Pao-Yang's library 59 articles Export

	The third chemotaxis locus of Rhodobacter sphaeroides is essential for chemotaxis. [My Copy] Mol Microbiol, Vol. 46, No. 4. (November 2002), pp. 1081-1094. by S. L. Porter, A. V. Warren, A. C. Martin, J. P. Armitage posted to chemotaxis rhodobacter sphaeroides by Pao-Yang on 2008-02-20 12:07:15 as along with 1 person RebeccaHamer
	Evidence for two chemosensory pathways in Rhodobacter sphaeroides. [My Copy] Mol Microbiol, Vol. 26, No. 5. (December 1997), pp. 1083-1096. by P. A. Hamblin, B. A. Maguire, R. N. Grishanin, J. P. Armitage posted to chemosensory chemotaxis pathways rhodobacter sphaeroides by Pao-Yang on 2008-02-20 12:03:37 as
	The roles of the multiple CheW and CheA homologues in chemotaxis and in chemoreceptor localization in Rhodobacter sphaeroides. [My Copy] Mol Microbiol, Vol. 40, No. 6. (June 2001), pp. 1261-1272. by A. C. Martin, G. H. Wadhams, J. P. Armitage posted to chea chemotaxisrhodobacter chew sphaeroides by Pao-Yang on 2008-02-20 12:01:32 as along with 1 person chrn
	Polar localization of CheA2 in Rhodobacter sphaeroides requires specific Che homologs. [My Copy] J Bacteriol, Vol. 185, No. 16. (August 2003), pp. 4667-4671. by A. C. Martin, U. Nair, J. P. Armitage, J. R. Maddock posted to chemotaxisrhodobacter localization sphaeroides by Pao-Yang on 2008-02-20 12:00:40 as
	Requirements for chemotaxis protein localization in Rhodobacter sphaeroides [My Copy] Molecular Microbiology, Vol. 58, No. 3. (November 2005), pp. 895-902. by George H. Wadhams, Angela C. Martin, Anna V. Warren, Judith P. Armitage posted to chemotaxis rhodobacter sphaeroides by Pao-Yang on 2008-02-20 12:00:03 as along with 1 person RebeccaHamer
	Bacterial chemotaxis: a field in motion [My Copy] Current Opinion in Structural Biology, Vol. 5, No. 6. (December 1995), pp. 744-751. by Ann M. Stock, Sherry L. Mowbray posted to chemotaxis by Pao-Yang on 2008-02-08 15:23:34 as
	Modulated receptor interactions in bacterial transmembrane signaling [My Copy] Trends in Cell Biology, Vol. 14, No. 9. (September 2004), pp. 478-482. by Daniel J. Webre, Peter M. Wolanin, Jeffry B. Stock posted to chemotaxis modular by Pao-Yang on 2008-02-08 15:17:36 as along with 1 person xingxu
	An improved method for identifying functionally linked proteins using phylogenetic profiles [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 4. (2007) by Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini posted to no-tag by Pao-Yang on 2008-02-07 17:34:51 as along with 2 people mingzhi Robinder
	Receptor clustering as a cellular mechanism to control sensitivity. [My Copy] Nature, Vol. 393, No. 6680. (7 May 1998), pp. 85-88. by D. Bray, M. D. Levin, C. J. Morton-Firth posted to chemotaxis clustering by Pao-Yang on 2008-02-05 11:24:37 as along with 1 person chrn
	Evolutionary predictions of binding surfaces and interactions [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 1. (1 February 2002), pp. 21-27. by Olivier Lichtarge, Mathew E. Sowa posted to evolution evolutionary functional interactions protein-protein sites trace by Pao-Yang on 2008-02-04 16:35:53 as along with 1 person cjeans
	Systems biology of bacterial chemotaxis. [My Copy] Curr Opin Microbiol, Vol. 9, No. 2. (April 2006), pp. 187-192. by M. D. Baker, P. M. Wolanin, J. B. Stock posted to chemotaxis by Pao-Yang on 2008-01-31 17:31:54 as along with 2 people chrn RebeccaHamer
	Design and diversity in bacterial chemotaxis: a comparative study in Escherichia coli and Bacillus subtilis. [My Copy] PLoS Biol, Vol. 2, No. 2. (February 2004) by C. V. Rao, J. R. Kirby, A. P. Arkin posted to chemotaxis comparison by Pao-Yang on 2008-01-31 17:31:26 as along with 5 people and 1 group Vincent_Rouilly chrn lingchong BUiGEM RebeccaHamer BUiGEM
	Phosphotransfer in Rhodobacter sphaeroides Chemotaxis [My Copy] Journal of Molecular Biology, Vol. 324, No. 1. (15 November 2002), pp. 35-45. by Steven L. Porter, Judith P. Armitage posted to chemotaxis phosphotransfer by Pao-Yang on 2008-01-31 17:24:16 as along with 1 person RebeccaHamer
	Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins. [My Copy] J Mol Biol, Vol. 307, No. 5. (13 April 2001), pp. 1487-1502. by R. Landgraf, I. Xenarios, D. Eisenberg posted to evolutionary trace by Pao-Yang on 2008-01-22 12:00:50 as along with 7 people and 2 groups ramiro2k barry pansapiens sriram_s cjeans mingzhi marti structural_bioinformatics Bioinformatics
	Identification and localization of a methyl-accepting chemotaxis protein in Rhodobacter sphaeroides. [My Copy] Mol Microbiol, Vol. 36, No. 6. (June 2000), pp. 1222-1233. by G. H. Wadhams, A. C. Martin, J. P. Armitage posted to chemotaxis by Pao-Yang on 2008-01-18 14:29:44 as along with 2 people chrn RebeccaHamer
	Biochemical study of multiple CheY response regulators of the chemotactic pathway of Rhodobacter sphaeroides. [My Copy] J Bacteriol, Vol. 186, No. 15. (August 2004), pp. 5172-5177. by A. Ferré, J. De La Mora, T. Ballado, L. Camarena, G. Dreyfus posted to chemotaxis chey by Pao-Yang on 2008-01-18 14:28:45 as
	Chemotactic control of the two flagellar systems of Rhodobacter sphaeroides is mediated by different sets of CheY and FliM proteins. [My Copy] J Bacteriol, Vol. 189, No. 22. (November 2007), pp. 8397-8401. by A. M. del Campo, T. Ballado, J. de la Mora, S. Poggio, L. Camarena, G. Dreyfus posted to no-tag by Pao-Yang on 2008-01-18 14:27:56 as along with 1 person RebeccaHamer
	Making sense of it all: bacterial chemotaxis [My Copy] Nature Reviews Molecular Cell Biology, Vol. 5, No. 12. (01 December 2004), pp. 1024-1037. by George H. Wadhams, Judith P. Armitage posted to chemotaxis by Pao-Yang on 2008-01-18 12:11:27 as along with 6 people and 1 group gabe_rosser rklancer chrn balabu BUiGEM RebeccaHamer BUiGEM
	The CheYs of Rhodobacter sphaeroides. [My Copy] J Biol Chem, Vol. 281, No. 43. (27 October 2006), pp. 32694-32704. by S. L. Porter, G. H. Wadhams, A. C. Martin, E. D. Byles, D. E. Lancaster, J. P. Armitage posted to chemotaxis chey by Pao-Yang on 2008-01-18 12:08:43 as along with 2 people chrn RebeccaHamer
	Reconstruction of ancestral protein interaction networks for the bZIP transcription factors. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 51. (18 December 2007), pp. 20449-20453. by John W. Pinney, Grigoris D. Amoutzias, Magnus Rattray, David L. Robertson posted to no-tag by Pao-Yang on 2007-12-13 12:48:16 as along with 7 people carlk biomcgary saket tmmurali grahamc cjeans hplatero
	An assessment of the uses of homologous interactions [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 689-695. by Ramazan Saeed, Charlotte Deane posted to gsn gsp homologous interactions negative by Pao-Yang on 2007-12-13 12:47:15 as along with 11 people snow_dragon carlk lawraga winterschlaefer chad_davis grahamc cjeans laughcry mingzhi cdeane samesense
	Coverage and error models of protein-protein interaction data by directed graph analysis [My Copy] Genome Biology, Vol. 8 (10 September 2007), R186. by Tony Chiang, Denise Scholtens, Deepayan Sarkar, Robert Gentleman, Wolfgang Huber posted to coverage error interaction network protein by Pao-Yang on 2007-11-29 10:38:49 as along with 5 people Yanno jfr chad_davis grahamc winterschlaefer
	Learning to predict protein-protein interactions from protein sequences. [My Copy] Bioinformatics, Vol. 19, No. 15. (12 October 2003), pp. 1875-1881. by S. M. Gomez, W. S. Noble, A. Rzhetsky posted to interactions methods prediction predictive protein sequence by Pao-Yang on 2007-11-29 10:37:50 as along with 4 people maryee grahamc cjeans wilbur
	Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets [My Copy] Nature Genetics, Vol. 38, No. 3. (24 February 2006), pp. 285-293. by T. K. B. Gandhi, Jun Zhong, Suresh Mathivanan, et al.L. Karthick, K. N. Chandrika, Sujatha S. Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D. Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S. Bader, Akhilesh Pandey posted to comparison human interactome protein worm yeast by Pao-Yang on 2007-11-29 10:36:48 as along with 14 people and 2 groups semin yyby aprildh31 balajis indigoviolet tny spavey TheresaNiederberger cjeans alwinpremanand dejori pmendes carlk cerca EisenLab FAB-lab
	Evaluation of clustering algorithms for protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 7 (06 November 2006), 488. by Sylvain Brohee, Jacques van Helden posted to algorithms clustering interaction network protein by Pao-Yang on 2007-11-29 10:35:26 as along with 16 people and 1 group kaarsinogen pdelosri jfr chad_davis balajis nirfriedman dquest grahamc cjeans hpaces oktie carlk Borelli AbnerCYH cerca ethkim EPFL_SB_ITP_LBS
	A topologically related singularity suggests a maximum preferred size for protein domains [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 66, No. 3. (2007), pp. 621-629. by Joseph P. Zbilut, Gek H. Chua, Arun Krishnan, et al.Cecilia Bossa, Kristian Rother, Charles L. Webber, Alessandro Giuliani posted to domains for maximum protein size by Pao-Yang on 2007-11-29 10:34:00 as along with 2 people choonpeng cdeane
	Evolution favors protein mutational robustness in sufficiently large populations [My Copy] BMC Biology, Vol. 5, No. 1. (2007) by Jesse Bloom, Zhongyi Lu, David Chen, Alpan Raval, Ophelia Venturelli, Frances Arnold posted to no-tag by Pao-Yang on 2007-11-29 10:33:19 as along with 3 people cdeane bpcusack cambray
	Exploring Biological Network Structure Using Exponential Random Graph Models. [My Copy] Bioinformatics (20 July 2007) by Zachary M M. Saul, Vladimir Filkov posted to exponential graph network radom structure by Pao-Yang on 2007-11-26 14:39:55 as along with 3 people and 1 group tmmurali grahamc iris_2001 OPIG
	Protein-protein interaction hotspots carved into sequences. [My Copy] PLoS computational biology, Vol. 3, No. 7. (13 July 2007) by Yanay Ofran, Burkhard Rost posted to hotspots interaction protein sequence by Pao-Yang on 2007-11-26 14:37:06 as along with 9 people and 2 groups superpyrin qluo bicko dchughes grahamc cjeans zwang Jporci higueruelo G4ID Genetics-of-Gambling
	Identification of functional modules from conserved ancestral protein protein interactions [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i149-158. by Janusz Dutkowski, Jerzy Tiuryn posted to conserved functional interactions modules protein by Pao-Yang on 2007-11-26 14:35:00 as along with 2 people saket grahamc
	Influence of degree correlations on network structure and stability in protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 8 (09 August 2007), 297. by Caroline C. Friedel, Ralf Zimmer posted to degreenetwork interaction networks structureprotein by Pao-Yang on 2007-11-26 14:33:00 as along with 1 person grahamc
	The protein network of bacterial motility [My Copy] Mol Syst Biol, Vol. 3 (31 July 2007) by Seesandra V. Rajagopala, Bjorn Titz, Johannes Goll, et al.Jodi R. Parrish, Katrin Wohlbold, Matthew T. Mckevitt, Timothy Palzkill, Hirotada Mori, Russell L. Finley, Peter Uetz posted to bacterial interaction motility network protein by Pao-Yang on 2007-11-26 14:29:36 as along with 7 people and 3 groups druvus aswin grahamc jmrivort zwang carlk cerca G-quadruplex Supramolecular OPIG
	Tools for visually exploring biological networks. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 20. (15 October 2007), pp. 2651-2659. by Matthew Suderman, Michael Hallett posted to assessment biological networks visulization by Pao-Yang on 2007-11-26 14:27:57 as along with 15 people and 2 groups jvb daforerog skap guhjy icases dullhunk sebastien_vigneau grahamc sgoetz cabbagezs cerami loopback007 schuylrp AlexanderPico hryk TNT Cancer_Stem_Cells
	Modular co-evolution of metabolic networks [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (27 August 2007), 311. by Jing Zhao, Guo H. Ding, Lin Tao, et al.Hong Yu, Zhong H. Yu, Jian H. Luo, Zhi W. Cao, Yi X. Li posted to evolution metabolic modular networks by Pao-Yang on 2007-11-26 14:25:42 as along with 2 people adampah grahamc
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted to biology pathway systems by Pao-Yang on 2007-11-26 14:23:21 as along with 22 people and 2 groups zufar bertelsen tonamswish gbloeb cgaugain ptrobajo pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson thomaskelder heliopais AlexanderPico Bioinformatics OPIG
	Is proteomics the new genomics? [My Copy] Cell, Vol. 130, No. 3. (10 August 2007), pp. 395-398. by Jürgen Cox, Matthias Mann posted to proteomics by Pao-Yang on 2007-11-26 14:20:46 as along with 7 people pekrau yylin frohike grahamc fishtank oelemento anwazo
	Graph Sharpening plus Graph Integration: A Synergy that Improves Protein Functional Classification. [My Copy] Bioinformatics (31 October 2007) by Hyunjung Shin, Andreas Martin M. Lisewski, Olivier Lichtarge posted to no-tag by Pao-Yang on 2007-11-25 20:45:30 as along with 2 people tmmurali bootsy
	The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics [My Copy] PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e59.eor. by Haiyuan Yu, Philip M. Kim, Emmett Sprecher, Valery Trifinov, Mark Gerstein posted to bottlenecks interaction networksbetweenness protein by Pao-Yang on 2007-11-25 14:34:26 as along with 5 people Sonix grahamc zwang taiei688 dylanwalker
	Model-based clustering for social networks [My Copy] Journal of the Royal Statistical Society: Series A (Statistics in Society), Vol. 170, No. 2. (March 2007), pp. 301-354. by Mark S. Handcock, Adrian E. Raftery, Jeremy M. Tantrum posted to clustering model model-based network by Pao-Yang on 2007-11-25 14:27:59 as along with 4 people and 2 groups makrehchi saket galyardt ctacmo Statistics_and_Social_Science Biostatistics
	Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasis. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by P. F. Jonsson, T. Cavanna, D. Zicha, P. A. Bates posted to interaction prediction sequence-basedhomology by Pao-Yang on 2007-11-25 14:25:53 as along with 1 person jfr
	Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. [My Copy] Bioinformatics, Vol. 21 Suppl 1 (1 June 2005) by E. Nabieva, K. Jim, A. Agarwal, B. Chazelle, M. Singh posted to function functionalflow interactions prediction protein by Pao-Yang on 2007-11-25 14:23:32 as along with 7 people and 2 groups tmmurali okarsligil lfriedl wnpx j3xucite jiny carlk kdl Bioinformatics
	Subnets of scale-free networks are not scale-free: Sampling properties of networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 12. (22 March 2005), pp. 4221-4224. by Michael P. H. Stumpf, Carsten Wiuf, Robert M. May posted to network sampling scale-free subnet by Pao-Yang on 2007-11-25 14:21:01 as along with 13 people and 1 group houniao007 davidecellai colmryan sergiun dylanwalker kentsis bpb griota lshaw somasanyal iris_2001 mjoach ilkert complex networks
	InterPreTS: protein interaction prediction through tertiary structure. [My Copy] Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 161-162. by P. Aloy, R. B. Russell posted to binding interactions protein structure by Pao-Yang on 2007-11-25 14:18:05 as along with 6 people kgutwin baaden bicko chad_davis henschel ruvido
	Comparative assessment of large-scale data sets of protein-protein interactions. [My Copy] Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403. by Christian von Mering, Roland Krause, Berend Snel, et al.Michael Cornell, Stephen G. Oliver, Stanley Fields, Peer Bork posted to false interactions positives protein by Pao-Yang on 2007-11-25 14:14:57 as along with 25 people and 6 groups aceol nzm lawraga semin camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido raiyar grahamc iris_2001 cmor shu Evangelia shikin carlk cerca ethkim dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
	A structural perspective on protein-protein interactions. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 313-324. by R. B. Russell, F. Alber, P. Aloy, et al.F. P. Davis, D. Korkin, M. Pichaud, M. Topf, A. Sali posted to interactions protein structure by Pao-Yang on 2007-11-25 14:13:24 as along with 13 people and 1 group baaden bicko anita chad_davis dgront sriram_s ruvido cjeans Evangelia marti higueruelo jteyra timg structure-bii
	How complete are current yeast and human protein-interaction networks? [My Copy] Genome Biology, Vol. 7, No. 11. (01 December 2006), 120. by G. Traver Hart, Arun Ramani, Edward Marcotte posted to false interactions positives protein size by Pao-Yang on 2007-11-25 14:11:17 as along with 7 people and 1 group jperkins suteedee waqaralikeble eukfn shikin carlk phoenixzxl GeneGo
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by Philip M. Kim, Long J. Lu, Yu Xia, Mark B. Gerstein posted to binding evolution hub interactions proteins by Pao-Yang on 2007-11-24 17:22:12 as along with 23 people and 2 groups ucbcjbm pablocarb mgomes rsaito MatthiasReimann cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane phoenixzxl carlk paolomarcatili saket structural_bioinformatics kdl
	Cotranslational protein folding--fact or fiction? [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007) by C. M. Deane, M. Dong, F. P. Huard, B. K. Lance, G. R. Wood posted to cotranslational folding protein by Pao-Yang on 2007-11-22 12:14:28 as along with 3 people ucbcjbm cdeane saunders
	Inferring domain-domain interactions from protein-protein interactions. [My Copy] Genome research, Vol. 12, No. 10. (October 2002), pp. 1540-1548. by Minghua Deng, Shipra Mehta, Fengzhu Sun, Ting Chen posted to domain interactions mrf by Pao-Yang on 2007-11-22 12:08:56 as along with 7 people maryee opheliav wnpx neils phoenixzxl carlk zdai
	Mapping Gene Ontology to proteins based on protein-protein interaction data. [My Copy] Bioinformatics, Vol. 20, No. 6. (12 April 2004), pp. 895-902. by M. Deng, Z. Tu, F. Sun, T. Chen posted to function go mrf prediction by Pao-Yang on 2007-11-22 12:06:23 as

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protein	18
chemotaxis	13
interactions	11
interaction	7
network	7
prediction	7
mrf	5
sphaeroides	5
structure	4
clustering	3
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sites	1
structureprotein	1
subnet	1
svm	1
systems	1
validation	1
visulization	1
worm	1
yeast	1

Pao-Yang's library 59 articles Export

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