TLVincent's library 34 articles Export

	Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. [My Copy] Journal of molecular biology, Vol. 120, No. 1. (25 March 1978), pp. 97-120. by J. Garnier, D. J. Osguthorpe, B. Robson posted to structure secondary predici inference bayesian by TLVincent on 2009-11-13 14:14:17 as
	An introduction to ROC analysis [My Copy] Pattern Recogn. Lett. In ROC Analysis in Pattern Recognition, Vol. 27, No. 8. (June 2006), pp. 861-874. by Tom Fawcett posted to roc by TLVincent on 2009-10-02 11:42:04 as along with 35 people and 6 groups singhsh module qluo q_w_e_r_t_y makrehchi Borelli mthomure sbarthelme jjrodriguez cen4ik jmetzen MosesCheckley ldietz vavi dquest sdvillal xiaoyan2006 dwf camu schlauchi vmoa drivard nklee imrchen kmdaily gsiwo tgyork idonaldson napvasconcelos cdeane haiyeong AbnerCYH isimpson guhjy nherveg Bioinformatics Crypto VT_DLRL Randomness LIVIA BergmanLab
	Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models [My Copy] Bioinformatics Research and Development (2007), pp. 292-302. by Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh posted to sequence secondary protein prediction coils coiled by TLVincent on 2009-10-02 11:40:55 as along with 1 person kgutwin
	The PDBFINDER database: a summary of PDB, DSSP and HSSP information with added value [My Copy] Comput. Appl. Biosci., Vol. 12, No. 6. (1 December 1996), pp. 525-529. by R. W. W. Hooft, C. Sander, M. Scharf, G. Vriend posted to structure protein pdb assignment by TLVincent on 2009-09-17 15:41:51 as
	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by Wolfgang Kabsch, Christian Sander posted to structure secondary prediction dssp by TLVincent on 2009-09-17 15:26:13 as along with 33 people dfdong barmak7282 Vadikus j3xucite scampos maria_hauser pablocarb rpetrenko carlosjavierna mijam wqia007 dsmueller niallhaslam saunders jwm sebk Diego_Prada pjcite kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted to structure protein pdb by TLVincent on 2009-09-16 14:23:34 as along with 45 people and 5 groups trishul krapnik barmak7282 viktor21614 badi ucbcjbm maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac tji higueruelo boris_aguilar sebk timg References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp beta
	Predicting helix orientation for coiled-coil dimers. [My Copy] Proteins, Vol. 72, No. 3. (15 August 2008), pp. 1048-1065. by James R. Apgar, Karl N. Gutwin, Amy E. Keating posted to prediction dimer coiled-coils by TLVincent on 2009-09-16 14:01:42 as along with 2 people oteri kgutwin
	How to Tell When Simpler, More Unified, or Less Ad Hoc Theories will Provide More Accurate Predictions [My Copy] Br J Philos Sci, Vol. 45, No. 1. (1 March 1994), pp. 1-35. by Malcolm Forster, Elliott Sober posted to selection prediction model by TLVincent on 2009-09-15 16:05:20 as
	Reconciling Model Selection and Prediction [My Copy] (20 Mar 2009) by George Casella, Guido Consonni posted to selection prediction model by TLVincent on 2009-09-15 16:04:21 as along with 3 people nurban shivak dah
	The Number of Partitions of a Set [My Copy] The American Mathematical Monthly, Vol. 71, No. 5. (1964), pp. 498-504. by Gian C. Rota posted to partitons number bell by TLVincent on 2009-09-15 15:59:38 as along with 4 people JoseBrox leoniedu ansobol dsquared
	Model Selection and Multi-Model Inference [My Copy] (04 December 2003) by Kenneth P. Burnham, David Anderson posted to regression multinomial logistic by TLVincent on 2009-09-15 15:57:10 as along with 8 people roodubh alexjfalcao brian neteler e2holmes cwmccabe RolandKappe dmajka
	Categorical data analysis [My Copy] In Categorical Data Analysis, No. 2. (2002) by A. Agresti edited by Wiley-Interscience posted to regression multinomial logistic data categorical analysis by TLVincent on 2009-09-15 15:48:14 as
	The packing of $α$-helices: simple coiled-coils [My Copy] Acta Crystallographica, Vol. 6, No. 8-9. (Sep 1953), pp. 689-697. by F. H. C. Crick posted to packing knobs-into-holes coiled-coils by TLVincent on 2009-09-15 15:35:02 as
	Molecular Modeling Of Proteins And Mathematical Prediction Of Protein Structure [My Copy] SIAM Review, Vol. 39 (1997), pp. 407-460. by Arnold Neumaier posted to structure protein prediction mathematical by TLVincent on 2009-09-15 15:33:45 as
	Comparative analysis of coiled-coil prediction methods. [My Copy] Journal of structural biology, Vol. 155, No. 2. (August 2006), pp. 140-145. by Markus Gruber, Johannes Söding, Andrei N. Lupas posted to region prediction coiled-coils algorithm by TLVincent on 2009-09-15 15:28:10 as along with 5 people and 1 group kgutwin oteri cjeans ca3295 marck Structural Biology Group TorVergata
	A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants. [My Copy] Science (New York, N.Y.), Vol. 262, No. 5138. (26 November 1993), pp. 1401-1407. by P. B. Harbury, T. Zhang, P. S. Kim, T. Alber posted to sequence packing oligomeric-state coiled-coils by TLVincent on 2009-09-15 15:20:11 as along with 5 people melting kgutwin gwenknight bethbromley ca3295
	Extended knobs-into-holes packing in classical and complex coiled-coil assemblies. [My Copy] Journal of structural biology, Vol. 144, No. 3. (December 2003), pp. 349-361. by John Walshaw, Derek N. Woolfson posted to packing knobs-into-holes coils coiled by TLVincent on 2009-09-04 13:44:07 as along with 4 people kgutwin martainn gbartbristol ca3295
	A new look at the statistical model identification [My Copy] Automatic Control, IEEE Transactions on, Vol. 19, No. 6. (06 January 2003), pp. 716-723. by H. Akaike posted to selection model aic by TLVincent on 2009-09-03 17:19:56 as along with 17 people and 4 groups anitabanerji Borelli sbarthelme filippone bennett_tg fabiobayer gwenknight tvdbulck michaelbarton jford ppeeling tyler abrentnall cursonivel1 ntvandehey stefanoallesina durduran Forest inventory and monitoring QFRMC_ConsumerCredit cursonivel1 Wisconsin PET
	Clustering of highly homologous sequences to reduce the size of large protein databases. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 3. (1 March 2001), pp. 282-283. by W. Li, L. Jaroszewski, A. Godzik posted to sequence proteins alignement algorithm by TLVincent on 2009-08-18 10:16:17 as along with 4 people and 1 group maria_hauser yylin Cortel caporaso biomedical-nlp
	Clustal W and Clustal X version 2.0 [My Copy] Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2947-2948. by M. A. Larkin, G. Blackshields, N. P. Brown, et al.R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M. Wallace, A. Wilm, R. Lopez, J. D. Thompson, T. J. Gibson, D. G. Higgins posted to sequence proteins alignement algorithm by TLVincent on 2009-08-18 10:14:00 as along with 18 people l00cas vprieto Copper_Calcio tomjad BioNica udivi Keksle hpm druvus treangen jwm cassj lisa1 ryanraaum bmaust alanrw mschofie marck
	PISCES: a protein sequence culling server. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 12. (12 August 2003), pp. 1589-1591. by Guoli Wang, Roland L. Dunbrack posted to sequence redundancy proteins chains alignement by TLVincent on 2009-08-17 16:55:24 as along with 10 people and 2 groups reyez barry aalibes kaarsinogen j3xucite dgront blackbart mloewer ezralanglois chgjb structural_bioinformatics Bioinformatics
	Predicting oligomerization states of coiled coils. [My Copy] Protein science : a publication of the Protein Society, Vol. 4, No. 8. (August 1995), pp. 1596-1607. by D. N. Woolfson, T. Alber posted to prediction oligomeric-state coiled-coils algorithm by TLVincent on 2009-08-12 17:10:55 as along with 4 people Lombardo_7 kgutwin ca3295 marck
	MultiCoil: a program for predicting two- and three-stranded coiled coils. [My Copy] Protein science : a publication of the Protein Society, Vol. 6, No. 6. (June 1997), pp. 1179-1189. by E. Wolf, P. S. Kim, B. Berger posted to prediction oligomeric-state coiled-coils algorithm by TLVincent on 2009-08-12 16:35:56 as along with 3 people and 1 group oteri kgutwin ca3295 Structural Biology Group TorVergata
	A Periodic Table of Coiled-Coil Protein Structures [My Copy] Journal of Molecular Biology, Vol. 385, No. 3. (23 January 2009), pp. 726-732. by Efrosini Moutevelis, Derek N. Woolfson posted to structures coiled-coils by TLVincent on 2009-08-12 16:31:03 as along with 4 people and 1 group pjkiley Lombardo_7 kgutwin patrickking KeatingJClub
	CC+: a relational database of coiled-coil structures. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D315-322. by Oliver D. Testa, Efrosini Moutevelis, Derek N. Woolfson posted to structures knobs-into-holes coiled-coils by TLVincent on 2009-08-12 16:29:56 as along with 4 people krapnik Zoltan_Barczikay patrickking kgutwin
	Socket: a program for identifying and analysing coiled-coil motifs within protein structures. [My Copy] Journal of molecular biology, Vol. 307, No. 5. (13 April 2001), pp. 1427-1450. by J. Walshaw, D. N. Woolfson posted to prediction knobs-into-holes coiled-coils by TLVincent on 2009-08-12 15:58:29 as along with 5 people oteri kgutwin martainn gbartbristol ca3295
	An HMM model for coiled-coil domains and a comparison with PSSM-based predictions. [My Copy] Bioinformatics (Oxford, England), Vol. 18, No. 4. (April 2002), pp. 617-625. by Mauro Delorenzi, Terry Speed posted to prediction coiled-coils algorithm by TLVincent on 2009-08-11 18:03:56 as along with 6 people kgutwin oteri hansen cjeans gwenknight ca3295
	Paircoil2: improved prediction of coiled coils from sequence [My Copy] Bioinformatics, Vol. 22, No. 3. (1 February 2006), pp. 356-358. by A. V. McDonnell, T. Jiang, A. E. Keating, B. Berger posted to prediction coiled-coil algorithm by TLVincent on 2009-08-11 17:50:23 as along with 1 person and 1 group oteri Structural Biology Group TorVergata
	Predicting coiled coils by use of pairwise residue correlations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 92, No. 18. (29 August 1995), pp. 8259-8263. by B. Berger, D. B. Wilson, E. Wolf, T. Tonchev, M. Milla, P. S. Kim posted to prediction coiled-coils algorithm by TLVincent on 2009-08-11 17:38:37 as along with 1 person kgutwin
	REPPER--repeats and their periodicities in fibrous proteins. [My Copy] Nucleic acids research, Vol. 33, No. Web Server issue. (1 July 2005) by Markus Gruber, Johannes Söding, Andrei N. Lupas posted to prediction coiled-coils algorithm by TLVincent on 2009-08-11 17:29:54 as
	Historical review: another 50th anniversary--new periodicities in coiled coils. [My Copy] Trends in biochemical sciences, Vol. 28, No. 12. (December 2003), pp. 679-685. by Markus Gruber, Andrei N. Lupas posted to stutters stammers sequence coiled-coils by TLVincent on 2009-08-11 17:27:48 as along with 2 people martainn pansapiens
	Predicting coiled coils from protein sequences. [My Copy] Science (New York, N.Y.), Vol. 252, No. 5010. (24 May 1991), pp. 1162-1164. by A. Lupas, M. Van Dyke, J. Stock posted to prediction coiled-coils algorithm by TLVincent on 2009-08-11 17:19:43 as along with 3 people kgutwin gwenknight ca3295
	Heptad breaks in alpha-helical coiled coils: stutters and stammers. [My Copy] Proteins, Vol. 26, No. 2. (October 1996), pp. 134-145. by J. H. Brown, C. Cohen, D. A. Parry posted to stutters stammers sequence coiled-coils by TLVincent on 2009-08-11 17:05:08 as along with 1 person TOchi
	Coiled-coils in alpha-helix-containing proteins: analysis of the residue types within the heptad repeat and the use of these data in the prediction of coiled-coils in other proteins. [My Copy] Bioscience reports, Vol. 2, No. 12. (December 1982), pp. 1017-1024. by D. A. Parry posted to proteins prediction coiled-coil by TLVincent on 2009-08-11 16:57:18 as along with 1 person kgutwin

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prediction	16
coiled-coils	15
algorithm	10
sequence	7
structure	5
knobs-into-holes	4
protein	4
proteins	4
alignement	3
model	3
oligomeric-state	3
packing	3
secondary	3
selection	3
coiled	2
coiled-coil	2
coils	2
logistic	2
multinomial	2
pdb	2
regression	2
stammers	2
structures	2
stutters	2
aic	1
analysis	1
assignment	1
bayesian	1
bell	1
categorical	1
chains	1
data	1
dimer	1
dssp	1
inference	1
mathematical	1
number	1
partitons	1
predici	1
redundancy	1
region	1
roc	1

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