Reference descriptions of cellular electrophysiology models Export

@article{citeulike:4522124, abstract = {Summary: In recent years there has been much development of the fundamental ideas underlying mathematical model curation in regard to models of biology. While much has been achieved in the realms of systems biology and bioinformatics, little progress has been made in relation to cellular electrophysiology modeling. The primary reason for slow progress in this field is the lack of a consistent and machine-readable reference description for a given model. CellML has been widely used to describe mathematical models of cellular electrophysiology in an unambiguous, machine-readable format. Through the use of well-annotated CellML models we propose a standard by which reference descriptions of cellular electrophysiology models can be similarly defined in an unambiguous, software independent, and machine-readable format. Adoption of this standard will provide a consistent technology by which cellular electrophysiology models can be curated. Availability: http://www.bioeng.nus.edu.sg/compbiolab/p2/ Contact: david.nickerson@nus.edu.sg Supplementary information: Example reference descriptions are available at http://www.bioeng.nus.edu.sg/compbiolab/p2/ 10.1093/bioinformatics/btn080}, author = {Nickerson, David P. and Corrias, Alberto and Buist, Martin L.}, citeulike-article-id = {4522124}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btn080}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/content/24/8/1112.abstract}, citeulike-linkout-2 = {http://bioinformatics.oxfordjournals.org/content/24/8/1112.full.pdf}, citeulike-linkout-3 = {http://view.ncbi.nlm.nih.gov/pubmed/18310619}, citeulike-linkout-4 = {http://www.hubmed.org/display.cgi?uids=18310619}, day = {15}, doi = {10.1093/bioinformatics/btn080}, journal = {Bioinformatics}, keywords = {cellml, cells, electrophysiology, simulating, standards}, month = {April}, number = {8}, pages = {1112--1114}, posted-at = {2009-05-27 10:17:36}, priority = {2}, title = {Reference descriptions of cellular electrophysiology models}, url = {http://dx.doi.org/10.1093/bioinformatics/btn080}, volume = {24}, year = {2008} }

TY - JOUR ID - citeulike:4522124 L3 - citeulike-article-id:4522124 N2 - Summary: In recent years there has been much development of the fundamental ideas underlying mathematical model curation in regard to models of biology. While much has been achieved in the realms of systems biology and bioinformatics, little progress has been made in relation to cellular electrophysiology modeling. The primary reason for slow progress in this field is the lack of a consistent and machine-readable reference description for a given model. CellML has been widely used to describe mathematical models of cellular electrophysiology in an unambiguous, machine-readable format. Through the use of well-annotated CellML models we propose a standard by which reference descriptions of cellular electrophysiology models can be similarly defined in an unambiguous, software independent, and machine-readable format. Adoption of this standard will provide a consistent technology by which cellular electrophysiology models can be curated. Availability: http://www.bioeng.nus.edu.sg/compbiolab/p2/ Contact: david.nickerson@nus.edu.sg Supplementary information: Example reference descriptions are available at http://www.bioeng.nus.edu.sg/compbiolab/p2/ 10.1093/bioinformatics/btn080 IS - 8 JF - Bioinformatics EP - 1114 TI - Reference descriptions of cellular electrophysiology models VL - 24 SP - 1112 KW - cellml KW - cells KW - electrophysiology KW - simulating KW - standards AU - Nickerson, David AU - Corrias, Alberto AU - Buist, Martin PY - 2008/04/15/ UR - http://dx.doi.org/10.1093/bioinformatics/btn080 ER -