJ Martyna
    posted to algorithms masters md numerics by OndrejMarsalek on 2008-03-28 12:02:56 as read
  • "Green's Identities." From MathWorld---A Wolfram Web Resource. \urlhttp://mathworld.wolfram.com/GreensIdentities.html
    by Eric W Weisstein
    posted to masters math web by OndrejMarsalek on 2008-03-25 19:15:45 as read
  • Mathematics for Physicists III, lecture material available at \urlhttp://www.karlin.mff.cuni.cz/~soucek/ (in Czech)
    by Vladimír Souček
    posted to masters math by OndrejMarsalek on 2008-03-25 18:38:26 as read
  • Partial Differential Equations
    (22 December 1994)
    by DiBenedetto, Emmanuele
    posted to book masters math by OndrejMarsalek on 2008-03-24 14:41:17 as *
  • Improving performance of multi-dimensional Particle-In-Cell codes for modelling of medium pressure plasma
    J. Phys.: Conf. Ser., Vol. 63, No. 1. (2007), 012009.
    by Z Pekárek, M Lahuta, R Hrach
    posted to algorithms electrostatics masters plasma by OndrejMarsalek on 2008-03-24 13:35:49 as read
  • Introduction to computer simulations: Monte-Carlo and molecular dynamics methods (in Czech)
    (2003)
    by I Nezbeda, J Kolafa, M Kotrla
    posted to book masters mc md by OndrejMarsalek on 2008-03-20 22:17:34 as read
  • personal communication
    by D Pražák
    posted to masters by OndrejMarsalek on 2008-03-18 22:54:26 as read
  • personal communication
    by Z Pekárek
    posted to masters by OndrejMarsalek on 2008-03-18 22:53:07 as read
  • Particle simulation of plasmas: review and advances
    Plasma Physics and Controlled Fusion, Vol. 47, No. 5A. (2005), pp. A231-A260.
    by JP Verboncoeur
    posted to masters plasma by OndrejMarsalek on 2008-03-18 16:10:09 as read
  • Die Berechnung optischer und elektrostatischer Gitterpotentiale
    Annalen der Physik, Vol. 369, No. 3. (1921), pp. 253-287.
    by PP Ewald
    posted to algorithms electrostatics masters by OndrejMarsalek on 2008-03-18 12:46:16 as * along with 1 person softsimu
  • Computer Simulation of Liquids
    (29 June 1989)
    by MP Allen, DJ Tildesley
    posted to book masters md by OndrejMarsalek on 2008-03-16 23:04:45 as *** along with 3 people kkims agupta0318 mikaellund
  • Understanding Molecular Simulation (Computational Science Series, Vol 1)
    (15 October 2001)
    by Daan Frenkel, B Smit
    posted to book masters md by OndrejMarsalek on 2008-03-16 23:03:20 as *** along with 3 people kkims ptupper mikaellund
  • A fast algorithm for particle simulations
    Journal of Computational Physics, Vol. 73, No. 2. (December 1987), pp. 325-348.
    by L Greengard, V Rokhlin
    posted to algorithms electrostatics masters plasma treecode by OndrejMarsalek on 2008-03-16 20:23:13 as read along with 2 people eyliu tlmquintino
  • Condensed Matter Theory II, lecture at MFF UK, material available from the author (in Czech)
    (2007)
    by P Lipavský
    posted to lecture masters sf by OndrejMarsalek on 2008-03-16 13:30:21 as read
  • Langmuir probe technique
    General Electric Rev, Vol. 27 (1924)
    by I Langmuir, Mott H Smith
    posted to masters plasma by OndrejMarsalek on 2008-03-15 21:28:58 as *
  • Plasma Theory, lecture at MFF UK, material available from the author
    (2005)
    by L Krlín
    posted to lecture masters plasma by OndrejMarsalek on 2008-03-05 11:43:28 as read
  • Introduction to Plasma Physics
    (1974)
    by Francis F Chen
    posted to masters plasma by OndrejMarsalek on 2008-03-01 18:04:19 as read
  • notes An Unsymmetric-Pattern Multifrontal Method for Sparse LU Factorization
    SIAM Journal on Matrix Analysis and Applications, Vol. 18, No. 1. (1997), pp. 140-158.
    by Timothy A Davis, Iain S Duff
    posted to masters numerics by OndrejMarsalek on 2008-03-01 17:55:51 as *
  • notes A combined unifrontal/multifrontal method for unsymmetric sparse matrices
    ACM Trans. Math. Softw., Vol. 25, No. 1. (March 1999), pp. 1-20.
    by Timothy A Davis, Iain S Duff
    posted to masters numerics by OndrejMarsalek on 2008-03-01 17:54:05 as *
  • notes Algorithm 832: UMFPACK V4.3---an unsymmetric-pattern multifrontal method
    ACM Trans. Math. Softw., Vol. 30, No. 2. (June 2004), pp. 196-199.
    by Timothy A Davis
    posted to masters numerics by OndrejMarsalek on 2008-03-01 17:52:50 as * along with 1 person bamberg
  • notes A column pre-ordering strategy for the unsymmetric-pattern multifrontal method
    ACM Trans. Math. Softw., Vol. 30, No. 2. (June 2004), pp. 165-195.
    by Timothy A Davis
    posted to masters numerics by OndrejMarsalek on 2008-03-01 17:51:57 as *
  • Harvesting graphics power for MD simulations
    (20 Sep 2007)
    by JA van Meel, A Arnold, D Frenkel, Portegies SF Zwart, RG Belleman
    posted to cuda md software by OndrejMarsalek on 2008-03-01 17:40:55 as ****
  • Accelerating molecular modeling applications with graphics processors.
    J Comput Chem (25 September 2007)
    by John E E Stone, James C C Phillips, Peter L L Freddolino, David J J Hardy, Leonardo G G Trabuco, Klaus Schulten
    posted to cuda electrostatics md software by OndrejMarsalek on 2008-03-01 17:38:55 as **** along with 5 people and 1 group BragilMassoud ruvido sobolevnrm yalexeev mikaellund baker-group
  • Molecular Dynamics Simulations on Commodity GPUs with CUDA
    High Performance Computing – HiPC 2007 (2007), pp. 185-196.
    by Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang Müller-Wittig
    posted to cuda md software by OndrejMarsalek on 2008-03-01 17:35:33 as **** along with 1 person stumbled
  • General Purpose Molecular Dynamics Simulations Fully Implemented on Graphics Processing Units
    Journal of Computational Physics, Vol. In Press, Accepted Manuscript
    by Joshua A Anderson, Chris D Lorenz, A Travesset
    posted to cuda md software by OndrejMarsalek on 2008-03-01 17:34:33 as ****
  • notes A Modified Tree Code Don't Laugh: It Runs
    Journal of Computational Physics, Vol. 87 (March 1990), 161.
    by JE Barnes
    posted to algorithms masters treecode by OndrejMarsalek on 2008-02-28 16:37:42 as **
  • An Efficient Program for Many-Body Simulation
    SIAM Journal on Scientific and Statistical Computing, Vol. 6, No. 1. (1985), pp. 85-103.
    by Andrew W Appel
    posted to algorithms electrostatics masters plasma treecode by OndrejMarsalek on 2008-02-28 16:23:43 as **
  • notes P3M3DP-The three-dimensional periodic particle-particle/ particle-mesh program
    Computer Physics Communications, Vol. 19 (April 1980), pp. 215-261.
    by JW Eastwood, RW Hockney, DN Lawrence
    posted to algorithms electrostatics masters plasma by OndrejMarsalek on 2008-02-28 16:09:37 as ** along with 1 person michaelbussmann
  • notes A treecode algorithm for simulating electron dynamics in a Penning-Malmberg trap
    Computer Physics Communications, Vol. 164, No. 1-3., pp. 306-310.
    by AJ Christlieb, R Krasny, JP Verboncoeur
    posted to algorithms electrostatics masters plasma treecode by OndrejMarsalek on 2008-02-28 15:59:43 as read
  • notes Computer "Experiments" on Classical Fluids. I. Thermodynamical Properties of Lennard-Jones Molecules
    Physical Review, Vol. 159, No. 1. (5 July 1967), 98.
    by Loup Verlet
    posted to algorithms masters md numerics by OndrejMarsalek on 2008-02-28 15:49:30 as read along with 1 person and_ped10
  • notes Some Multistep Methods for Use in Molecular Dynamics Calculations
    Journal of Computational Physics, Vol. 20 (February 1976), 130.
    by D Beeman
    posted to algorithms masters md numerics by OndrejMarsalek on 2008-02-28 15:48:02 as **
  • Numerical Recipes: The Art of Scientific Computing
    (01 August 2007)
    by William H Press, Saul A Teukolsky, William T Vetterling, Brian P Flannery
    posted to algorithms book masters numerics by OndrejMarsalek on 2008-02-16 19:48:02 as ** along with 7 people and 1 group sobolevnrm mshafiei 6rheology mmeteo chitah Zaphod seana baker-group
  • Molecular dynamics simulations at constant pressure and/or temperature
    The Journal of Chemical Physics, Vol. 72, No. 4. (1980), pp. 2384-2393.
    by Hans C Andersen
    posted to algorithms masters md by OndrejMarsalek on 2008-02-15 22:42:30 as read along with 1 person and_ped10
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