Retchless's library 75 articles Export

	Developmental Patterning by Mechanical Signals in Arabidopsis [My Copy] Science, Vol. 322, No. 5908. (12 December 2008), pp. 1650-1655. by Olivier Hamant, Marcus G. Heisler, Henrik Jonsson, et al.Pawel Krupinski, Magalie Uyttewaal, Plamen Bokov, Francis Corson, Patrik Sahlin, Arezki Boudaoud, Elliot M. Meyerowitz, Yves Couder, Jan Traas posted to no-tag by Retchless on 2008-12-18 21:07:18 as along with 6 people tyvokka TheoBioPhys katiehumphry Stockman kshundyak icq242500260
	Survival of the sparsest: robust gene networks are parsimonious [My Copy] Mol Syst Biol, Vol. 4 (2008) by Robert D. Leclerc posted to no-tag by Retchless on 2008-08-07 22:07:33 as along with 8 people and 1 group mjoach josedavid sg45653 Borelli bootsy maralena bpcusack reyez GEB
	Parasites lead to evolution of robustness against gene loss in host signaling networks [My Copy] Molecular Systems Biology, Vol. 4 (15 July 2008) by Marcel Salathe, Orkun S. Soyer posted to no-tag by Retchless on 2008-08-07 22:06:20 as along with 6 people tomhebbron beete grahamc zwang jjray renatomilani
	On the nature of fur evolution: a phylogenetic approach in Actinobacteria. [My Copy] BMC evolutionary biology, Vol. 8 (25 June 2008), 185. by C. L. Santos, J. Vieira, F. Tavares, et al.D. R. Benson, L. S. Tisa, A. M. Berry, P. Moradas-Ferreira, P. Normand posted to no-tag by Retchless on 2008-07-24 21:14:58 as along with 2 people druvus fhsantanna
	Modularity of stress response evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 21. (27 May 2008), pp. 7500-7505. by Amoolya H. Singh, Denise M. Wolf, Peggy Wang, Adam P. Arkin posted to no-tag by Retchless on 2008-06-02 16:48:57 as along with 4 people roys biomcgary erel10 deanmalmgren
	PLoS Computational Biology: Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks [My Copy] posted to no-tag by Retchless on 2008-05-26 16:28:45 as
	The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing [My Copy] Science, Vol. 320, No. 5881. (6 June 2008), pp. 1344-1349. by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, et al.Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder posted to no-tag by Retchless on 2008-05-15 14:12:26 as along with 24 people and 1 group hzoltan bartjacobse GustavoLacerda debasis dbensasson cfvillalta rdowell poschm jmcq waszak michaelbarton djkt urgi stajich semrich caseybrown gjuggler biomcgary GeeSharpMinor mapplab faion bpcusack guhjy shurjo Mycology
	Protein abundance profiling of the Escherichia coli cytosol. [My Copy] BMC genomics, Vol. 9, No. 1. (27 February 2008), 102. by Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, et al.Matthias Mann, F. Ulrich Hartl, Michael J. Kerner, Dmitrij Frishman posted to no-tag by Retchless on 2008-04-01 18:22:23 as along with 2 people osilander brianb
	Winners don\|[rsquo]\|t punish [My Copy] Nature, Vol. 452, No. 7185. (20 March 2008), pp. 348-351. by Anna Dreber, David G. Rand, Drew Fudenberg, Martin A. Nowak posted to no-tag by Retchless on 2008-03-20 17:18:44 as along with 19 people and 3 groups halukbingol cosmizer anarinsk vtraag JeremyZucker cicada adriandefroment dullhunk gennaro Koh cam_webb shivakmr sen_cheng eegilbert yuhc cwmccabe hardin niallhaslam mits Soslab LABSS VisionLab
	Bet-hedging and epigenetic inheritance in bacterial cell development [My Copy] Proceedings of the National Academy of Sciences (6 March 2008), 0700463105. by Jan-Willem Veening, Eric J. Stewart, Thomas W. Berngruber, Francois Taddei, Oscar P. Kuipers, Leendert W. Hamoen posted to no-tag by Retchless on 2008-03-20 17:14:24 as along with 2 people jjray madhadron
	Evolutionary dynamics of prokaryotic transcriptional regulatory networks. [My Copy] Journal of molecular biology, Vol. 358, No. 2. (28 April 2006), pp. 614-633. by M. Madan Babu, S. A. Teichmann, L. Aravind posted to bacteria regulation systems by Retchless on 2007-12-18 20:38:40 as along with 8 people chica kaarsinogen jjray balabu tny tvdbulck timflutre cjeans
	The Evolution of Two-Component Systems in Bacteria Reveals Different Strategies for Niche Adaptation [My Copy] PLoS Computational Biology, Vol. 2, No. 11. (1 November 2006), e143. by Eric Alm, Katherine Huang, Adam Arkin posted to bacteria evolution regulation by Retchless on 2007-12-18 20:25:54 as along with 2 people erel10 treangen
	Long-Range Periodic Patterns in Microbial Genomes Indicate Significant Multi-Scale Chromosomal Organization [My Copy] PLoS Computational Biology, Vol. 2, No. 1. (1 January 2006), e2. by Timothy E. Allen, Nathan D. Price, Andrew R. Joyce, Bernhard Palsson posted to chromosome by Retchless on 2007-12-18 20:24:38 as
	Sequence and functional analyses of Haemophilus spp. genomic islands [My Copy] Genome Biology, Vol. 8 (08 November 2007), R237. by Mario Juhas, Peter M. Power, Rosalind M. Harding, et al.David J. P. Ferguson, Ioanna D. Dimopoulou, Abdel R. E. Elamin, Zaini Mohd-Zain, Derek W. Hood, Richard Adegbola, Alice Erwin, Arnold Smith, Robert S. Munson, Alistair Harrison, Lucielle Mansfield, Stephen Bentley, Derrick W. Crook posted to bacteria evolution islands by Retchless on 2007-12-18 19:45:12 as
	PLoS ONE: Adaptive Response of a Gene Network to Environmental Changes by Fitness-Induced Attractor Selection [My Copy] posted to bacteria evolvability expression feedback noise systems by Retchless on 2007-12-06 19:24:46 as
	Toward Automatic Reconstruction of a Highly Resolved Tree of Life [My Copy] Science, Vol. 311, No. 5765. (3 March 2006), pp. 1283-1287. by Francesca D. Ciccarelli, Tobias Doerks, Christian von Mering, Christopher J. Creevey, Berend Snel, Peer Bork posted to tree by Retchless on 2007-11-26 16:29:17 as along with 20 people and 6 groups pablocarb cmura adampah druvus fhsantanna kinestetika dparks knaseanka dpollard tny dchughes nirfriedman cmm azazello wenhan maximilianh cmzmasek lonshy diamantis Ema microbiology_nijmegen EisenLab FAB-lab G4ID Genetics-of-Gambling MBLAB
	Genome clashes in hybrids: insights from gene expression [My Copy] Heredity, Vol. aop, No. current. by C. R. Landry, D. L. Hartl, J. M. Ranz posted to no-tag by Retchless on 2007-11-26 16:10:52 as along with 1 person natstreet
	Identifying dynamical modules from genetic regulatory systems: applications to the segment polarity network [My Copy] BMC Bioinformatics, Vol. 8 (25 October 2007), 413. by David J. Irons, Nicholas A. M. Monk posted to no-tag by Retchless on 2007-11-14 23:35:41 as along with 2 people sWorgan tmmurali
	Programming gene expression with combinatorial promoters. [My Copy] Molecular systems biology, Vol. 3 (13 November 2007) by Robert Sidney S. Cox, Michael G. Surette, Michael B. Elowitz posted to systems by Retchless on 2007-11-14 23:34:04 as along with 16 people and 3 groups balabu Synthetic_Biology_Literature tmmurali austin dpollard balicea kengg dbikard margaritis lusk cjeans zwang discreteonyxorb cabbagezs Ema tresch TranscriptionalRegulationWithThermodynamicModels EisenLab SynBioSys
	Inference and Analysis of the Relative Stability of Bacterial Chromosomes [My Copy] Molecular Biology and Evolution, Vol. 23, No. 3. (March 2006), pp. 513-522. by Eduardo P. Rocha posted to dnamas by Retchless on 2007-11-12 23:42:28 as along with 3 people operon bjorns hillevi
	Identification of DNA Motifs Implicated in Maintenance of Bacterial Core Genomes by Predictive Modeling [My Copy] PLoS Genetics, Vol. 3, No. 9. (1 September 2007), e153. by David Halpern, Hélène Chiapello, Sophie Schbath, et al.Stéphane Robin, Christelle Hennequet-Antier, Alexandra Gruss, El posted to no-tag by Retchless on 2007-11-12 23:39:00 as along with 2 people cabbagezs Ema
	Lengths of chromosomal segments conserved since divergence of man and mouse. [My Copy] Proc Natl Acad Sci U S A, Vol. 81, No. 3. (February 1984), pp. 814-818. by J. H. Nadeau, B. A. Taylor posted to dnamas by Retchless on 2007-11-12 23:35:11 as along with 2 people AaronDarling maximilianh
	Temporal Fragmentation of Speciation in Bacteria [My Copy] Science, Vol. 317, No. 5841. (24 August 2007), pp. 1093-1096. by Adam C. Retchless, Jeffrey G. Lawrence posted to no-tag by Retchless on 2007-10-15 17:25:20 as along with 2 people AaronDarling operon
	Effects of body size and lifestyle on evolution of mammal life histories [My Copy] Proceedings of the National Academy of Sciences (12 October 2007), 0707725104. by Richard M. Sibly, James H. Brown posted to no-tag by Retchless on 2007-10-15 17:24:44 as
	PLoS ONE: Predicting Prokaryotic Ecological Niches Using Genome Sequence Analysis [My Copy] posted to no-tag by Retchless on 2007-09-10 23:22:04 as
	The Effect of Stochasticity on the Lac Operon: An Evolutionary Perspective [My Copy] PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e111. by Milan van Hoek, Paulien Hogeweg posted to expression feedback noise by Retchless on 2007-06-27 18:06:42 as along with 3 people madhadron proulx cjeans
	An empirical test of the concomitantly variable codon hypothesis [My Copy] PNAS (19 June 2007), 0701900104. by Lauren M. Merlo, Mark Lunzer, Antony M. Dean posted to coadapation codons by Retchless on 2007-06-27 18:01:53 as along with 2 people sebastien_vigneau cjeans
	Genetic evidence for complex speciation of humans and chimpanzees : Article : Nature [My Copy] posted to no-tag by Retchless on 2007-05-04 02:26:09 as
	ScienceDirect - Current Biology : Evolutionary Biology: How Did the Human Species Form? [My Copy] posted to no-tag by Retchless on 2007-05-04 02:25:14 as
	Genome-wide transcriptional plasticity underlies cellular adaptation to novel challenge [My Copy] Mol Syst Biol, Vol. 3 (24 April 2007) by Shay Stern, Tali Dror, Elad Stolovicki, Naama Brenner, Erez Braun posted to no-tag by Retchless on 2007-05-03 18:02:34 as along with 3 people kynn zwang bpcusack
	Wagner's canalization model [My Copy] Theoretical Population Biology, Vol. 71, No. 2. (March 2007), pp. 121-130. by Emilia Huerta-Sanchez, Rick Durrett posted to no-tag by Retchless on 2007-04-30 14:32:07 as
	Evolution of coadaptation in a two-locus epistatic system. [My Copy] Evolution Int J Org Evolution, Vol. 59, No. 11. (November 2005), pp. 2324-2332. by K. R. Takahasi, F. Tajima posted to no-tag by Retchless on 2007-04-25 16:51:16 as
	Constraints to genetic exchange support gene coadaptation in a tripartite RNA virus. [My Copy] PLoS Pathog, Vol. 3, No. 1. (January 2007) by F. Escriu, A. Fraile, F. García-Arenal posted to no-tag by Retchless on 2007-04-25 16:50:12 as
	MOLECULAR-FUNCTIONAL STUDIES OF ADAPTIVE GENETIC VARIATION IN PROKARYOTES AND EUKARYOTES - Annual Review of Genetics, 34(1):593 - Abstract [My Copy] posted to no-tag by Retchless on 2007-04-25 16:49:06 as
	Gene Cluster Analysis Method Identifies Horizontally Transferred Genes with High Reliability and Indicates that They Provide the Main Mechanism of Operon Gain in 8 Species of -Proteobacteria [My Copy] Molecular Biology and Evolution, Vol. 24, No. 3. (March 2007), pp. 805-813. by Homma, Keiichi, Fukuchi, et al. Satoshi, Nakamura, Yoji, Gojobori, Takashi, Nishikawa, Ken posted to no-tag by Retchless on 2007-04-25 16:43:30 as along with 1 person operon
	Protein Interactions Limit the Rate of Evolution of Photosynthetic Genes in Cyanobacteria [My Copy] Molecular Biology and Evolution, Vol. 22, No. 11. (November 2005), pp. 2179-2189. by Tuo Shi, Thomas S. Bibby, Lin Jiang, Andrew J. Irwin, Paul G. Falkowski posted to no-tag by Retchless on 2007-04-25 16:41:42 as along with 1 person tuoshi
	The Transition between Transcriptional Initiation and Elongation in E. coli Is Highly Variable and Often Rate Limiting [My Copy] Molecular Cell, Vol. 24, No. 5. (8 December 2006), pp. 747-757. by Nikos B. Reppas, Joseph T. Wade, George[no-Break Church, Kevin Struhl posted to no-tag by Retchless on 2007-04-09 02:01:38 as along with 1 person aswin
	An environmental signature for 323 microbial genomes based on codon adaptation indices [My Copy] Genome Biology, Vol. 7 (07 December 2006), R114. by Hanni Willenbrock, Carsten Friis, Agnieszka S. Juncker, David W. Ussery posted to no-tag by Retchless on 2007-03-20 03:38:18 as along with 3 people gpalidwor aswin marenzelleria
	Integrating high-throughput and computational data elucidates bacterial networks. [My Copy] Nature, Vol. 429, No. 6987. (6 May 2004), pp. 92-96. by M. W. Covert, E. M. Knight, J. L. Reed, M. J. Herrgard, B. O. Palsson posted to no-tag by Retchless on 2007-03-20 03:32:00 as along with 6 people and 2 groups lfriedl RMGraze alexg raiyar JeremyZucker srp33 kdl steinmetzlab
	Codon adaptation index as a measure of dominating codon bias [My Copy] Bioinformatics, Vol. 19, No. 16. (1 November 2003), pp. 2005-2015. by A. Carbone, A. Zinovyev, F. Kepes posted to no-tag by Retchless on 2007-03-20 03:31:48 as along with 3 people operon marenzelleria aaronsmith
	Error minimization explains the codon usage of highly expressed genes in Escherichia coli. [My Copy] Gene, Vol. 387, No. 1-2. (31 January 2007), pp. 150-155. by H. S. Najafabadi, J. Lehmann, M. Omidi posted to no-tag by Retchless on 2007-03-20 02:11:06 as
	Prediction of highly expressed genes in microbes based on chromatin accessibility [My Copy] BMC Molecular Biology, Vol. 8 (13 February 2007), 11. by Hanni Willenbrock, David W. Ussery posted to no-tag by Retchless on 2007-03-20 02:10:38 as
	Coevolution of codon usage and transfer RNA abundance [My Copy] Nature, Vol. 325, No. 6106. (19 February 1987), pp. 728-730. by Michael Bulmer posted to no-tag by Retchless on 2007-03-20 02:08:00 as along with 2 people codonusage operon
	Codon bias and gene expression [My Copy] FEBS Letters, Vol. 285, No. 2. (July 1991), pp. 165-169. by C. G. Kurland posted to no-tag by Retchless on 2007-03-20 01:56:09 as
	Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae [My Copy] PNAS, Vol. 104, No. 7. (13 February 2007), pp. 2402-2407. by G. N. Vemuri, M. A. Eiteman, J. E. Mcewen, L. Olsson, J. Nielsen posted to no-tag by Retchless on 2007-02-14 20:37:11 as
	Nearly Identical Paralogs: Implications for Maize (Zea mays L.) Genome Evolution [My Copy] Genetics, Vol. 175, No. 1. (1 January 2007), pp. 429-439. by Scott J. Emrich, Li Li, Tsui-Jung Wen, et al.Marna D. Yandeau-Nelson, Yan Fu, Ling Guo, Hui-Hsien Chou, Srinivas Aluru, Daniel A. Ashlock, Patrick S. Schnable posted to no-tag by Retchless on 2007-02-14 20:31:20 as along with 1 person semrich
	Control of the endonuclease activity of type I restriction-modification systems is required to maintain chromosome integrity following homologous recombination [My Copy] Molecular Microbiology, Vol. 60, No. 4. (May 2006), pp. 883-893. by Garry W. Blakely, Noreen E. Murray posted to restruction by Retchless on 2007-01-28 01:14:52 as
	Four new type I restriction enzymes identified in Escherichia coli clinical isolates. [My Copy] Nucleic Acids Res, Vol. 33, No. 13. (2005) by J. K. Kasarjian, Y. Kodama, M. Iida, K. Matsuda, J. Ryu posted to restriction by Retchless on 2007-01-28 01:14:45 as
	Sau1: a novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages. [My Copy] J Bacteriol, Vol. 188, No. 15. (August 2006), pp. 5578-5585. by D. E. Waldron, J. A. Lindsay posted to restriction by Retchless on 2007-01-28 01:11:46 as along with 3 people amccarthy CharlesM gwenknight
	The diversity of alleles at the hsd locus in natural populations of Escherichia coli. [My Copy] Genetics, Vol. 140, No. 4. (August 1995), pp. 1187-1197. by V. A. Barcus, A. J. Titheradge, N. E. Murray posted to restriction enzymes by Retchless on 2007-01-28 00:47:13 as

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bacteria	6
evolution	4
restriction	3
systems	3
dnamas	2
evolvability	2
expression	2
feedback	2
noise	2
operonprediction	2
regulation	2
aging	1
chromosome	1
coadapation	1
codon	1
codonbias	1
codons	1
enzymes	1
geneduplication	1
islands	1
population	1
restruction	1
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