PetrovLab's library 42 articles Export

	The impact of recombination on nucleotide substitutions in the human genome. [My Copy] PLoS genetics, Vol. 4, No. 5. (May 2008) by L. Duret, P. F. Arndt posted to evolution population_genetics recombination by PetrovLab on 2008-10-06 21:09:01 as along with 4 people madreach aprasad gjuggler balicea
	Improved repeat identification and masking in Dipterans. [My Copy] Gene, Vol. 389, No. 1. (1 March 2007), pp. 1-9. by Christopher D. Smith, Robert C. Edgar, Mark D. Yandell, et al.Douglas R. Smith, Susan E. Celniker, Eugene W. Myers, Gary H. Karpen posted to bioinformatics by PetrovLab on 2008-05-30 02:16:19 as along with 4 people and 1 group operon timflutre natstreet druvus LabDros
	LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss. [My Copy] BMC genomics, Vol. 8 (06 July 2007), 218. by Clémentine Vitte, Olivier Panaud, Hadi Quesneville posted to bioinformatics plants te by PetrovLab on 2008-05-29 02:27:14 as along with 3 people operon timflutre urgi
	DupMasker: A tool for annotating primate segmental duplications [My Copy] Genome Res. (23 May 2008), gr.078477.108. by Zhaoshi Jiang, Robert Hubley, Arian Smit, Evan E. Eichler posted to bioinformatics duplication human by PetrovLab on 2008-05-28 02:22:10 as along with 2 people Neeperando pradiptaray
	Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets. [My Copy] Genomics (13 March 2008) by Nicolas Buisine, Hadi Quesneville, Vincent Colot posted to athaliana bioinformatics plants repeats by PetrovLab on 2008-05-27 17:11:45 as along with 4 people operon dchughes timflutre urgi
	Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 27. (3 July 2007), pp. 11340-11345. by Casey M. Bergman, Douda Bensasson posted to bioinformatics drosophila evolution genomics by PetrovLab on 2008-05-22 02:52:01 as along with 2 people hdopazo operon
	Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes [My Copy] Genome Biology, Vol. 9, No. 2. (21 February 2008), R39. by Hsiao P. Yang, Daniel Barbash posted to drosophila genomics te by PetrovLab on 2008-05-14 18:58:12 as along with 1 person gwallau
	Comparative evolution history of SINEs in Arabidopsis thaliana and Brassica oleracea: evidence for a high rate of SINE loss. [My Copy] Cytogenetic and genome research, Vol. 110, No. 1-4. (2005), pp. 441-447. by A. Lenoir, T. Pélissier, C. Bousquet-Antonelli, J. M. Deragon posted to comparative_genomic te thaliana by PetrovLab on 2008-05-14 18:56:18 as
	Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation. [My Copy] PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007) by Joti Giordano, Yongchao Ge, Yevgeniy Gelfand, György Abrusán, Gary Benson, Peter E E. Warburton posted to genome phylogeny te by PetrovLab on 2008-05-14 18:34:11 as along with 7 people and 3 groups kiara aprasad dchughes sebastien_vigneau N0131826 paulcartwright yoanjacquemin G4ID Genetics-of-Gambling BergmanLab
	Evolution of genes and genomes on the Drosophila phylogeny [My Copy] Nature, Vol. 450, No. 7167. (08 November 2007), pp. 203-218. posted to comparative_genomic drosophila evolution genome phylogeny by PetrovLab on 2008-05-13 20:22:17 as along with 37 people and 5 groups aaltenburger biomcgary nuttpo daveGerrard Anachff GustavoLacerda mqbphcw3 rpetrenko gwallau chica jlncdr aprasad gjuggler lizbiogen jbsaltz druvus pradiptaray pengchy operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 CharlesM hpaces caseybrown emptyhb urgi noor isimpson balicea cisevol hdopazo Bioinformatics EisenLab Mycology BergmanLab Drosophila-Genetics-Genomics-2008
	Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 219-232. by A. Stark, M. F. Lin, P. Kheradpour, et al.J. S. Pedersen, L. Parts, J. W. Carlson, M. A. Crosby, M. D. Rasmussen, S. Roy, A. N. Deoras, J. G. Ruby, J. Brennecke, , , E. Hodges, A. S. Hinrichs, A. Caspi, B. Paten, S. W. Park, M. V. Han, M. L. Maeder, B. J. Polansky, B. E. Robson, S. Aerts, J. van Helden, B. Hassan, D. G. Gilbert, D. A. Eastman, M. Rice, M. Weir, M. W. Hahn, Y. Park, C. N. Dewey, L. Pachter, W. J. Kent, D. Haussler, E. C. Lai, D. P. Bartel, G. J. Hannon, T. C. Kaufman, M. B. Eisen, A. G. Clark, D. Smith, S. E. Celniker, W. M. Gelbart, M. Kellis posted to comparative_genomic drosophila genome phylogeny by PetrovLab on 2008-05-13 20:21:34 as along with 21 people and 3 groups heliopais anphony kieran101 Neeperando pradiptaray rouault druvus operon tmmurali djkt timflutre stajich lp2 cabbagezs nklee hpaces roys caseybrown gjuggler shuzhens cisevol microRNA Mycology Drosophila-Genetics-Genomics-2008
	Complex evolution of gypsy in Drosophilid species. [My Copy] Molecular biology and evolution, Vol. 21, No. 10. (1 October 2004), pp. 1831-1842. by Fabiana Herédia, Elgion Lúcio L. Loreto, Vera Lúcia L. Valente posted to drosophila by PetrovLab on 2008-05-06 01:43:31 as along with 3 people Anachff gwallau jlncdr
	Multiple invasions of Errantivirus in the genus Drosophila [My Copy] Insect Molecular Biology, Vol. 17, No. 2. (April 2008), pp. 113-124. by A. Ludwig, Valente, E. L. S. Loreto posted to drosophila by PetrovLab on 2008-05-06 01:38:31 as along with 3 people gwallau lizbiogen operon
	Genomic heterogeneity of background substitutional patterns in Drosophila melanogaster. [My Copy] Genetics, Vol. 169, No. 2. (February 2005), pp. 709-722. by N. D. Singh, P. F. Arndt, D. A. Petrov posted to drosophila by PetrovLab on 2008-05-02 20:00:03 as along with 2 people coldmeadow operon
	The large genome constraint hypothesis: evolution, ecology and phenotype. [My Copy] Ann Bot (Lond), Vol. 95, No. 1. (January 2005), pp. 177-190. by C. A. Knight, N. A. Molinari, D. A. Petrov posted to ecology evolution by PetrovLab on 2008-05-02 19:59:27 as along with 4 people echinotrix timflutre TaqSys qwermish
	Protein Evolution in the Context of Drosophila Development [My Copy] Journal of Molecular Evolution, Vol. 60, No. 6. (1 June 2005), pp. 774-785. by Jerel C. Davis, Onn Brandman, Dmitri A. Petrov posted to drosophila evolution by PetrovLab on 2008-05-02 19:58:39 as along with 2 people and 1 group daveGerrard azazello BergmanLab
	Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects. [My Copy] Journal of molecular evolution, Vol. 60, No. 6. (June 2005), pp. 748-763. by P. F. Arndt, T. Hwa, D. A. Petrov posted to human by PetrovLab on 2008-05-02 19:58:06 as
	X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis. [My Copy] Genetics, Vol. 171, No. 1. (September 2005), pp. 145-155. by N. D. Singh, J. C. Davis, D. A. Petrov posted to drosophila by PetrovLab on 2008-05-02 19:57:32 as
	Codon bias and noncoding GC content correlate negatively with recombination rate on the Drosophila X chromosome. [My Copy] Journal of molecular evolution, Vol. 61, No. 3. (September 2005), pp. 315-324. by N. D. Singh, J. C. Davis, D. A. Petrov posted to drosophila recombination by PetrovLab on 2008-05-02 19:56:55 as
	Pesticide Resistance via Transposition-Mediated Adaptive Gene Truncation in Drosophila [My Copy] Science, Vol. 309, No. 5735. (29 July 2005), pp. 764-767. by Yael T. Aminetzach, J. Michael Macpherson, Dmitri A. Petrov posted to drosophila te by PetrovLab on 2008-05-02 19:56:16 as along with 2 people orzenil operon
	Do disparate mechanisms of duplication add similar genes to the genome? [My Copy] Trends in Genetics, Vol. In Press, Corrected Proof by Jerel C. Davis, Dmitri A. Petrov posted to duplication by PetrovLab on 2008-05-02 19:55:20 as along with 6 people and 2 groups biomcgary Retchless dchughes mikemacpherson nirfriedman bpcusack G4ID Genetics-of-Gambling
	Minor shift in background substitutional patterns in the Drosophila saltans and willistoni lineages is insufficient to explain GC content of coding sequences [My Copy] BMC Biology, Vol. 4 (18 October 2006), 37. by Nadia D. Singh, Peter F. Arndt, Dmitri A. Petrov posted to drosophila evolution by PetrovLab on 2008-05-02 19:54:35 as along with 1 person lizbiogen
	Similar Levels of X-linked and Autosomal Nucleotide Variation in African and non-African populations of Drosophila melanogaster [My Copy] BMC Evolutionary Biology, Vol. 7 (25 October 2007), 202. by Nadia D. Singh, Michael J. Macpherson, Jeffrey D. Jensen, Dmitri A. Petrov posted to drosophila by PetrovLab on 2008-05-02 19:53:31 as along with 1 person and 1 group dpollard EisenLab
	DNA indels in coding regions reveal selective constraints on protein evolution in the human lineage. [My Copy] BMC evolutionary biology, Vol. 7, No. 1. (12 October 2007), 191. by N. de la Chaux, P. W. Messer, P. F. Arndt posted to evolution human by PetrovLab on 2008-05-02 19:46:35 as along with 2 people djkt gjuggler
	Effects of long-range correlations in DNA on sequence alignment score statistics. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 14, No. 5. (June 2007), pp. 655-668. by P. W. Messer, R. Bundschuh, M. Vingron, P. F. Arndt posted to genomics by PetrovLab on 2008-05-02 19:44:53 as
	The majority of recent short DNA insertions in the human genome are tandem duplications. [My Copy] Mol Biol Evol, Vol. 24, No. 5. (May 2007), pp. 1190-1197. by P. W. Messer, P. F. Arndt posted to genomics human repeats by PetrovLab on 2008-05-02 19:43:57 as along with 2 people aprasad dchughes
	CorGen--measuring and generating long-range correlations for DNA sequence analysis. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006) by P. W. Messer, P. F. Arndt posted to bioinformatics genomics by PetrovLab on 2008-05-02 19:42:39 as
	Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome. [My Copy] BMC biology, Vol. 3 (2005) by M. Lipatov, K. Lenkov, D. A. Petrov, C. M. Bergman posted to no-tag by PetrovLab on 2008-05-02 19:29:15 as
	A novel method distinguishes between mutation rates and fixation biases in patterns of single-nucleotide substitution. [My Copy] Journal of molecular evolution, Vol. 62, No. 2. (February 2006), pp. 168-175. by M. Lipatov, P. F. Arndt, T. Hwa, D. A. Petrov posted to no-tag by PetrovLab on 2008-05-02 19:28:49 as along with 1 person smbe2008
	Genomewide Spatial Correspondence Between Nonsynonymous Divergence and Neutral Polymorphism Reveals Extensive Adaptation in Drosophila [My Copy] Genetics, Vol. 177, No. 4. (1 December 2007), pp. 2083-2099. by Michael J. Macpherson, Guy Sella, Jerel C. Davis, Dmitri A. Petrov posted to no-tag by PetrovLab on 2008-05-02 19:27:53 as along with 4 people renewang brant caseybrown smbe2008
	Testing Chromosomal Phylogenies and Inversion Breakpoint Reuse in Drosophila [My Copy] Genetics, Vol. 175, No. 1. (1 January 2007), pp. 167-177. by Josefa González, Ferran Casals, Alfredo Ruiz posted to drosophila te by PetrovLab on 2008-05-02 19:26:53 as along with 1 person operon
	Nonadaptive Explanations for Signatures of Partial Selective Sweeps in Drosophila [My Copy] Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1025-1042. by J. Michael Macpherson, Josefa Gonzalez, Daniela M. Witten, et al.Jerel C. Davis, Noah A. Rosenberg, Aaron E. Hirsh, Dmitri A. Petrov posted to drosophila by PetrovLab on 2008-05-02 19:25:31 as along with 2 people operon caseybrown
	Chromosomal elements evolve at different rates in the Drosophila genome. [My Copy] Genetics, Vol. 161, No. 3. (July 2002), pp. 1137-1154. by J. González, J. M. Ranz, A. Ruiz posted to drosophila te by PetrovLab on 2008-05-02 19:24:37 as
	Abundance and chromosomal distribution of six Drosophila buzzatii transposons: BuT1, BuT2, BuT3, BuT4, BuT5, and BuT6. [My Copy] Chromosoma, Vol. 115, No. 5. (October 2006), pp. 403-412. by F. Casals, J. González, A. Ruiz posted to drosophila te by PetrovLab on 2008-05-02 19:23:30 as
	Chromosomal organization is shaped by the transcription regulatory network. [My Copy] Trends in genetics : TIG, Vol. 21, No. 3. (March 2005), pp. 138-142. by Ruth Hershberg, Esti Yeger-Lotem, Hanah Margalit posted to no-tag by PetrovLab on 2008-05-02 19:21:51 as along with 1 person idoerg
	Co-evolution of transcription factors and their targets depends on mode of regulation [My Copy] Genome Biology, Vol. 7 (19 July 2006), R62. by Ruth Hershberg, Hanah Margalit posted to no-tag by PetrovLab on 2008-05-02 19:20:49 as along with 4 people and 2 groups indigoviolet dpollard cjeans cisevol EisenLab cis-regulatory-evolution
	Reduced selection leads to accelerated gene loss in Shigella [My Copy] Genome Biology, Vol. 8 (08 August 2007), R164. by Ruth Hershberg, Hua Tang, Dmitri A. Petrov posted to no-tag by PetrovLab on 2008-05-02 19:19:53 as along with 2 people operon AaronDarling
	Accelerated evolutionary rate may be responsible for the emergence of lineage-specific genes in ascomycota. [My Copy] Journal of molecular evolution, Vol. 63, No. 1. (July 2006), pp. 1-11. by J. J. Cai, P. C. Woo, S. K. Lau, D. K. Smith, K. Y. Yuen posted to no-tag by PetrovLab on 2008-05-02 19:18:50 as
	MBEToolbox: a MATLAB toolbox for sequence data analysis in molecular biology and evolution. [My Copy] BMC bioinformatics, Vol. 6 (2005) by J. J. Cai, D. K. Smith, X. Xia, K. Y. Yuen posted to no-tag by PetrovLab on 2008-05-02 19:18:07 as
	Exploring the Penicillium marneffei genome. [My Copy] Archives of microbiology, Vol. 179, No. 5. (May 2003), pp. 339-353. by K. Y. Yuen, G. Pascal, S. S. Wong, et al.P. Glaser, P. C. Woo, F. Kunst, J. J. Cai, E. Y. Cheung, C. Médigue, A. Danchin posted to no-tag by PetrovLab on 2008-05-02 19:17:24 as
	PGEToolbox: A Matlab Toolbox for Population Genetics and Evolution. [My Copy] The Journal of heredity (29 February 2008) by James J J. Cai posted to bioinformatics pop_genetics population_genetics by PetrovLab on 2008-05-02 19:13:33 as
	Metabolic diversification--independent assembly of operon-like gene clusters in different plants. [My Copy] Science (New York, N.Y.), Vol. 320, No. 5875. (25 April 2008), pp. 543-547. by B. Field, A. E. Osbourn posted to gene_cluster plants thaliana by PetrovLab on 2008-05-02 18:34:02 as along with 3 people and 1 group katerinakal jmjimenez jlgreen Green Lab

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drosophila	17
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phylogeny	3
plants	3
duplication	2
population_genetics	2
recombination	2
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ecology	1
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PetrovLab's library 42 articles Export

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