RamuAnandakrishnan's coarse_grain [22 articles] Export

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	Coarse-grained model of nucleic acid bases [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2009), NA. by Maciej Maciejczyk, Aleksandar Spasic, Adam Liwo, Harold A. Scheraga posted to nucleic_acids coarse_grain by RamuAnandakrishnan on 2009-12-19 22:04:32 as
	PRIMO/PRIMONA: A coarse-grained model for proteins and nucleic acids that preserves near-atomistic accuracy [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Srinivasa M. Gopal, Shayantani Mukherjee, Yi-Ming Cheng, Michael Feig posted to coarse_grain by RamuAnandakrishnan on 2009-12-08 21:47:33 as
	Coarse Point Charge Models For Proteins From Smoothed Molecular Electrostatic Potentials [My Copy] Journal of Chemical Theory and Computation, Vol. 0, No. 0. (0000) by Laurence Leherte, Daniel P. Vercauteren posted to coarse_grain by RamuAnandakrishnan on 2009-11-04 21:01:20 as along with 1 person middledomain
	Energy Conservation in Adaptive Hybrid Atomistic/Coarse-Grain Molecular Dynamics [My Copy] Journal of Chemical Theory and Computation, Vol. 3, No. 3. (1 May 2007), pp. 1100-1105. by Bernd Ensing, Steven O. Nielsen, Preston B. Moore, Michael L. Klein, Michele Parrinello posted to energy_conservation coarse_grain by RamuAnandakrishnan on 2009-11-03 12:16:52 as along with 1 person onufriev
	An <I>N</I> log <I>N</I> approximation based on the natural organization of biomolecules for speeding up the computation of long range interactions [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2009), NA. by Ramu Anandakrishnan, Alexey V. Onufriev posted to coarse_grain electrostatics by RamuAnandakrishnan on 2009-07-02 01:04:02 as along with 1 person sobolevnrm
	Mesoscopic models of biological membranes [My Copy] Physics Reports, Vol. 437, No. 1-2. (December 2006), pp. 1-54. by Maddalena Venturoli, Maddalena, Marieke Kranenburg, Berend Smit posted to coarse_grain by RamuAnandakrishnan on 2008-09-04 05:02:14 as along with 2 people sunnytov choonpeng
	Biological and synthetic membranes: What can be learned from a coarse-grained description? [My Copy] Physics Reports, Vol. 434, No. 5-6. (November 2006), pp. 113-176. by M. Muller, K. Katsov, M. Schick posted to coarse_grain by RamuAnandakrishnan on 2008-09-04 04:52:02 as along with 2 people edws loison
	Multiscale modeling of biomolecular systems: in serial and in parallel. [My Copy] Current opinion in structural biology, Vol. 17, No. 2. (April 2007), pp. 192-198. by Gary S. Ayton, Will G. Noid, Gregory A. Voth posted to coarse_grain by RamuAnandakrishnan on 2008-09-04 04:41:43 as along with 5 people bertelsen jonathancooper Elena_Zubova aqeel choonpeng
	Coarse-grained models for proteins [My Copy] Current Opinion in Structural Biology, Vol. 15, No. 2. (April 2005), pp. 144-150. by V TOZZINI, posted to coarse_grain by RamuAnandakrishnan on 2008-09-04 04:39:25 as along with 11 people dfdong saravan flbarroso krapnik baaden aqeel ltrabuco simone cottrell choonpeng iantunbridge
	Implementation of a Serial Replica Exchange Method in a Physics-Based United-Residue (UNRES) Force Field [My Copy] J. Chem. Theory Comput., Vol. 4, No. 8. (12 August 2008), pp. 1386-1400. by Hujun Shen, Cezary Czaplewski, Adam Liwo, Harold A. Scheraga posted to coarse_grain by RamuAnandakrishnan on 2008-09-04 04:35:01 as along with 1 person Sylvain_Prigent
	Dynamics of entangled linear polymer melts: A molecular-dynamics simulation [My Copy] The Journal of Chemical Physics, Vol. 92, No. 8. (1990), pp. 5057-5086. by Kurt Kremer, Gary S. Grest posted to coarse_grain md nucleosome by RamuAnandakrishnan on 2008-08-23 14:46:45 as along with 4 people gsub kaz229 jheco 6rheology
	Multiscale Simulation of Soft Matter: From Scale Bridging to Adaptive Resolution [My Copy] Annual Review of Physical Chemistry, Vol. 59, No. 1. (2008), pp. 545-571. by Matej Praprotnik, Luigi Delle Site, Kurt Kremer posted to coarse_grain electrostatics md by RamuAnandakrishnan on 2008-05-21 13:42:03 as along with 5 people and 1 group loison whitead flbarroso rok softsimu Jiang Research Group
	Some fundamental problems for an energy conserving adaptive resolution molecular dynamics scheme [My Copy] (17 Sep 2007) by L. Delle Site posted to coarse_grain electrostatics md by RamuAnandakrishnan on 2008-04-16 20:41:19 as
	Coarse-grained force field for the nucleosome from self-consistent multiscaling [My Copy] Journal of Computational Chemistry, Vol. 29, No. 9. (2008), pp. 1429-1439. by Karine Voltz, Joanna Trylska, Valentina Tozzini, Vandana Kurkal-Siebert, Jörg Langowski, Jeremy Smith posted to coarse_grain md nucleosome by RamuAnandakrishnan on 2008-02-13 14:39:41 as along with 3 people barmak7282 Elena_Zubova onufriev
	Discretized model of proteins. I. Monte Carlo study of cooperativity in homopolypeptides [My Copy] The Journal of Chemical Physics, Vol. 97, No. 12. (1992), pp. 9412-9426. by Andrzej Kolinski, Jeffrey Skolnick posted to coarse_grain md by RamuAnandakrishnan on 2007-12-03 19:49:55 as
	A united-residue force field for off-lattice protein-structure simulations. I. Functional forms and parameters of long-range side-chain interaction potentials from protein crystal data [My Copy] Journal of Computational Chemistry, Vol. 18, No. 7. (1997), pp. 849-873. by A. Liwo, S. O&lstrok;dziej, M. R. Pincus, R. J. Wawak, S. Rackovsky, H. A. Scheraga posted to coarse_grain md by RamuAnandakrishnan on 2007-12-02 15:24:31 as
	Multiscale modeling and simulation methods with applications to dendritic polymers [My Copy] Computational and Theoretical Polymer Science, Vol. 11, No. 5. (October 2001), pp. 345-356. by Tahir Cagin, Guofeng Wang, Ryan Martin, et al.Georgios Zamanakos, Nagarajan Vaidehi, Daniel T. Mainz, William A. Goddard posted to coarse_grain implicit_solvent md by RamuAnandakrishnan on 2007-12-02 15:00:44 as
	A coarse-graining procedure for flexible polymer chains with bonded and nonbonded interactions [My Copy] The Journal of Chemical Physics, Vol. 116, No. 18. (2002), pp. 8183-8190. by Hiroo Fukunaga, Jun-Ichi Takimoto, Masao Doi posted to coarse_grain md by RamuAnandakrishnan on 2007-12-01 21:55:19 as
	Mapping of Explicit Atom onto United Atom Potentials [My Copy] Macromolecules, Vol. 31, No. 26. (29 December 1998), pp. 9362-9368. by J. D. Mccoy, J. G. Curro posted to coarse_grain md by RamuAnandakrishnan on 2007-11-30 20:58:08 as
	Stability and dynamics of virus capsids described by coarse-grained modeling. [My Copy] Structure, Vol. 14, No. 12. (December 2006), pp. 1767-1777. by A. Arkhipov, P. L. Freddolino, K. Schulten posted to coarse_grain electrostatics folding md by RamuAnandakrishnan on 2007-11-22 04:42:33 as along with 1 person choonpeng
	Molecular Dynamics Simulations of the Complete Satellite Tobacco Mosaic Virus [My Copy] Structure, Vol. 14, No. 3. (March 2006), pp. 437-449. by Peter L. Freddolino, Anton S. Arkhipov, Steven B. Larson, Alexander Mcpherson, Klaus Schulten posted to coarse_grain md by RamuAnandakrishnan on 2007-11-22 04:10:32 as along with 2 people and 2 groups r2s2 barry structural_bioinformatics Bioinformatics
	A finite element framework for computation of protein normal modes and mechanical response [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Mark Bathe posted to coarse_grain md by RamuAnandakrishnan on 2007-11-15 19:40:24 as along with 2 people and 1 group choonpeng skoddet Nielsen group

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md	103
electrostatics	67
pka	57
evolution	57
folding	54
implicit_solvent	52
genome	43
qualifier	26
coarse_grain	22
ligand	14
contact	13
nucleosome	13
force_field	11
gb	11
statistical_mechanics	10
gpu	10
cutoff	10
explicit_solvent	10
pk	9
general_interest	7
molecular_dynamics	6
amber	6
ewald	6
multipole	6
multi_timescale	6
energy_conservation	5
binding_site	4
pb	4
chemical_kinetics	4
numerical_error	3
homology	3
newtons_identity	2
implicit_explicit	2
ulcerative_colitis	2
statistics	2
exponential_function	2
qm_mm	2
structure	2
protein_folding	1
constant_ph	1
parallel_computing	1
docking	1
mult_grid	1
remd	1
implicit	1
capsid	1
pdb	1
mutation_rate	1
thioredoxin	1
visualization	1
chromosome_dynamics	1
volume_integral	1
normal_mode_analysis	1
nucleic_acids	1
myoglobin	1
solvent	1
viral_capsid	1

RamuAnandakrishnan's coarse_grain [22 articles] Export

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