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iSLIM: a comprehensive approach to mapping and characterizing gene regulatory networks

by: Sylvie Rockel, Marcel Geertz, Korneel Hens, Bart Deplancke, Sebastian J. Maerkl
Nucleic Acids Research, Vol. 41, No. 4. (1 February 2013), pp. e52-e52, doi:10.1093/nar/gks1323  Key: citeulike:12076436

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Abstract

Mapping gene regulatory networks is a significant challenge in systems biology, yet only a few methods are currently capable of systems-level identification of transcription factors (TFs) that bind a specific regulatory element. We developed a microfluidic method for integrated systems-level interaction mapping of TF–DNA interactions, generating and interrogating an array of 423 full-length Drosophila TFs. With integrated systems-level interaction mapping, it is now possible to rapidly and quantitatively map gene regulatory networks of higher eukaryotes.


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