RebeccaHamer's library 98 articles Export

	Tyrosine 106 of CheY plays an important role in chemotaxis signal transduction in Escherichia coli [My Copy] J. Bacteriol., Vol. 178, No. 14. (1 July 1996), pp. 4208-4215. by X. Zhu, C. D. Amsler, K. Volz, P. Matsumura posted to no-tag by RebeccaHamer on 2009-11-20 11:54:25 as
	Structural conservation in the CheY superfamily. [My Copy] Biochemistry, Vol. 32, No. 44. (9 November 1993), pp. 11741-11753. by K. Volz posted to chey by RebeccaHamer on 2009-11-20 11:19:24 as
	A new method for revealing correlated mutations under the structural and functional constraints in proteins [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2506-2513. by Byung-Chul Lee, Dongsup Kim posted to mutations correlated by RebeccaHamer on 2009-11-18 11:21:44 as along with 5 people qluo jlike operon zwang phoenixzxl
	Optimizing Fragment and Scaffold Docking by Use of Molecular Interaction Fingerprints [My Copy] Journal of Chemical Information and Modeling, Vol. 47, No. 1. (1 January 2007), pp. 195-207. by Gilles Marcou, Didier Rognan posted to interactions by RebeccaHamer on 2009-11-16 16:43:44 as along with 8 people klexa richardbickerton nanonan BragilMassoud peprovy schlauchi massivemayhem sithmein
	Crystal structures of CheY from Thermotoga maritima do not support conventional explanations for the structural basis of enhanced thermostability. [My Copy] Protein science : a publication of the Protein Society, Vol. 7, No. 2. (February 1998), pp. 403-412. by K. C. Usher, A. F. de la Cruz, F. W. Dahlquist, R. V. Swanson, M. I. Simon, S. J. Remington posted to chemotaxis by RebeccaHamer on 2009-11-11 15:23:11 as
	Helical shifts generate two distinct conformers in the atomic resolution structure of the CheA phosphotransferase domain from Thermotoga maritima. [My Copy] Journal of molecular biology, Vol. 341, No. 5. (27 August 2004), pp. 1283-1294. by Cindy M. Quezada, Cristian Gradinaru, Melvin I. Simon, Alexandrine M. Bilwes, Brian R. Crane posted to chemotaxis by RebeccaHamer on 2009-11-11 15:20:54 as
	Structure of CheA, a Signal-Transducing Histidine Kinase [My Copy] Cell, Vol. 96, No. 1. (08 January 1999), pp. 131-141. by A. Bilwes, L. Alex, B. Crane, M. Simon posted to chemotaxis by RebeccaHamer on 2009-11-05 12:21:26 as
	Expression of CheA fragments which define domains encoding kinase, phosphotransfer, and CheY binding activities. [My Copy] Biochemistry, Vol. 32, No. 30. (3 August 1993), pp. 7623-7629. by R. V. Swanson, S. C. Schuster, M. I. Simon posted to chemotaxis by RebeccaHamer on 2009-11-05 12:18:48 as
	Receptor clustering and signal processing in chemotaxis [My Copy] Trends in Microbiology, Vol. 12, No. 12. (December 2004), pp. 569-576. by V. Sourjik posted to chemotaxis by RebeccaHamer on 2009-11-05 11:58:21 as along with 2 people chrn nsamways
	Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments [My Copy] Bioinformatics, Vol. 19, No. 6. (12 April 2003), pp. 750-755. by Elisabeth R. M. Tillier, Thomas W. H. Lui posted to correlated mutations by RebeccaHamer on 2009-05-12 10:24:24 as along with 1 person mgomes
	Correlated substitution analysis and the prediction of amino acid structural contacts [My Copy] Brief Bioinform (13 November 2007), bbm052. by David S. Horner, Walter Pirovano, Graziano Pesole posted to correlated mutations by RebeccaHamer on 2009-05-07 10:11:41 as along with 6 people and 3 groups mgomes qluo barry zwang sobolevnrm Lombardo_7 structural_bioinformatics Bioinformatics baker-group
	An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins. [My Copy] Protein Sci, Vol. 4, No. 3. (March 1995), pp. 506-520. by R. Sowdhamini, T. L. Blundell posted to correlated mutations by RebeccaHamer on 2009-05-06 16:58:55 as along with 3 people dimka skhadar medic0747
	Continuous and discontinuous domains: an algorithm for the automatic generation of reliable protein domain definitions. [My Copy] Protein science : a publication of the Protein Society, Vol. 4, No. 5. (May 1995), pp. 872-884. by A. S. Siddiqui, G. J. Barton posted to correlated mutations by RebeccaHamer on 2009-05-06 16:57:51 as
	Parser for protein folding units. [My Copy] Proteins, Vol. 19, No. 3. (July 1994), pp. 256-268. by L. Holm, C. Sander posted to correlated mutations by RebeccaHamer on 2009-05-06 16:54:17 as
	Correlated mutations contain information about protein-protein interaction [My Copy] Journal of Molecular Biology, Vol. 271, No. 4. (29 August 1997), pp. 511-523. by F. Pazos posted to correlated mutations by RebeccaHamer on 2009-05-06 16:44:51 as along with 8 people dfdong mgomes chica qluo gurkanbebek cjeans tale Lombardo_7
	Improving contact predictions by the combination of correlated mutations and other sources of sequence information. [My Copy] Folding & design, Vol. 2, No. 3. (1997) by O. Olmea, A. Valencia posted to correlated mutations by RebeccaHamer on 2009-05-06 16:42:57 as along with 2 people qluo analogAI
	Correlated mutations and residue contacts in proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 18, No. 4. (April 1994), pp. 309-317. by Ulrike Göbel, Chris Sander, Reinhard Schneider, Alfonso Valencia posted to correlated mutations by RebeccaHamer on 2009-05-06 16:41:20 as along with 9 people mgomes qluo mcbla gbart analogAI dgront cjeans jteyra Lombardo_7
	Finding important sites in protein sequences [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 23. (12 November 2002), pp. 14764-14771. by Peter J. Bickel, Katherina J. Kechris, Philip C. Spector, Gary J. Wedemayer, Alexander N. Glazer posted to correlated mutations by RebeccaHamer on 2009-05-06 16:38:56 as along with 4 people qluo analogAI nickolay sriram_s
	A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction. [My Copy] Proteins, Vol. 67, No. 1. (1 April 2007), pp. 142-153. by E. Eyal, M. Frenkel-Morgenstern, V. Sobolev, S. Pietrokovski posted to correlated mutations by RebeccaHamer on 2009-05-06 16:37:42 as along with 5 people dfdong qluo bicko cjeans Lombardo_7
	Progress in predicting inter-residue contacts of proteins with neural networks and correlated mutations. [My Copy] Proteins, Vol. Suppl 5 (2001), pp. 157-162. by P. Fariselli, O. Olmea, A. Valencia, R. Casadio posted to correlated mutations by RebeccaHamer on 2009-05-06 16:35:22 as
	Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7708-7713. by Hocine Madaoui, RaphaÃ«l Guerois posted to correlated mutations by RebeccaHamer on 2009-05-06 16:33:19 as along with 8 people dfdong qluo robfsouza orr cabbagesofdoom phoenixzxl bicko zwang
	Contact prediction using mutual information and neural nets [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by George Shackelford, Kevin Karplus posted to correlated mutations by RebeccaHamer on 2009-05-06 16:30:47 as along with 4 people mcbla cjeans RamuAnandakrishnan Lombardo_7
	H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Rainer Merkl, Matthias Zwick posted to correlated mutations by RebeccaHamer on 2009-05-06 16:30:05 as along with 3 people mgomes qluo xili03
	Rewiring the specificity of two-component signal transduction systems. [My Copy] Cell, Vol. 133, No. 6. (13 June 2008), pp. 1043-1054. by Jeffrey M. Skerker, Barrett S. Perchuk, Albert Siryaporn, et al.Emma A. Lubin, Orr Ashenberg, Mark Goulian, Michael T. Laub posted to correlated mutations by RebeccaHamer on 2009-05-06 14:53:25 as along with 5 people dfdong mgomes robfsouza jjray friendpine
	Protein–Protein Interactions More Conserved within Species than across Species [My Copy] PLoS Comput Biol, Vol. 2, No. 7. (21 July 2006), e79. by Sven Mika, Burkhard Rost posted to correlated mutations by RebeccaHamer on 2009-05-06 14:52:25 as along with 8 people and 2 groups karthikraman chica robfsouza jeremymiller chad_davis marcius skhadar dquest BioinfoCIPF SGU-CIPF
	Evolutionarily conserved networks of residues mediate allosteric communication in proteins [My Copy] Nature Structural & Molecular Biology, Vol. 10, No. 1. (16 December 2002), pp. 59-69. by Gurol M. Suel, Steve W. Lockless, Mark A. Wall, Rama Ranganathan posted to correlated mutations by RebeccaHamer on 2009-05-06 14:51:05 as along with 20 people and 3 groups mgomes qluo arjun_citeulike ynaito lna dimka marcius eckart_bindewald gbart analogAI nirfriedman dgront caporaso choonpeng efge carlescorbi mingzhi yalexeev weisblum ca3295 biomedical-nlp BioinfoCIPF SGU-CIPF
	Graphical models of protein-protein interaction specificity from correlated mutations and interaction data [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2 February 2009), pp. 911-929. by John Thomas, Naren Ramakrishnan, Chris Bailey-Kellogg posted to correlated mutations by RebeccaHamer on 2009-05-06 14:48:47 as along with 5 people and 2 groups dfdong sobolevnrm AliC qluo barry Orengo Group Journal Picks baker-group
	Similar chemistry, but different bond preferences in inter versus intra-protein interactions. [My Copy] Proteins (7 February 2008) by Mati Cohen, Dana Reichmann, Hani Neuvirth, Gideon Schreiber posted to correlated mutations by RebeccaHamer on 2009-05-06 14:47:40 as along with 5 people kgutwin viktor21614 bicko higueruelo Lombardo_7
	Potential ligand-binding residues in rat olfactory receptors identified by correlated mutation analysis. [My Copy] Receptors & channels, Vol. 3, No. 2. (1995), pp. 89-95. by M. S. Singer, L. Oliveira, G. Vriend, G. M. Shepherd posted to correlated mutations by RebeccaHamer on 2009-05-06 14:46:10 as
	Influence of conservation on calculations of amino acid covariance in multiple sequence alignments. [My Copy] Proteins, Vol. 56, No. 2. (1 August 2004), pp. 211-221. by Anthony A. Fodor, Richard W. Aldrich posted to correlated mutations by RebeccaHamer on 2009-05-06 14:42:11 as along with 10 people and 2 groups dfdong mgomes qluo ana gbart cjeans jlh64 mingzhi dgront Lombardo_7 structural_bioinformatics Bioinformatics
	Protein contact prediction using patterns of correlation [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 56, No. 4. (2004), pp. 679-684. by Nicholas Hamilton, Kevin Burrage, Mark A. Ragan, Thomas Huber posted to correlated mutations by RebeccaHamer on 2009-05-06 14:41:38 as along with 2 people dfdong cjeans
	Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (1 June 2006), pp. 832-845. by Inbal Halperin, Haim Wolfson, Ruth Nussinov posted to correlated mutations by RebeccaHamer on 2009-05-06 14:38:57 as along with 11 people dfdong mgomes qluo bicko gbart ramensky cjeans tale mingzhi friendpine Lombardo_7
	Correlated mutation analyses on super-family alignments reveal functionally important residues. [My Copy] Proteins, Vol. 76, No. 3. (15 August 2009), pp. 608-616. by Remko K. Kuipers, Henk-Jan J. Joosten, Eugene Verwiel, et al.Sjoerd Paans, Jasper Akerboom, John van der Oost, Nicole G. Leferink, Willem J. van Berkel, Gert Vriend, Peter J. Schaap posted to correlated mutation by RebeccaHamer on 2009-05-06 14:38:00 as along with 5 people and 3 groups mgomes qluo AliC barry sobolevnrm Orengo Group Journal Picks Bioinformatics baker-group
	Analysis of correlated mutations in HIV-1 protease using spectral clustering [My Copy] Bioinformatics, Vol. 24, No. 10. (15 May 2008), pp. 1243-1250. by Ying Liu, Eran Eyal, Ivet Bahar posted to correlated mutation by RebeccaHamer on 2009-05-06 14:36:40 as along with 3 people and 1 group Ema sobolevnrm bmaust baker-group
	Comparative protein structure modeling using MODELLER. [My Copy] Current protocols in protein science / editorial board, John E. Coligan ... [et al.], Vol. Chapter 2 (November 2007) by Narayanan Eswar, Ben Webb, Marc A. Marti-Renom, et al.M. S. Madhusudhan, David Eramian, Min-Yi Y. Shen, Ursula Pieper, Andrej Sali posted to modelling by RebeccaHamer on 2009-01-05 12:16:05 as along with 1 person bratwurst
	Helicobacter pylori Possesses Two CheY Response Regulators and a Histidine Kinase Sensor, CheA, Which Are Essential for Chemotaxis and Colonization of the Gastric Mucosa [My Copy] Infect. Immun., Vol. 68, No. 4. (1 April 2000), pp. 2016-2023. by Susan Foynes, Nick Dorrell, Stephen J. Ward, et al.Richard A. Stabler, Andy A. Mccolm, Andrew N. Rycroft, Brendan W. Wren posted to chemotaxis helicobacter by RebeccaHamer on 2008-08-29 14:36:43 as
	The chemotaxis response regulator CheY can catalyze its own acetylation. [My Copy] Journal of molecular biology, Vol. 359, No. 2. (2 June 2006), pp. 251-265. by R. Barak, J. Yan, A. Shainskaya, M. Eisenbach posted to acetylation chemotaxis chey by RebeccaHamer on 2008-05-28 10:26:09 as
	In vivo acetylation of CheY, a response regulator in chemotaxis of Escherichia coli. [My Copy] Journal of molecular biology, Vol. 376, No. 5. (7 March 2008), pp. 1260-1271. by J. Yan, R. Barak, O. Liarzi, A. Shainskaya, M. Eisenbach posted to acetylation chemotaxis chey by RebeccaHamer on 2008-05-28 10:25:29 as
	Phosphorylation of the Response Regulator CheV Is Required for Adaptation to Attractants during Bacillus subtilis Chemotaxis [My Copy] J. Biol. Chem., Vol. 276, No. 47. (16 November 2001), pp. 43618-43626. by Ece Karatan, Michael M. Saulmon, Michael W. Bunn, George W. Ordal posted to chemotaxis chev phosphorylation by RebeccaHamer on 2008-05-28 10:24:29 as
	Dual chemotaxis signaling pathways in Bacillus subtilis: a sigma D-dependent gene encodes a novel protein with both CheW and CheY homologous domains. [My Copy] Journal of bacteriology, Vol. 176, No. 9. (May 1994), pp. 2727-2735. by K. L. Fredrick, J. D. Helmann posted to chemotaxis chev chew chey signal by RebeccaHamer on 2008-05-28 10:23:03 as
	Chemotaxis in the human gastric pathogen Helicobacter pylori: different roles for CheW and the three CheV paralogues, and evidence for CheV2 phosphorylation [My Copy] Microbiology, Vol. 147, No. 9. (1 September 2001), pp. 2493-2504. by Marc S. Pittman, Matthew Goodwin, David J. Kelly posted to chemotaxis chev chew by RebeccaHamer on 2008-05-28 10:21:29 as
	Chemotaxis in Bacillus subtilis requires either of two functionally redundant CheW homologs. [My Copy] Journal of bacteriology, Vol. 176, No. 9. (May 1994), pp. 2736-2739. by M. M. Rosario, K. L. Fredrick, G. W. Ordal, J. D. Helmann posted to chemotaxis chev chew by RebeccaHamer on 2008-05-28 10:19:45 as
	Determinants of chemoreceptor cluster formation in Escherichia coli [My Copy] Molecular Microbiology, Vol. 61, No. 2. (July 2006), pp. 407-417. by Kentner, David, Thiem, et al. Sebastian, Hildenbeutel, Markus, Sourjik, Victor posted to chemotaxis cluster by RebeccaHamer on 2008-05-28 10:16:13 as along with 1 person dgreenf
	Chemotactic Signaling by an Escherichia coli CheA Mutant That Lacks the Binding Domain for Phosphoacceptor Partners [My Copy] J. Bacteriol., Vol. 186, No. 9. (1 May 2004), pp. 2664-2672. by Knut Jahreis, Tom B. Morrison, Andres Garzon, John S. Parkinson posted to chea chemotaxis by RebeccaHamer on 2008-05-28 10:14:02 as
	The positioning of cytoplasmic protein clusters in bacteria. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 21. (23 May 2006), pp. 8209-8214. by S. R. Thompson, G. H. Wadhams, J. P. Armitage posted to clusters localization by RebeccaHamer on 2008-05-28 10:12:11 as along with 2 people chrn madhadron
	Cluster II che Genes from Pseudomonas aeruginosa Are Required for an Optimal Chemotactic Response [My Copy] J. Bacteriol., Vol. 184, No. 16. (15 August 2002), pp. 4374-4383. by Abel Ferrandez, Andrew C. Hawkins, Douglas T. Summerfield, Caroline S. Harwood posted to aeruginosa che chemotaxis by RebeccaHamer on 2008-05-28 10:11:08 as
	Two different Pseudomonas aeruginosa chemosensory signal transduction complexes localize to cell poles and form and remould in stationary phase [My Copy] Molecular Microbiology, Vol. 61, No. 1. (July 2006), pp. 106-118. by Guvener, Zehra Tuzun, Tifrea, F. Delia, Harwood, S. Caroline posted to aeruginosa chemotaxis localization signal transduction by RebeccaHamer on 2008-05-28 10:03:56 as
	Cellular Stoichiometry of the Components of the Chemotaxis Signaling Complex [My Copy] J. Bacteriol., Vol. 186, No. 12. (15 June 2004), pp. 3687-3694. by Mingshan Li, Gerald L. Hazelbauer posted to chemotaxis signal stoichiometry by RebeccaHamer on 2008-05-28 10:02:02 as along with 1 person vladimirov
	Simulated diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli. [My Copy] J Bacteriol, Vol. 187, No. 1. (January 2005), pp. 45-53. by K. Lipkow, S. S. Andrews, D. Bray posted to chey diffusion by RebeccaHamer on 2008-05-28 10:00:18 as along with 7 people and 2 groups ocs chrn roland_ewald mattis23 vladimirov csanford gabe_rosser dIEMoSIRIS MoSi-Rostock
	Molecular model of a lattice of signalling proteins involved in bacterial chemotaxis. [My Copy] Nat Cell Biol, Vol. 2, No. 11. (November 2000), pp. 792-796. by T. S. Shimizu, N. Le Novère, M. D. Levin, A. J. Beavil, B. J. Sutton, D. Bray posted to chemotaxis model by RebeccaHamer on 2008-05-28 09:55:52 as along with 1 person lenov

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chemotaxis	49
mutations	28
correlated	26
chew	12
chey	12
localization	8
sphaeroides	8
chea	7
evolution	6
interaction	6
signal	6
rhodobacter	5
chev	4
interactions	4
transduction	4
aeruginosa	3
che	3
chemoreceptor	3
acetylation	2
mutation	2
phosphotransfer	2
tar	2
chea-short	1
chemoreceptors	1
cher	1
chez	1
cluster	1
clusters	1
diffusion	1
divergence	1
docking	1
flagellar	1
gliding	1
helicobacter	1
mcp	1
model	1
modelling	1
motif	1
motility	1
mutant	1
myxococcus	1
nucleotide-binding	1
operon	1
phosphorylation	1
phototaxis	1
prediction	1
protein-protein	1
pseudomonas	1
sequence	1
signals	1
stoichiometry	1
structural	1
structure	1
tlpc	1
tribe	1
tsr	1
vitro	1
vivo	1
wsp	1

RebeccaHamer's library 98 articles Export

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