RMGraze's library 297 articles Export

	X chromosomes and autosomes evolve at similar rates in Drosophila: No evidence for faster-X protein evolution. [My Copy] Genome Res (6 March 2006) by Kevin Thornton, Doris Bachtrog, Peter Andolfatto posted to x_autosome by RMGraze on 2009-03-25 21:14:03 as along with 2 people and 2 groups indigoviolet penka EisenLab Nie
	Regional and strain-specific gene expression mapping in the adult mouse brain [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 20. (26 September 2000), pp. 11038-11043. by Rickard Sandberg, Rie Yasuda, Daniel G. Pankratz, et al.Todd A. Carter, Jo A. Del Rio, Lisa Wodicka, Mark Mayford, David J. Lockhart, Carrolee Barlow posted to cis_trans by RMGraze on 2007-08-02 00:06:10 as along with 2 people and 1 group manduca jeremymiller GeschwindLab
	The Population Genetics of the Origin and Divergence of the Drosophila simulans Complex Species [My Copy] Genetics, Vol. 156, No. 4. (1 December 2000), pp. 1913-1931. by Richard M. Kliman, Peter Andolfatto, Jerry A. Coyne, et al.Frantz Depaulis, Martin Kreitman, Andrew J. Berry, James Mccarter, John Wakeley, Jody Hey posted to sex_comb_ref by RMGraze on 2007-04-25 00:41:10 as along with 1 person larios
	Multiple Locus Linkage Analysis of Genomewide Expression in Yeast [My Copy] PLoS Biology, Vol. 3, No. 8. (1 August 2005), e267. by John D. Storey, Joshua M. Akey, Leonid Kruglyak posted to cis_trans by RMGraze on 2007-04-08 20:40:36 as along with 1 person and 1 group mrockman RockmanLab
	Coordinated Genetic Regulation of Growth and Lignin Revealed by Quantitative Trait Locus Analysis of cDNA Microarray Data in an Interspecific Backcross of Eucalyptus [My Copy] Plant Physiol., Vol. 135, No. 4. (1 August 2004), pp. 2368-2378. by Matias Kirst, Alexander A. Myburg, Jose P. De Leon, Mariana E. Kirst, Jay Scott, Ronald Sederoff posted to cis_trans by RMGraze on 2007-04-08 20:31:34 as along with 1 person orzenil
	Genetic Dissection of Transcriptional Regulation in Budding Yeast [My Copy] Science, Vol. 296, No. 5568. (26 April 2002), pp. 752-755. by Rachel B. Brem, Gael Yvert, Rebecca Clinton, Leonid Kruglyak posted to cis_trans yeast by RMGraze on 2007-04-08 20:23:14 as along with 10 people and 3 groups balabu JAShapiro brant dpollard adepace oannes raiyar lp2 jo_davies mimulus_99 EisenLab Regulomics_UCHSC steinmetzlab
	Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function [My Copy] Nature Genetics, Vol. 37, No. 3. (13 February 2005), pp. 233-242. by Elissa J. Chesler, Lu Lu, Siming Shou, et al.Yanhua Qu, Jing Gu, Jintao Wang, Hui C. Hsu, John D. Mountz, Nicole E. Baldwin, Michael A. Langston, David W. Threadgill, Kenneth F. Manly, Robert W. Williams posted to cis_trans by RMGraze on 2007-04-08 20:09:02 as along with 6 people ajbattle sameersoi carlk natstreet karfunkel isimpson
	Genetic analysis of genome-wide variation in human gene expression. [My Copy] Nature, Vol. 430, No. 7001. (12 August 2004), pp. 743-747. by Michael Morley, Cliona M. Molony, Teresa M. Weber, et al.James L. Devlin, Kathryn G. Ewens, Richard S. Spielman, Vivian G. Cheung posted to cis_trans by RMGraze on 2007-04-08 20:05:52 as along with 13 people and 1 group owenlancaster ajbattle athma provero caseybrown snuppepuppan kentsis adepace qfwills vplagnol nagendraproj jo_davies mimulus_99 EisenLab
	Compensatory cis-trans Evolution and the Dysregulation of Gene Expression in Interspecific Hybrids of Drosophila. [My Copy] Genetics, Vol. 171, No. 4. (December 2005), pp. 1813-1822. by C. R. Landry, P. J. Wittkopp, C. H. Taubes, J. M. Ranz, A. G. Clark, D. L. Hartl posted to cis_trans by RMGraze on 2007-04-02 03:31:50 as along with 2 people and 1 group emilyhare emarker EisenLab
	Variation within and among species in gene expression: raw material for evolution [My Copy] Molecular Ecology, Vol. 15, No. 5. (April 2006), pp. 1197-1211. by D. Andrew Whitehea, Douglas L. Crawford posted to cis_trans by RMGraze on 2007-04-02 03:19:10 as along with 1 person and 1 group emilyhare EisenLab
	Allelic Variation in Gene Expression Is Common in the Human Genome [My Copy] Genome Res., Vol. 13, No. 8. (1 August 2003), pp. 1855-1862. by Shuen H. Lo, Zhining Wang, Ying Hu, et al.Howard H. Yang, Sheryl Gere, Kenneth H. Buetow, Maxwell P. Lee posted to cis_trans by RMGraze on 2007-04-02 03:00:13 as along with 4 people and 1 group qfwills emarker mimulus_99 dpollard RockmanLab
	High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis. [My Copy] Genome Res, Vol. 16, No. 6. (June 2006), pp. 787-795. by M. A. West, H. van Leeuwen, A. Kozik, et al.D. J. Kliebenstein, R. W. Doerge, D. A. St Clair, R. W. Michelmore posted to cis_trans by RMGraze on 2007-04-02 02:59:35 as along with 2 people leandrogneves xwbcn
	Analysis of allelic differential expression in human white blood cells [My Copy] Genome Res., Vol. 16, No. 3. (1 March 2006), pp. 331-339. by Krishna P. V. Pant, Heng Tao, Erica J. Beilharz, Dennis G. Ballinger, David R. Cox, Kelly A. Frazer posted to cis_trans by RMGraze on 2007-04-02 02:57:35 as along with 5 people and 1 group xwbcn qfwills emarker mimulus_99 dpollard RockmanLab
	Cis-acting variation in the expression of a high proportion of genes in human brain [My Copy] Human Genetics, Vol. 113, No. 2. (1 July 2003), pp. 149-153. by Nicholas J. Bray, Paul R. Buckland, Michael J. Owen, Michael C. O'Donovan posted to cis_trans by RMGraze on 2007-04-02 02:02:59 as along with 1 person mimulus_99
	Allele-specific gene expression uncovered. [My Copy] Trends Genet, Vol. 20, No. 3. (March 2004), pp. 113-116. by J. C. Knight posted to cis_trans by RMGraze on 2007-04-02 02:01:54 as along with 2 people gruberjd emarker
	Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays. [My Copy] Genome Res, Vol. 15, No. 2. (February 2005), pp. 284-291. by J. Ronald, J. M. Akey, J. Whittle, E. N. Smith, G. Yvert, L. Kruglyak posted to cis_trans by RMGraze on 2007-04-02 01:20:27 as along with 1 person akeyj
	Direct Allelic Variation Scanning of the Yeast Genome [My Copy] Science, Vol. 281, No. 5380. (21 August 1998), pp. 1194-1197. by Elizabeth A. Winzeler, Dan R. Richards, Andrew R. Conway, et al.Alan L. Goldstein, Sue Kalman, Michael J. Mccullough, John H. Mccusker, David A. Stevens, Lisa Wodicka, David J. Lockhart, Ronald W. Davis posted to cis_trans by RMGraze on 2007-04-02 01:18:21 as
	Gene arrays are not just for measuring gene expression. [My Copy] Trends Plant Sci, Vol. 8, No. 9. (September 2003), pp. 413-416. by S. P. Hazen, S. A. Kay posted to cis_trans by RMGraze on 2007-04-02 01:10:22 as
	Assessing gene significance from cDNA microarray expression data via mixed models. [My Copy] J Comput Biol, Vol. 8, No. 6. (2001), pp. 625-637. by R. D. Wolfinger, G. Gibson, E. D. Wolfinger, et al.L. Bennett, H. Hamadeh, P. Bushel, C. Afshari, R. S. Paules posted to cis_trans microarray by RMGraze on 2007-02-19 20:03:37 as along with 1 person nolodie
	Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing [My Copy] Journal of the Royal Statistical Society. Series B (Methodological), Vol. 57, No. 1. (1995), pp. 289-300. by Yoav Benjamini, Yosef Hochberg posted to fdr microarray by RMGraze on 2007-02-13 21:49:17 as along with 38 people and 4 groups ctacmo abrentnall jperkins CulCog jlorent zufar bertelsen Zephyrus fisherp michaelbarton dakelley lwaldron polivares brianb ucbcjbm jfr xingxu emptyhb renewang Yanno sdvillal druvus natstreet czeller guhjy oannes vplagnol frohike grahamc shigepong ccr axelon ugengma amsantos rschulz dragonrez isimpson vertikalist Biostatistics Bioinformatics Regulomics_UCHSC BTS-PT-AS-CS
	A Model-Based Background Adjustment for Oligonucleotide Expression Arrays [My Copy] Journal of the American Statistical Association, Vol. 99, No. 468., 909. by Zhijin Wu, Rafael A. Irizarry, Robert Gentleman, Francisco Martinez-Murillo, Forrest Spencer posted to cis_trans microarray by RMGraze on 2006-12-29 01:37:18 as along with 9 people and 1 group jperkins schwalb shikin karinlag GeeSharpMinor thomlo nicholso jo_davies bertelsen GeneGo
	Rank Difference Analysis of Microarrays (RDAM), a novel approach to statistical analysis of microarray expression profiling data [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (11 October 2004), 148. by Dietmar Martin, Philippe Demougin, Michael Hall, Michel Bellis posted to cis_trans microarray by RMGraze on 2006-12-08 20:26:56 as along with 2 people humburg textoris
	The DrosDel Collection: A Set of P-Element Insertions for Generating Custom Chromosomal Aberrations in Drosophila melanogaster [My Copy] Genetics, Vol. 167, No. 2. (1 June 2004), pp. 797-813. by Edward Ryder, Fiona Blows, Michael Ashburner, et al.Rosa Bautista-Llacer, Darin Coulson, Jenny Drummond, Jane Webster, David Gubb, Nicola Gunton, Glynnis Johnson, Cahir J. O'Kane, David Huen, Punita Sharma, Zoltan Asztalos, Heiko Baisch, Janet Schulze, Maria Kube, Kathrin Kittlaus, Gunter Reuter, Peter Maroy, Janos Szidonya, Asa Rasmuson-Lestander, Karin Ekstrom, Barry Dickson, Christoph Hugentobler, Hugo Stocker, Ernst Hafen, Jean A. Lepesant, Gert Pflugfelder, Martin Heisenberg, Bernard Mechler, Florenci Serras, Montserrat Corominas, Stephan Schneuwly, Thomas Preat, John Roote, Steven Russell posted to cg2791 p_inserts sex_comb_ref by RMGraze on 2006-12-07 19:36:14 as
	Transposable elements as tools for genomics and genetics in Drosophila [My Copy] Brief Funct Genomic Proteomic, Vol. 2, No. 1. (1 January 2003), pp. 57-71. by Edward Ryder, Steven Russell posted to cg2791 sex_comb_ref by RMGraze on 2006-12-06 23:31:09 as along with 5 people and 1 group cmor orzenil yulian2108 cisevol pradiptaray BergmanLab
	Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors [My Copy] Nature Genetics, Vol. 35, No. 1. (03 August 2003), pp. 57-64. by Gael Yvert, Rachel B. Brem, Jacqueline Whittle, et al.Joshua M. Akey, Eric Foss, Erin N. Smith, Rachel Mackelprang, Leonid Kruglyak posted to cis_trans yeast by RMGraze on 2006-11-29 20:14:19 as along with 4 people and 1 group ajbattle xwbcn oannes lp2 Regulomics_UCHSC
	Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 1. (2 January 2001), pp. 31-36. by Cheng Li, Wing H. Wong posted to cis_trans microarray by RMGraze on 2006-11-16 21:26:02 as along with 3 people humburg svozil bertelsen
	Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. [My Copy] Genome biology, Vol. 2, No. 8. (2001), pp. research0032.1-research0032.11. by C. Li, W. Hung Wong posted to cis_trans microarray by RMGraze on 2006-11-16 21:21:16 as along with 4 people and 1 group jperkins fisherp jeremymiller bertelsen GeschwindLab
	A statistical multiprobe model for analyzing cis and trans genes in genetical genomics experiments with short-oligonucleotide arrays. [My Copy] Genetics, Vol. 171, No. 3. (November 2005), pp. 1437-1439. by R. Alberts, P. Terpstra, L. V. Bystrykh, G. de Haan, R. C. Jansen posted to cis_trans microarray snp by RMGraze on 2006-11-10 21:45:11 as along with 1 person qfwills
	Single-feature polymorphism discovery in the barley transcriptome. [My Copy] Genome Biol, Vol. 6, No. 6. (2005) by N. Rostoks, J. O. Borevitz, P. E. Hedley, et al.J. Russell, S. Mudie, J. Morris, L. Cardle, D. F. Marshall, R. Waugh posted to cis_trans microarray snp by RMGraze on 2006-11-10 21:36:07 as along with 2 people xwbcn natstreet
	Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit. [My Copy] Bioinformatics, Vol. 21, No. 20. (15 October 2005), pp. 3852-3858. by X. Cui, J. Xu, R. Asghar, et al.P. Condamine, J. T. Svensson, S. Wanamaker, N. Stein, M. Roose, T. J. Close posted to cis_trans microarray snp by RMGraze on 2006-11-10 21:26:31 as along with 1 person xwbcn
	Genome-Wide Detection of Polymorphisms at Nucleotide Resolution with a Single DNA Microarray [My Copy] Science, Vol. 311, No. 5769. (31 March 2006), pp. 1932-1936. by David Gresham, Douglas M. Ruderfer, Stephen C. Pratt, et al.Joseph Schacherer, Maitreya J. Dunham, David Botstein, Leonid Kruglyak posted to cis_trans microarray snp by RMGraze on 2006-11-10 21:20:49 as along with 8 people and 3 groups stevanspringer ccots dchughes gandhih nirfriedman Billemann djkt vesper FAB-lab G4ID Genetics-of-Gambling
	The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by R. G. Verhaak, F. J. Staal, P. J. Valk, B. Lowenberg, M. J. Reinders, D. de Ridder posted to sex_comb_ref by RMGraze on 2006-10-16 17:08:08 as along with 3 people jfr ghattem frohike
	Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis. [My Copy] Genome Biol, Vol. 3, No. 7. (14 June 2002) by R. Hoffmann, T. Seidl, M. Dugas posted to sex_comb_ref by RMGraze on 2006-10-16 09:56:40 as along with 1 person heliopais
	Needs and Targets for the multi sex combs Gene Product in Drosophila melanogaster [My Copy] Genetics, Vol. 149, No. 4. (1 August 1998), pp. 1823-1838. by Olivier Saget, Francoise Forquignon, Pedro Santamaria, Neel B. Randsholt posted to sex_comb_ref by RMGraze on 2006-10-16 09:10:13 as
	Molecular Population Genetics of Accessory Gland Protein Genes and Testis-Expressed Genes in Drosophila mojavensis and D. arizonae [My Copy] Genetics, Vol. 171, No. 3. (1 November 2005), pp. 1083-1101. by Bradley J. Wagstaff, David J. Begun posted to sex_comb_ref by RMGraze on 2006-10-16 06:46:18 as along with 1 person and 1 group stevanspringer FAB-lab
	The causes of Haldane's rule. [My Copy] Science, Vol. 282, No. 5390. (30 October 1998), pp. 889-891. by M. Turelli posted to haldanes_rule sex_comb_ref by RMGraze on 2006-10-16 06:32:24 as
	Genetic studies of two sister species in the Drosophila melanogaster subgroup, D. yakuba and D. santomea. [My Copy] Genet Res, Vol. 84, No. 1. (August 2004), pp. 11-26. by J. A. Coyne, S. Elwyn, S. Y. Kim, A. Llopart posted to sex_comb_ref by RMGraze on 2006-10-16 05:06:23 as
	Haldane's rule in taxa lacking a hemizygous X. [My Copy] Science, Vol. 282, No. 5390. (30 October 1998), pp. 952-954. by D. C. Presgraves, H. A. Orr posted to haldanes_rule sex_comb_ref by RMGraze on 2006-10-16 04:32:59 as
	Haldane's Rule [My Copy] Annual Review of Ecology and Systematics, Vol. 28 (1997), pp. 195-218. by Allen H. Orr posted to haldanes_rule sex_comb_ref by RMGraze on 2006-10-16 04:24:35 as
	The broom of the sorcerer's apprentice: the fine structure of a chromosomal region causing reproductive isolation between two sibling species of Drosophila. [My Copy] Genetics, Vol. 143, No. 3. (July 1996), pp. 1287-1298. by A. W. Davis, C. I. Wu posted to hybrid_sterility sex_comb_ref by RMGraze on 2006-10-16 04:09:51 as
	Allele-Specific KRT1 Expression Is a Complex Trait [My Copy] PLoS Genetics, Vol. 2, No. 6. (1 June 2006), e93. by Heng Tao, David R. Cox, Kelly A. Frazer posted to allele_specific cis_trans genetics by RMGraze on 2006-10-09 20:46:27 as along with 4 people and 1 group ccots emarker mimulus_99 dpollard RockmanLab
	On the theoretical and empirical framework for studying genetic interactions within and among species. [My Copy] Am Nat, Vol. 165, No. 5. (May 2005), pp. 524-536. by J. P. Demuth, M. J. Wade posted to epistasis speciation by RMGraze on 2006-10-09 20:42:33 as
	The nucleotide changes governing cuticular hydrocarbon variation and their evolution in Drosophila melanogaster [My Copy] PNAS, Vol. 98, No. 7. (27 March 2001), pp. 3920-3925. by Aya Takahashi, Shun-Chern Tsaur, Jerry A. Coyne, Chung-I Wu posted to chc male qtl by RMGraze on 2006-10-09 20:37:58 as along with 2 people and 2 groups adepace cisevol EisenLab cis-regulatory-evolution
	Quantitative Trait Loci for Cuticular Hydrocarbons Associated With Sexual Isolation Between Drosophila simulans and D. sechellia [My Copy] Genetics, Vol. 171, No. 4. (1 December 2005), pp. 1789-1798. by Jennifer M. Gleason, Jean-Marc Jallon, Jacques-Deric Rouault, Michael G. Ritchie posted to chc female qtl by RMGraze on 2006-10-09 20:36:30 as
	Sixty Years After "Isolating Mechanisms, Evolution and Temperature": Muller's Legacy [My Copy] Genetics, Vol. 161, No. 3. (1 July 2002), pp. 939-944. by Norman A. Johnson posted to speciation by RMGraze on 2006-10-09 20:34:18 as
	Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray. [My Copy] BMC Genomics, Vol. 5, No. 1. (6 July 2004) by S. C. Renn, N. Aubin-Horth, H. A. Hofmann posted to microarray sex_comb_ref by RMGraze on 2006-10-09 20:21:17 as along with 1 person and 2 groups breden FAB-lab SFUAntibodyResearch
	Systematic determination of patterns of gene expression during Drosophila embryogenesis. [My Copy] Genome Biol, Vol. 3, No. 12. (2002) by P. Tomancak, A. Beaton, R. Weiszmann, et al.E. Kwan, S. Shu, S. E. Lewis, S. Richards, M. Ashburner, V. Hartenstein, S. E. Celniker, G. M. Rubin posted to bdgp_in_situ cg2791 sex_comb_ref by RMGraze on 2006-10-06 19:52:55 as along with 6 people and 2 groups roys briann indigoviolet eukfn wrowell dlmace EisenLab Cline_lab
	Genetics of a difference in cuticular hydrocarbons between Drosophila pseudoobscura and D. persimilis. [My Copy] Genet Res, Vol. 68, No. 2. (October 1996), pp. 117-123. by M. A. Noor, J. A. Coyne posted to qtl sex_comb_ref by RMGraze on 2006-10-06 00:59:27 as
	Dominance, epistasis and the genetics of postzygotic isolation. [My Copy] Genetics, Vol. 154, No. 4. (April 2000), pp. 1663-1679. by M. Turelli, H. A. Orr posted to haldanes_rule hybrid_sterility incompatability sex_comb_ref by RMGraze on 2006-10-05 21:49:30 as along with 2 people and 1 group ccots cmm FAB-lab
	Cuticle protein genes of Drosophila: Structure, organization and evolution of four clustered genes [My Copy] Cell, Vol. 29, No. 3. (July 1982), pp. 1027-1040. by Michael Snyder, Michael Hunkapiller, David Yuen, Donald Silvert, James Fristrom, Norman Davidson posted to drosophila molecular_evolution by RMGraze on 2006-10-05 20:27:59 as

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sex_comb_ref	84
drosophila	64
speciation	39
genetics	31
microarray	31
qtl	30
cis_trans	27
sex_comb	26
gene_expression	15
quantitative_genetics	14
hybrid_sterility	12
spermatogenesis	12
evolution	11
reproductive_isolation	10
small_rna	9
incompatability	7
micoarrays	7
cg2791	6
epistasis	6
fdr	6
hybrid_rescue	6
morphological_differences	6
development	5
haldanes_rule	5
incompatabilities	5
oogenesis	5
stem_cell	5
yeast	5
bioinformatics	4
mating	4
molecular_evolution	4
sex_determination	4
snp	4
aso	3
genomics	3
genotyping	3
male	3
polycomb	3
rna	3
sexual_selection	3
adaptation	2
chc	2
genetic_networks	2
hybrid_zone	2
leg_patterning	2
microarrays	2
molecular_markers	2
morphilogical_divergence	2
oo_hybrid_ref	2
p_inserts	2
selection	2
adh	1
allele_specific	1
bdgp_in_situ	1
behaviour	1
cg4766	1
chromosomal_rearrangement	1
dobzhansky_muller	1
dominance	1
early_lit	1
f2	1
female	1
genomic_imprinting	1
germline	1
intersex	1
inversion	1
leg_discs	1
metabolic_model	1
metabolism	1
microarray_design	1
mosquito	1
mutation	1
notch	1
pigmentation	1
p-inserts	1
recombination	1
resource	1
sensory_bristles	1
sequencing	1
sexual_isolation	1
statistics	1
taste_receptors	1
x	1
x_autosome	1

RMGraze's library 297 articles Export

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