Thaverkamp's bioinformatics [54 articles] Export Sort

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	Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models [My Copy] Nature Methods, Vol. 6, No. 9. (02 August 2009), pp. 673-676. by Arthur Brady, Steven L. Salzberg posted to metagenomics bioinformatics by Thaverkamp on 2009-08-26 08:19:28 as along with 9 people and 4 groups CorinYeats idoerg azazello robertrentzsch dakelley skembel sharpton jbhiatt stajich Orengo Group Journal Picks iSEEM Journal picks Mycology
	Evolution of web services in bioinformatics. [My Copy] Briefings in bioinformatics, Vol. 6, No. 2. (1 June 2005), pp. 178-188. by Pieter B. Neerincx, Jack A. Leunissen posted to bioinformatics by Thaverkamp on 2009-08-25 09:39:17 as along with 12 people and 2 groups artaban421 druvus lmichan flbarroso niallhaslam daforerog GLobbestael yas moborg incovoma mroos guhjy T_lab AID
	XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (07 October 2008), 420. by Daniel Frank posted to bioinformatics diversity by Thaverkamp on 2009-06-12 13:58:27 as along with 5 people and 3 groups vaulot jlgreen treangen ojabado nuin Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM
	Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (10 April 2009), e1000352. by James R. White, Niranjan Nagarajan, Mihai Pop posted to bioinformatics statistics by Thaverkamp on 2009-06-11 13:29:34 as along with 12 people and 2 groups jfr CorinYeats dayjm taylor73 hpaces sriesenfeld APRegier dswan druvus djkt skembel idoerg Orengo Group Journal Picks iSEEM
	GeneTools - Application for functional annotation and statistical hypothesis testing [My Copy] BMC Bioinformatics, Vol. 7 (24 October 2006), 470. by Vidar Beisvag, Frode K. R. Junge, Hallgeir Bergum, et al.Lars Jolsum, Stian Lydersen, Clara-Cecilie Gunther, Heri Ramampiaro, Mette Langaas, Arne K. Sandvik, Astrid Laegreid posted to bioinformatics by Thaverkamp on 2009-06-11 10:12:47 as along with 5 people nlapalu druvus guhjy aalibes rdiaz
	PyCogent: a toolkit for making sense from sequence [My Copy] Genome Biology, Vol. 8, No. 8. (21 August 2007), R171. by Rob Knight, Peter Maxwell, Amanda Birmingham, et al.Jason Carnes, J. Gregory Caporaso, Brett Easton, Michael Eaton, Micah Hamady, Helen Lindsay, Zongzhi Liu, Catherine Lozupone, Daniel McDonald, Michael Robeson, Raymond Sammut, Sandra Smit, Matthew Wakefield, Jeremy Widmann, Shandy Wikman, Stephanie Wilson, Hua Ying, Gavin Huttley posted to bioinformatics by Thaverkamp on 2009-06-11 09:33:08 as along with 2 people idoerg ryanraaum
	MetaGene: prokaryotic gene finding from environmental genome shotgun sequences [My Copy] Nucl. Acids Res., Vol. 34, No. 19. (14 November 2006), pp. 5623-5630. by Hideki Noguchi, Jungho Park, Toshihisa Takagi posted to bioinformatics gene metagenomics by Thaverkamp on 2009-06-08 08:00:07 as along with 5 people and 1 group dakelley jlgreen jmeppley alexl mcox iSEEM
	An application of statistics to comparative metagenomics. [My Copy] BMC bioinformatics, Vol. 7, No. 1. (20 March 2006) by Beltran Rodriguez-Brito, Forest Rohwer, Robert A. Edwards posted to bioinformatics metagenomics statistics by Thaverkamp on 2009-06-04 10:28:28 as along with 7 people and 1 group taylor73 jmeppley druvus knaseanka bluto carpi djkt iSEEM
	An efficient parallel approach for identifying protein families in large-scale metagenomic data sets [My Copy] In SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing (2008), pp. 1-10. by Changjun Wu, Ananth Kalyanaraman posted to bioinformatics data metagenomics by Thaverkamp on 2009-05-26 07:47:21 as along with 1 person and 1 group skembel iSEEM
	The RAST Server: rapid annotations using subsystems technology. [My Copy] BMC genomics, Vol. 9, No. 1. (08 February 2008), 75. by Ramy K. Aziz, Daniela Bartels, Aaron A. Best, et al.Matthew DeJongh, Terrence Disz, Robert A. Edwards, Kevin Formsma, Svetlana Gerdes, Elizabeth M. Glass, Michael Kubal, Folker Meyer, Gary J. Olsen, Robert Olson, Andrei L. Osterman, Ross A. Overbeek, Leslie K. McNeil, Daniel Paarmann, Tobias Paczian, Bruce Parrello, Gordon D. Pusch, Claudia Reich, Rick Stevens, Olga Vassieva, Veronika Vonstein, Andreas Wilke, Olga Zagnitko posted to annotation bioinformatics by Thaverkamp on 2009-05-13 12:42:19 as along with 10 people and 2 groups karinlag hexaquo azazello sgoetz stefanorb coela barriot druvus JeremyZucker klager Waikato - Erebus MetabolicModeling
	Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 219. by Eli Meyer, Galina Aglyamova, Shi Wang, et al.Jade B. Carter, David Abrego, John Colbourne, Bette Willis, Mikhail Matz posted to 454sequencing bioinformatics metagenomics by Thaverkamp on 2009-05-13 07:57:24 as along with 5 people and 1 group orzenil mlog jonilaserson stajich idoerg Mycology
	The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000160. by Marco Punta, Yanay Ofran posted to bioinformatics protein sequence structure by Thaverkamp on 2009-05-12 12:12:57 as along with 20 people and 1 group ucbcjbm pansapiens kiekyon niallhaslam daforerog Zalanszabo bpcusack Katje joseph_x_zhou taguchi sjcockell markchen ptrobajo chad_davis druvus mdstobbe giovenko nilanjanroy reyez GeeSharpMinor microbiology_nijmegen
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to assembly bioinformatics genome by Thaverkamp on 2009-05-12 11:25:11 as along with 17 people and 5 groups skembel n00c operon michaelbarton azazello dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot djkt Katje stajich semrich BergmanLab Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen Mycology
	Application of tetranucleotide frequencies for the assignment of genomic fragments [My Copy] Environmental Microbiology, Vol. 6, No. 9. (September 2004), pp. 938-947. by Hanno Teeling, Anke Meyerdierks, Margarete Bauer, Rudolf Amann, Frank O. Glöckner posted to bioinformatics data-mining software by Thaverkamp on 2009-05-12 10:51:36 as along with 7 people dakelley azazello druvus michC bluto george_g mcox
	TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (26 October 2004), 163. by Hanno Teeling, Jost Waldmann, Thierry Lombardot, Margarete Bauer, Frank Glockner posted to bioinformatics data-mining software by Thaverkamp on 2009-05-12 10:49:23 as along with 8 people and 1 group idoerg azazello druvus jmeppley michC bluto wenhan werwiesel Bioinformatics
	JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes [My Copy] BMC Bioinformatics, Vol. 9 (01 April 2008), 177. by Michael Richter, Thierry Lombardot, Ivaylo Kostadinov, et al.Renzo Kottmann, Melissa B. Duhaime, Jorg Peplies, Frank O. Glockner posted to bioinformatics data metagenomes software by Thaverkamp on 2009-05-12 10:40:03 as along with 4 people and 1 group treangen druvus wisdom_love beatrizfernandez Bioinformatics
	Use of simulated data sets to evaluate the fidelity of metagenomic processing methods [My Copy] Nature Methods, Vol. 4, No. 6. (29 April 2007), pp. 495-500. by Konstantinos Mavromatis, Natalia Ivanova, Kerrie Barry, et al.Harris Shapiro, Eugene Goltsman, Alice C. McHardy, Isidore Rigoutsos, Asaf Salamov, Frank Korzeniewski, Miriam Land, Alla Lapidus, Igor Grigoriev, Paul Richardson, Philip Hugenholtz, Nikos C. Kyrpides posted to binning bioinformatics metagenomics simulation by Thaverkamp on 2009-05-11 15:19:13 as along with 19 people and 6 groups klo CorinYeats dutilh dakelley taylor73 sriesenfeld skembel druvus Yanno oamg jmeppley bluto azazello GustavoLacerda carlk alexl mjetten jlgreen djkt 8_01 Glimcher_Lab Bioinformatics microbiology_nijmegen Green Lab iSEEM
	The Gaggle: an open-source software system for integrating bioinformatics software and data sources. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by P. T. Shannon, D. J. Reiss, R. Bonneau, N. S. Baliga posted to bioinformatics data by Thaverkamp on 2009-05-06 07:50:41 as along with 13 people and 3 groups Zephyrus druvus seemu daforerog guhjy julius dullhunk frohike jmuhlich cerami pablomendes waszak megraw Bioinformatics SysbioMPI-TCells SorgerLab
	The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications. [My Copy] BMC bioinformatics, Vol. 8 (19 November 2007), 456. by J. Christopher Bare, Paul T. Shannon, Amy K. Schmid, Nitin S. Baliga posted to bioinformatics by Thaverkamp on 2009-05-06 07:49:33 as along with 14 people and 1 group thomaskelder cwperth druvus kshameer lptolik guhjy jfr dullhunk neils ryanraaum mircea srp33 selatham megraw NCCT Lab Reading Group
	ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1424-1425. by You Jung Kim, Nikhil Teletia, Victor Ruotti, et al.Christopher A. Maher, Arul M. Chinnaiyan, Ron Stewart, James A. Thomson, Jignesh M. Patel posted to alignment bioinformatics sequence by Thaverkamp on 2009-05-06 07:47:58 as along with 14 people and 2 groups bsamal Julien_Fayolle jfr mmartin n00c guhjy nuin idonaldson AlexBateman bmajoros humburg druvus svenrahmann djkt Bioinformatics Journal picks
	The Bioperl Toolkit: Perl Modules for the Life Sciences [My Copy] Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618. by Jason E. Stajich, David Block, Kris Boulez, et al.Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, Ewan Birney posted to bioinformatics software by Thaverkamp on 2009-04-30 15:32:56 as along with 27 people and 2 groups akou ludaesch jsatkosk kiekyon Cortel brdwilde daforerog GustavoLacerda krapnik jmeppley chad_davis rvosa indigoviolet skhadar dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi ninch EisenLab FAB-lab
	Kalign - an accurate and fast multiple sequence alignment algorithm [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 298. by Timo Lassmann, Erik Sonnhammer posted to ali alignment bioinformatics methods software by Thaverkamp on 2009-04-30 14:09:54 as along with 8 people druvus maria_hauser BioNica johanviklund aalibes CharlesM knaseanka Haggan
	Binning sequences using very sparse labels within a metagenome [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 April 2008), 215. by Chon K. Chan, Arthur Hsu, Saman Halgamuge, Sen L. Tang posted to binning bioinformatics metagenomics by Thaverkamp on 2009-04-30 09:29:54 as along with 15 people and 3 groups CorinYeats ajsferreira skembel esyoun sriesenfeld jmeppley dakelley idoerg azazello druvus alexl mjetten werwiesel jlgreen djkt Bioinformatics microbiology_nijmegen iSEEM
	Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery [My Copy] BMC Genomics, Vol. 10 (29 April 2009), 203. by Matthew, Andrew J. Dewoody posted to bioinformatics pyrosequencing rarefaction sequencing by Thaverkamp on 2009-04-30 07:55:24 as along with 2 people and 1 group stajich Schmidtc Mycology
	A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm. [My Copy] BMC bioinformatics, Vol. 9 (07 October 2008), 419. by Sheila Podell, Terry Gaasterland, Eric E. Allen posted to bacteria bioinformatics database genome horizontal-gene-transfer method software by Thaverkamp on 2009-04-27 15:25:58 as along with 2 people and 1 group cgaugain barriot Bioinformatics
	Comparative metagenomics of microbial communities. [My Copy] Science (New York, N.Y.), Vol. 308, No. 5721. (22 April 2005), pp. 554-557. by Susannah Green G. Tringe, Christian von Mering, Arthur Kobayashi, et al.Asaf A. Salamov, Kevin Chen, Hwai W. Chang, Mircea Podar, Jay M. Short, Eric J. Mathur, John C. Detter, Peer Bork, Philip Hugenholtz, Edward M. Rubin posted to bioinformatics communities metagenomics microbial microbial-ecology by Thaverkamp on 2009-04-27 14:20:12 as along with 19 people and 6 groups CorinYeats hwright skembel Scis0000002 idoerg jbhiatt kozo-ni jmeppley AaronDarling azazello wenhan sgoetz bluto vrich sanchezbuelna mcox mjetten jlgreen djkt Orengo Group Journal Picks Microbial-Ecology anammox microbiology_nijmegen Green Lab iSEEM
	Prokaryotic Genomes and Diversity in Surface Ocean Waters: Interrogating the Global Ocean Sampling Metagenome [My Copy] Appl. Environ. Microbiol., Vol. 75, No. 7. (1 April 2009), pp. 2221-2229. by Erin J. Biers, Shulei Sun, Erinn C. Howard posted to bioinformatics marine metagenomics by Thaverkamp on 2009-04-27 14:10:38 as along with 3 people and 1 group rec3141 skembel EKotlarska iSEEM
	EnGenIUS -- Environmental Genome Informational Utility System. [My Copy] Journal of bioinformatics and computational biology, Vol. 6, No. 6. (December 2008), pp. 1193-1211. by M. Kaplarevic, A. E. Murray, S. C. Cary, G. R. Gao posted to bioinformatics environmental metagenomics methods software by Thaverkamp on 2009-04-27 12:58:50 as along with 1 person Nagy
	MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes [My Copy] Genome Research, Vol. 18, No. 1. (19 January 2008), pp. 188-196. by Brandi L. Cantarel, Ian Korf, Sofia M. C. Robb, et al.Genis Parra, Eric Ross, Barry Moore, Carson Holt, Alejandro Sánchez Alvarado, Mark Yandell posted to annotation bioinformatics by Thaverkamp on 2009-04-27 08:30:56 as along with 10 people nlapalu thegoose2 natstreet timflutre stajich GustavoLacerda urgi tharris jamselem orzenil
	Genome re-annotation: a wiki solution? [My Copy] Genome Biology, Vol. 8 (01 February 2007), 102. by Steven L. Salzberg posted to annotation bioinformatics by Thaverkamp on 2009-04-27 08:30:19 as along with 4 people operon druvus dullhunk AlexanderPico
	Genome Annotation [My Copy] Bioinformatics (2008), pp. 125-139. by Hideya Kawaji, Yoshihide Hayashizaki posted to annotation bioinformatics by Thaverkamp on 2009-04-27 08:28:53 as along with 1 person inesdesantiago
	The quest for orthologs: finding the corresponding gene across genomes [My Copy] Trends in Genetics, Vol. 24, No. 11. (24 November 2008), pp. 539-551. by A. Kuzniar, R. Vanham, S. Pongor, J. Leunissen posted to annotation bioinformatics by Thaverkamp on 2009-04-27 08:26:21 as along with 13 people kiekyon maximilianh orzenil kshameer carlk guhjy natstreet druvus treangen skembel gjuggler dchughes operon
	Genome data mining for everyone. [My Copy] BMB reports, Vol. 41, No. 11. (30 November 2008), pp. 757-764. by G. W. Lee, S. Kim posted to bioinformatics by Thaverkamp on 2009-04-27 08:24:51 as along with 3 people daforerog shoshin guhjy
	Genome and proteome annotation: organization, interpretation and integration [My Copy] Journal of The Royal Society Interface, Vol. 6, No. 31. (6 February 2009), pp. 129-147. by Gabrielle A. Reeves, David Talavera, Janet M. Thornton posted to bioinformatics by Thaverkamp on 2009-04-27 08:21:41 as along with 6 people operon bertelsen richardbickerton druvus dullhunk guhjy
	Jalview Version 2--a multiple sequence alignment editor and analysis workbench [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1189-1191. by Andrew M. Waterhouse, James B. Procter, David M. A. Martin, Michele Clamp, Geoffrey J. Barton posted to bioinformatics software by Thaverkamp on 2009-04-24 10:17:29 as along with 7 people tomjad calderonv dimka jamselem timflutre nuin jmeppley
	Multiple sequence alignments [My Copy] Current Opinion in Structural Biology, Vol. 15, No. 3. (June 2005), pp. 261-266. by Iain M. Wallace, Gordon Blackshields, Desmond G. Higgins posted to alignment bioinformatics by Thaverkamp on 2009-04-24 10:15:30 as along with 5 people BioNica martainn mdimmic bpb nklee
	BLAT--the BLAST-like alignment tool. [My Copy] Genome research, Vol. 12, No. 4. (1 April 2002), pp. 656-664. by W. James Kent posted to bioinformatics software by Thaverkamp on 2009-04-24 10:13:09 as along with 37 people and 3 groups azazello rshe dchughes rdowell gwallau druvus aprasad maria_hauser n00c sficklin cpwardell daveGerrard coela daforerog pwais umit mmartin paszkows operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz yoanjacquemin talponer bozdagd gpappas LabDros BergmanLab EisenLab
	Assembling the Marine Metagenome, One Cell at a Time [My Copy] PLoS ONE, Vol. 4, No. 4. (23 April 2009), e5299. by Tanja Woyke, Gary Xie, Alex Copeland, et al.José M. González, Cliff Han, Hajnalka Kiss, Jimmy H. Saw, Pavel Senin, Chi Yang, Sourav Chatterji, Jan-Fang Cheng, Jonathan A. Eisen, Michael E. Sieracki, Ramunas Stepanauskas posted to bioinformatics genomics metagenomics by Thaverkamp on 2009-04-24 10:05:45 as along with 12 people and 3 groups jonathaneisen CorinYeats inquil dakelley hwright jonilaserson jlgreen chocolate2009 jmeppley vaulot neils skoch3 iSEEM Papers recommended by the Roscoff Plankton Group Microbial-Ecology
	The minimum information about a genome sequence (MIGS) specification [My Copy] Nature Biotechnology, Vol. 26, No. 5. (08 May 2008), pp. 541-547. by Dawn Field, George Garrity, Tanya Gray, et al.Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas Thomson, Michael J. Allen, Samuel V. Angiuoli, Michael Ashburner, Nelson Axelrod, Sandra Baldauf, Stuart Ballard, Jeffrey Boore, Guy Cochrane, James Cole, Peter Dawyndt, Paul De Vos, Claude dePamphilis, Robert Edwards, Nadeem Faruque, Robert Feldman, Jack Gilbert, Paul Gilna, Frank O. Glockner, Philip Goldstein, Robert Guralnick, Dan Haft, David Hancock, Henning Hermjakob, Christiane Hertz-Fowler, Phil Hugenholtz, Ian Joint, Leonid Kagan, Matthew Kane, Jessie Kennedy, George Kowalchuk, Renzo Kottmann, Eugene Kolker, Saul Kravitz, Nikos Kyrpides, Jim Leebens-Mack, Suzanna E. Lewis, Kelvin Li, Allyson L. Lister, Phillip Lord, Natalia Maltsev, Victor Markowitz, Jennifer Martiny, Barbara Methe, Ilene Mizrachi, Richard Moxon, Karen Nelson, Julian Parkhill, Lita Proctor, Owen White, Susanna-Assunta Sansone, Andrew Spiers, Robert Stevens, Paul Swift, Chris Taylor, Yoshio Tateno, Adrian Tett, Sarah Turner, David Ussery, Bob Vaughan, Naomi Ward, Trish Whetzel, Ingio San Gil, Gareth Wilson, Anil Wipat posted to bioinformatics metagenomics by Thaverkamp on 2009-04-23 13:54:35 as along with 16 people and 1 group natstreet druvus barriot balajis thegoose2 idoerg sconlan Katje allysonlister jmeppley dullhunk guhjy tharris jamselem neils jfr microbiology_nijmegen
	Inference of population genetic parameters in metagenomics: A clean look at messy data [My Copy] Genome Res., Vol. 16, No. 10. (1 October 2006), pp. 1320-1327. by Philip L. Johnson, Montgomery Slatkin posted to bioinformatics data metagenomics by Thaverkamp on 2009-04-23 13:17:50 as along with 3 people and 1 group jmeppley bluto djkt iSEEM
	The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (19 September 2008), 386. by F. Meyer, D. Paarmann, M. D'Souza, et al.R. Olson, E. M. Glass, M. Kubal, T. Paczian, A. Rodriguez, R. Stevens, A. Wilke, J. Wilkening, R. A. Edwards posted to bioinformatics metagenomics by Thaverkamp on 2009-04-22 12:57:44 as along with 9 people and 1 group CorinYeats taylor73 idoerg druvus guhjy operon ojabado nuin neils Orengo Group Journal Picks
	NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 824-826. by Jacques Lagnel, Costas S. Tsigenopoulos, Ioannis Iliopoulos posted to bioinformatics blast software by Thaverkamp on 2009-04-21 09:56:25 as along with 5 people druvus nuin guhjy jmeppley agbiotec
	Sequence assembly [My Copy] Computational Biology and Chemistry, Vol. 33, No. 2. (April 2009), pp. 121-136. by K. Scheibye-Alsing, S. Hoffmann, A. Frankel, et al.P. Jensen, P. F. Stadler, Y. Mang, N. Tommerup, M. J. Gilchrist, A. B. Nygård, S. Cirera posted to bioinformatics by Thaverkamp on 2009-04-17 08:27:47 as along with 9 people darian GustavoLacerda n00c katholt orzenil guhjy natstreet robsyme druvus
	Visualization of genomic data with the Hilbert curve [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1231-1235. by Simon Anders posted to bioinformatics genomics by Thaverkamp on 2009-04-15 08:33:45 as along with 15 people and 1 group Yanno jfr jandot ewilban1 polivares inesdesantiago djkt behindtherabbit guhjy humburg svenrahmann jmeppley idonaldson rdiaz paszkows BergmanLab
	A statistical toolbox for metagenomics: assessing functional diversity in microbial communities [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (23 January 2008), 34. by Patrick Schloss, Jo Handelsman posted to bioinformatics community diversity metagenomics microbiology by Thaverkamp on 2008-04-08 09:05:37 as along with 14 people and 4 groups CorinYeats ajsferreira hwright orzenil taylor73 idoerg jonathaneisen skembel druvus jmeppley alexisfjdufresne mjetten bluto djkt Microbial-Ecology anammox microbiology_nijmegen iSEEM
	An analysis of the Sargasso Sea resource and the consequences for database composition. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by M. L. Tress, D. Cozzetto, A. Tramontano, A. Valencia posted to bioinformatics metagenomics sea by Thaverkamp on 2008-04-08 09:03:32 as along with 4 people and 3 groups operon ana eoghanharr jmeppley structural_bioinformatics Bioinformatics Microbial-Ecology
	CAMERA: A Community Resource for Metagenomics [My Copy] PLoS Biology, Vol. 5, No. 3. (1 March 2007), e75. by Rekha Seshadri, Saul A. Kravitz, Larry Smarr, Paul Gilna, Marvin Frazier posted to bioinformatics diversity genomics marine metagenomics sea by Thaverkamp on 2008-04-08 09:02:27 as along with 3 people and 1 group hwright jmeppley mariakmejia Microbial-Ecology
	The bacterial species definition in the genomic era. [My Copy] Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1475. (29 November 2006), pp. 1929-1940. by K. T. Konstantinidis, A. Ramette, J. M. Tiedje posted to bacteria bioinformatics genomics species by Thaverkamp on 2008-04-08 08:59:36 as along with 7 people and 3 groups dutilh druvus AaronDarling skembel treangen jmeppley kinestetika iSEEM Microbial-Ecology microbiology_nijmegen
	Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. [My Copy] PLoS Biol, Vol. 3, No. 5. (May 2005) by M. B. Sullivan, M. L. Coleman, P. Weigele, F. Rohwer, S. W. Chisholm posted to bioinformatics cyanophages ecology genomics prochlorococcus by Thaverkamp on 2008-02-15 10:46:35 as along with 1 person and 1 group bluto Microbial-Ecology
	Designing multiple degenerate primers via consecutive pairwise alignments [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Hamed S. Najafabadi, Noorossadat Torabi, Mahmood Chamankhah posted to bioinformatics design primer by Thaverkamp on 2008-01-28 08:22:54 as along with 1 person and 1 group guhjy Microbial-Ecology

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metagenomics	56
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bacteria	18
ecology	17
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community	13
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short-reads	2
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mats	1
unicellular	1
suppression_subtractive_hybridisation	1
micromonas	1
corals	1
functional	1
infinity	1
recombination	1
norway	1
quality-assessment	1
blast	1
comparison	1
simulation	1
rickettsia	1
subsea_floor	1
china	1
fuel	1
sharing	1
complexity	1
firmicutes	1
celegans	1
primer	1
ecosystem	1
brower	1
seep	1
ali	1
uncultured	1
networks	1
carbon	1
design	1
biology	1
rna	1
rshell	1
sludge	1
microbes	1
transposon	1
horizontal	1
phylopythia	1
pathways	1
photosystemii	1
anaerobic	1
system	1
mouse	1
workflow	1
dna	1
co2	1
phycobilisomes	1
concept	1
classification	1
fitness	1
coastal	1
phenotype	1
genomes	1
genomic	1
proxygenes	1
oceanography	1
metagenomic	1
colour	1
information	1
metabolics	1
genotype	1
methanogenesis	1
gold	1
enrichment	1
contamination	1
taverna	1
megan	1
picoeukaryotes	1
flow-cytometry	1
ebpr	1
thermophyl	1
sar11	1
cyanobium	1
cold-water	1
physiology	1
pathway	1
phenotypic-plasticity	1
picocyanobacteria	1
metagenomes	1
webtool	1
biovolume	1
green	1
rnai	1
shotgun	1
acquisition	1
cyanobacterium	1
compounds	1
phosphor	1
specie	1
bicarbonate	1
proteins	1
curation	1
virus-host-interaction	1
database	1
diatoms	1

Thaverkamp's bioinformatics [54 articles] Export Sort

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