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TheresaNiederberger's library [50 articles]

Recent papers added to TheresaNiederberger's library.
  • A literature network of human genes for high-throughput analysis of gene expression.
    Nat Genet, Vol. 28, No. 1. (May 2001), pp. 21-28.
    by TK Jenssen, A Laegreid, J Komorowski, E Hovig
    posted to diplomarbeit by TheresaNiederberger on 2008-07-13 22:26:29 as ** along with 9 people and 4 groups irenas miguel okarsligil lfriedl yas balajis benny dullhunk adoms dbk-lab kdl Bioinformatics T_lab
  • Extraction of semantic biomedical relations from text using conditional random fields
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Markus Bundschus, Mathaeus Dejori, Martin Stetter, Volker Tresp, Hans P Kriegel
    posted to diplomarbeit by TheresaNiederberger on 2008-07-13 22:23:31 as ** along with 4 people chad_davis jyuh bundschu naegele
  • Kernel approaches for genic interaction extraction.
    Bioinformatics (Oxford, England), Vol. 24, No. 1. (1 January 2008), pp. 118-126.
    by S Kim, J Yoon, J Yang
    posted to diplomarbeit by TheresaNiederberger on 2008-07-13 22:22:48 as **
  • Automatic extraction of biological information from scientific text: protein-protein interactions.
    Proc Int Conf Intell Syst Mol Biol (1999), pp. 60-67.
    by C Blaschke, MA Andrade, C Ouzounis, A Valencia
    posted to diplomarbeit by TheresaNiederberger on 2008-07-13 22:21:26 as ** along with 6 people and 3 groups satre Enro miguel yas helliontroy bundschu T_lab biomedical-nlp generif_paper
  • Human protein reference database--2006 update.
    Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006)
    by GR Mishra, M Suresh, K Kumaran, N Kannabiran, S Suresh, P Bala, K Shivakumar, N Anuradha, R Reddy, TM Raghavan, S Menon, G Hanumanthu, M Gupta, S Upendran, S Gupta, M Mahesh, B Jacob, P Mathew, P Chatterjee, KS Arun, S Sharma, KN Chandrika, N Deshpande, K Palvankar, R Raghavnath, R Krishnakanth, H Karathia, B Rekha, R Nayak, G Vishnupriya, HG Kumar, M Nagini, GS Kumar, R Jose, P Deepthi, SS Mohan, TK Gandhi, HC Harsha, KS Deshpande, M Sarker, TS Prasad, A Pandey
    posted to diplomarbeit by TheresaNiederberger on 2008-07-13 18:39:47 as **
  • KEGG for linking genomes to life and the environment
    Nucl. Acids Res. (12 December 2007), gkm882.
    by Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi
    posted to diplomarbeit by TheresaNiederberger on 2008-07-13 16:35:22 as ** along with 9 people natstreet hpaces massivemayhem irenas jyuh raiyar barriot renatomilani shung
  • Characterization and modeling of protein-protein interaction networks
    Physica A: Statistical Mechanics and its Applications, Vol. 352, No. 1. (1 July 2005), pp. 1-27.
    by Vittoria Colizza, Alessandro Flammini, Amos Maritan, Alessandro Vespignani
    posted to diplomarbeit by TheresaNiederberger on 2008-07-13 01:36:48 as read
  • Identification of significantly regulated pathways using ToPNet
    (2005)
    by Theresa Niederberger, Maria Piskarev, Florian Sohler, Ralf Zimmer
    posted to diplomarbeit by TheresaNiederberger on 2008-07-13 01:29:54 as **
  • ToPNet--an application for interactive analysis of expression data and biological networks.
    Bioinformatics (Oxford, England), Vol. 20, No. 9. (12 June 2004), pp. 1470-1471.
    by D Hanisch, F Sohler, R Zimmer
    posted to diplomarbeit by TheresaNiederberger on 2008-07-13 00:48:45 as read
  • Functional discovery via a compendium of expression profiles.
    Cell, Vol. 102, No. 1. (7 July 2000), pp. 109-126.
    by TR Hughes, MJ Marton, AR Jones, CJ Roberts, R Stoughton, CD Armour, HA Bennett, E Coffey, H Dai, YD He, MJ Kidd, AM King, MR Meyer, D Slade, PY Lum, SB Stepaniants, DD Shoemaker, D Gachotte, K Chakraburtty, J Simon, M Bard, SH Friend
    posted to no-tag by TheresaNiederberger on 2008-07-13 00:47:46 as read along with 9 people and 3 groups roys chasmand camster lfriedl nirfriedman nickluscombe patrycjam patrycja_missiuro naegele dbk-lab kdl EBI-regulation
  • Transcriptional regulation of the yeast gmp synthesis pathway by its end products.
    The Journal of biological chemistry, Vol. 276, No. 2. (12 January 2001), pp. 1523-1530.
    by M Escobar-Henriques, B Daignan-Fornier
    posted to diplomarbeit by TheresaNiederberger on 2008-07-13 00:45:52 as read
  • The T Cell Receptor as a Multicomponent Signalling Machine: CD4/CD8 Coreceptors and CD45 in T Cell Activation
    Annual Review of Immunology, Vol. 10, No. 1. (1992), pp. 645-674.
    by CA Janeway
    posted to diplomarbeit by TheresaNiederberger on 2008-07-12 22:45:33 as **
  • New methods for joint analysis of biological networks and expression data.
    Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1517-1521.
    by F Sohler, D Hanisch, R Zimmer
    posted to diplomarbeit by TheresaNiederberger on 2008-07-11 14:28:37 as ** along with 2 people cswinburne incovoma
  • Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by R Kueffner, K Fundel, R Zimmer
    posted to diplomarbeit by TheresaNiederberger on 2008-07-11 14:28:13 as ** along with 6 people and 2 groups irenas chad_davis yas fisherp incovoma vlachmore dbk-lab T_lab
  • Text Mining and Gene Expression Analysis Towards Combined Interpretation of High Throughput Data
    (2007)
    by K Fundel
    posted to diplomarbeit by TheresaNiederberger on 2008-07-11 14:27:19 as **
  • Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets
    Nature Genetics, Vol. 38, No. 3. (24 February 2006), pp. 285-293.
    by TKB Gandhi, Jun Zhong, Suresh Mathivanan, L Karthick, KN Chandrika, Sujatha S Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S Bader, Akhilesh Pandey
    posted to diplomarbeit by TheresaNiederberger on 2008-07-08 15:29:32 as ** along with 11 people and 2 groups cerca carlk balajis indigoviolet tny spavey cjeans alwinpremanand dejori Pao-Yang pmendes EisenLab FAB-lab
  • Coreference Resolution: A Survey
    (2005)
    by Pradheep Elango
    posted to diplomarbeit by TheresaNiederberger on 2008-06-09 20:02:53 as ***
  • An algorithm for suffix stripping
    Program: electronic library & information systems, Vol. 14, No. 3. (July 1980), pp. 130-137.
    by MF Porter
    posted to diplomarbeit by TheresaNiederberger on 2008-05-27 08:27:31 as ** along with 3 people dmeister AlisonBabeu asterix77
  • Accurate Unlexicalized Parsing
    (2003), pp. 423-430.
    by Dan Klein, Christopher D Manning
    edited by Erhard Hinrichs, Dan Roth
    posted to diplomarbeit by TheresaNiederberger on 2008-05-26 14:27:52 as **
  • Parsing Biomedical Literature
    Natural Language Processing – IJCNLP 2005 (2005), pp. 58-69.
    by Matthew Lease, Eugene Charniak
    posted to diplomarbeit by TheresaNiederberger on 2008-05-26 14:06:37 as *** along with 1 person dmcc
  • Benchmarking natural-language parsers for biological applications using dependency graphs
    BMC Bioinformatics, Vol. 8 (25 January 2007), 24.
    by Andrew B Clegg, Adrian J Shepherd
    posted to diplomarbeit by TheresaNiederberger on 2008-05-26 13:45:32 as read along with 2 people bhaddow kemo
  • Statistical Language Learning
    (1993)
    by Eugene Charniak
    posted to diplomarbeit by TheresaNiederberger on 2008-05-26 08:58:19 as read
  • PCFG Models of Linguistic Tree Representations
    Computational Linguistics, Vol. 24 (1998), pp. 613-632.
    by Mark Johnson
    posted to diplomarbeit by TheresaNiederberger on 2008-05-26 08:18:56 as read
  • Generating Typed Dependency Parses from Phrase Structure Parses
    (2006), pp. 449-454.
    by M Marneffe, B Maccartney, C Manning
    posted to diplomarbeit by TheresaNiederberger on 2008-05-25 17:05:20 as **
  • Fast Exact Inference with a Factored Model for Natural Language Parsing
    (2003), pp. 3-10.
    by Dan Klein, Christopher D Manning
    edited by S Becker, S Thrun, K Obermayer
    posted to diplomarbeit by TheresaNiederberger on 2008-05-25 16:58:01 as read
  • Introduction to the CoNLL-2000 Shared Task: Chunking
    (2000), pp. 127-132.
    by Erik T Sang, Sabine Buchholz
    edited by Claire Cardie, Walter Daelemans, Claire Nedellec, Erik T Sang
    posted to diplomarbeit by TheresaNiederberger on 2008-05-25 09:38:27 as read
  • Transformation-based learning in the fast lane
    (2001), pp. 1-8.
    by Grace Ngai, Radu Florian
    posted to diplomarbeit by TheresaNiederberger on 2008-05-25 09:31:22 as read
  • Part-of-speech tagging guidelines for the Penn Treebank Project
    (1990)
    by Beatrice Santorini
    posted to diplomarbeit by TheresaNiederberger on 2008-05-22 17:19:08 as read
  • MedPost: a part-of-speech tagger for bioMedical text.
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2320-2321.
    by L Smith, T Rindflesch, WJ Wilbur
    posted to diplomarbeit by TheresaNiederberger on 2008-05-22 16:14:22 as read along with 5 people and 4 groups irenas yas hpiwowar kkaiser vlachmore dbk-lab T_lab IEG dbmi-nlp
  • Morphology and Knowledge of Words
    (1993)
    by Eugene Charniak
    posted to diplomarbeit by TheresaNiederberger on 2008-05-22 10:03:44 as **
  • Speech and Language Processing: An Introduction to Natural Language Processing, Computational Linguistics, and Speech Recognition
    (2008)
    by Daniel Jurafsky, James H Martin
    posted to diplomarbeit by TheresaNiederberger on 2008-05-21 15:34:43 as **
  • Exact matching with a set of patterns
    (1997)
    by Dan Gusfield
    posted to diplomarbeit by TheresaNiederberger on 2008-05-20 13:29:27 as **
  • Overview of BioCreAtIvE task 1B: normalized gene lists.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by L Hirschman, M Colosimo, A Morgan, A Yeh
    posted to diplomarbeit by TheresaNiederberger on 2008-05-20 10:36:38 as ** along with 6 people and 2 groups satre yas helliontroy zlu wbaumgar vlachmore T_lab biomedical-nlp
  • A simple approach for protein name identification: prospects and limits.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by K Fundel, D Güttler, R Zimmer, J Apostolakis
    posted to diplomarbeit by TheresaNiederberger on 2008-05-20 10:10:51 as read along with 6 people and 1 group apostola chad_davis yas bhaddow gaudan incovoma T_lab
  • Gene and protein nomenclature in public databases
    BMC Bioinformatics, Vol. 7 (09 August 2006), 372.
    by Katrin Fundel, Ralf Zimmer
    posted to diplomarbeit by TheresaNiederberger on 2008-05-20 10:10:22 as read along with 3 people hpiwowar jacky957 incovoma
  • ProMiner: rule-based protein and gene entity recognition.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by D Hanisch, K Fundel, HT Mevissen, R Zimmer, J Fluck
    posted to diplomarbeit by TheresaNiederberger on 2008-05-20 10:09:13 as read along with 4 people and 1 group chad_davis yas zlu incovoma T_lab
  • Confirming protein-protein interactions by text mining
    (April 2006)
    by D Otasek, K Brown, I Jurisica
    posted to diplomarbeit by TheresaNiederberger on 2008-05-13 10:31:02 as **
  • A survey of current work in biomedical text mining.
    Brief Bioinform, Vol. 6, No. 1. (March 2005), pp. 57-71.
    by AM Cohen, WR Hersh
    posted to diplomarbeit by TheresaNiederberger on 2008-05-13 10:22:30 as read along with 17 people and 7 groups satre lillejul irenas carlblesius route145 yas natsu t11 hpiwowar fisherp biblio24 bhaddow johnkork c061978 kkaiser benfqt farzanehs dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab Evidence-based-medicine IEG
  • Frontiers of biomedical text mining: current progress
    Brief Bioinform (30 October 2007), bbm045.
    by Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, Kevin B Cohen
    posted to diplomarbeit by TheresaNiederberger on 2008-05-13 10:19:41 as read along with 7 people and 1 group irenas yggdrasil jyuh yas dullhunk hpiwowar wchapman dbmi-nlp
  • Text mining and its potential applications in systems biology.
    Trends Biotechnol (11 October 2006)
    by Sophia Ananiadou, Douglas B B Kell, Jun-Ichi I Tsujii
    posted to diplomarbeit by TheresaNiederberger on 2008-05-13 10:18:22 as read along with 11 people and 2 groups alanrw irenas jfr yas dullhunk fisherp jacky957 daniel_schober dejori pablomendes pmendes dbk-lab T_lab
  • RelExRelation extraction using dependency parse trees
    Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 365-371.
    by Fundel, Katrin, Kuffner, Robert, Zimmer, Ralf
    posted to diplomarbeit by TheresaNiederberger on 2008-05-13 10:15:32 as read along with 4 people satre chad_davis bhaddow vlachmore
  • Building a large annotated corpus of English: the penn treebank
    Comput. Linguist., Vol. 19, No. 2. (June 1993), pp. 313-330.
    by Mitchell P Marcus, Mary A Marcinkiewicz, Beatrice Santorini
    posted to diplomarbeit by TheresaNiederberger on 2008-05-13 10:10:03 as read
  • Generating Typed Dependency Parses from Phrase Structure Parses
    (2006)
    by Marie-Catherine de Marneffe, Bill Maccartney, Christopher D Manning
    posted to diplomarbeit by TheresaNiederberger on 2008-05-13 10:01:28 as read
  • Biomedical Language Processing: What's Beyond PubMed?
    Mol Cell, Vol. 21, No. 5. (3 March 2006), pp. 589-594.
    by L Hunter, KB Cohen
    posted to diplomarbeit by TheresaNiederberger on 2008-05-13 09:47:53 as read along with 7 people and 3 groups satre irenas andytseng yas hpiwowar caporaso jacky957 dbk-lab T_lab biomedical-nlp
  • Getting Started in Text Mining
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e20.
    by Bretonnel K Cohen, Lawrence Hunter
    posted to diplomarbeit by TheresaNiederberger on 2008-05-12 15:10:20 as read along with 13 people and 1 group jfr quianominorleo ulmer jyuh y4su0 yas dullhunk hpiwowar sebastien_vigneau shigepong cjeans wchapman sci91078 dbmi-nlp
  • Applications of Text Mining in Molecular Biology, from Name Recognition to Protein Interaction Maps
    (March 2005)
    by Martin Krallinger, Alfonso Valencis
    edited by Francisco Azuaje, Joaquin Dopazo
    posted to diplomarbeit by TheresaNiederberger on 2008-05-08 10:40:07 as read
  • Literature mining for the biologist: from information retrieval to biological discovery
    Nature Reviews Genetics, Vol. 7, No. 2. (2006), pp. 119-129.
    by Lars J Jensen, Jasmin Saric, Peer Bork
    posted to diplomarbeit by TheresaNiederberger on 2008-05-08 10:01:38 as read along with 24 people and 3 groups ibuch akastrin skumagai Enro jyuh kuhn yas dullhunk hpiwowar dgront caporaso zlu jacky957 lynnefox jdiggans cjeans ghattem michaelmampaey dejori jandot mircea farzanehs larsjuhljensen adoms T_lab biomedical-nlp ADMiRes
  • Status of text-mining techniques applied to biomedical text
    Drug Discovery Today, Vol. 11, No. 7-8. (April 2006), pp. 315-325.
    by Ramon A Erhardt, Reinhard Schneider, Christian Blaschke
    posted to diplomarbeit by TheresaNiederberger on 2008-05-08 10:00:32 as read along with 6 people and 1 group akastrin Enro jyuh hpiwowar ibuch mroos AID
  • GENOMICS AND NATURAL LANGUAGE PROCESSING
    Nat Rev Genet, Vol. 3, No. 8. (2002), pp. 601-610.
    by Mark D Yandell, William H Majoros
    posted to diplomarbeit by TheresaNiederberger on 2008-05-08 09:58:47 as read along with 4 people and 1 group bayesian yas jpestian dejori T_lab
  • Natural Language Processing and Systems Biology
    Artificial Intelligence Methods and Tools for Systems Biology (2004), pp. 147-173.
    by Bretonnel K Cohen, Lawrence Hunter
    posted to diplomarbeit by TheresaNiederberger on 2008-05-07 20:02:57 as read
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