ThomasDOtto's library 32 articles Export

Ordered by to_read.

	De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae. [My Copy] Genome research, Vol. 19, No. 2. (17 February 2009), pp. 294-305. by Josephine A. Reinhardt, David A. Baltrus, Marc T. Nishimura, William R. Jeck, Corbin D. Jones, Jeffery L. Dangl posted to solexa by ThomasDOtto on 2009-08-03 16:52:03 as along with 13 people and 2 groups michaelbarton pachorip robsyme orzenil AaronDarling druvus dakelley Huub_odc usagi-kirin abizar acn jbhiatt hpaces SIMR bioinformatics Bioinformatics
	Massively parallel sequencing of the polyadenylated transcriptome of C. elegans. [My Copy] Genome research (6 March 2009) by Ladeana W W. Hillier, Valerie Reinke, Philip Green, Martin Hirst, Marco A A. Marra, Robert H H. Waterston posted to elegans rna-seq by ThomasDOtto on 2009-06-25 13:44:29 as along with 1 person djkt
	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted to microarray rna-seq by ThomasDOtto on 2009-06-25 13:43:31 as along with 46 people and 2 groups cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda SIMR bioinformatics Mycology
	The origin of malignant malaria [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 35. (1 September 2009), pp. 14902-14907. by Stephen M. Rich, Fabian H. Leendertz, Guang Xu, et al.Matthew LeBreton, Cyrille F. Djoko, Makoah N. Aminake, Eric E. Takang, Joseph L. D. Diffo, Brian L. Pike, Benjamin M. Rosenthal, Pierre Formenty, Christophe Boesch, Francisco J. Ayala, Nathan D. Wolfe posted to malaria phylogenetic reichenowi by ThomasDOtto on 2009-08-05 09:22:40 as along with 2 people Geknitics GeeSharpMinor
	SNP-o-matic [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2434-2435. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to icorn mapper snp-o-matic by ThomasDOtto on 2009-07-29 17:54:29 as along with 11 people and 1 group hzoltan darian GeeSharpMinor daforerog natstreet misonneh druvus guhjy Zephyrus orzenil n00c Journal picks
	Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2878-2881. by Bas E. Dutilh, Martijn A. Huynen, Marc Strous posted to icorn mapping solexa by ThomasDOtto on 2009-08-06 15:50:33 as along with 7 people and 1 group dakelley druvus kinestetika jasontsai skembel sharpton jmeppley iSEEM
	Initial sequence of the chimpanzee genome and comparison with the human genome. [My Copy] Nature, Vol. 437, No. 7055. (1 September 2005), pp. 69-87. by Chimpanzee Sequencing and Analysis Consortium posted to chimp genome paper by ThomasDOtto on 2009-08-05 16:59:48 as along with 12 people and 3 groups rshe cannin chrn aprasad great_apes indigoviolet dullhunk djkt JeffR100 Garamonfok iris42 rvosa biodiversity_conservation EisenLab FAB-lab
	Comparison of next generation sequencing technologies for transcriptome characterization. [My Copy] BMC genomics, Vol. 10, No. 1. (1 August 2009), 347. by P. Kerr Wall, Jim Leebens-Mack, André S. Chanderbali, et al.Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn P. Tomsho, Yi Hu, John E. Carlson, Hong Ma, Stephan C. Schuster, Douglas E. Soltis, Pamela S. Soltis, Naomi Altman, Claude W. dePamphilis posted to comparison rnaseq by ThomasDOtto on 2009-08-05 11:52:41 as along with 19 people and 4 groups hzoltan daveGerrard daforerog feeldead n00c debasis jgill mqbphcw3 sotacam GustavoLacerda adamjamesreid dswan mlog gwallau ewilban1 jasontsai polivares natstreet druvus Journal picks Bioinformatics LabDros BergmanLab
	Deep sequencing of the zebrafish transcriptome response to mycobacterium infection [My Copy] Molecular Immunology (24 July 2009) by Zoltán Hegedűs, Anna Zakrzewska, Vilmos C. Ágoston, et al.Anita Ordas, Péter Rácz, Mátyás Mink, Herman P. Spaink, Annemarie H. Meijer posted to dge by ThomasDOtto on 2009-08-04 09:29:40 as along with 1 person hzoltan
	Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling [My Copy] PLoS ONE, Vol. 4, No. 7. (28 July 2009), e6323. by Nicola Palmieri, Christian Schlötterer posted to mapping rnaseq by ThomasDOtto on 2009-08-04 09:05:14 as along with 16 people and 3 groups torfinnnome hzoltan darian debasis mqbphcw3 stubrown Thaverkamp PabloMarin jasontsai heliopais guhjy cisevol n00c natstreet druvus jbhiatt Journal picks JLab BergmanLab
	Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications [My Copy] Bioinformatics, Vol. 24, No. 23. (1 December 2008), pp. 2776-2777. by Brian D. Ondov, Anjana Varadarajan, Karla D. Passalacqua, Nicholas H. Bergman posted to mapping reference rnaseqmal solid by ThomasDOtto on 2009-07-28 16:40:24 as along with 17 people hzoltan bozdagd fishtank burak n00c mmartin natstreet adijr druvus felsani xingxu azazello orzenil dswan pengchy cthachuk nuin
	piggyBac is an effective tool for functional analysis of the Plasmodium falciparum genome [My Copy] BMC Microbiology, Vol. 9 (07 May 2009), 83. by Bharath, John H. Adams posted to marlaria piggybac by ThomasDOtto on 2009-06-26 10:11:51 as along with 1 person GeeSharpMinor
	Molecular mechanisms of resistance in antimalarial chemotherapy: the unmet challenge. [My Copy] Annual review of pharmacology and toxicology, Vol. 45 (2005), pp. 565-585. by R. Arav-Boger, T. A. Shapiro posted to drug-resistence malaria by ThomasDOtto on 2009-06-25 22:54:30 as
	The intolerable burden of malaria: a new look at the numbers. [My Copy] The American journal of tropical medicine and hygiene, Vol. 64, No. 1-2 Suppl. (b 2001) by J. G. Breman, A. Egan, G. T. Keusch posted to malaria overview by ThomasDOtto on 2009-06-25 22:50:27 as
	Biological function of unannotated transcription during the early development of Drosophila melanogaster [My Copy] Nature Genetics, Vol. 38, No. 10. (03 September 2006), pp. 1151-1158. by Robert J. Manak, Sujit Dike, Victor Sementchenko, et al.Philipp Kapranov, Frederic Biemar, Jeff Long, Jill Cheng, Ian Bell, Srinka Ghosh, Antonio Piccolboni, Thomas R. Gingeras posted to drosophila novel transcriptome by ThomasDOtto on 2009-06-25 22:32:28 as along with 11 people and 7 groups roys inesdesantiago daveGerrard GeeSharpMinor emptyhb dpollard neveaire djkt wrowell Stew xingxu BergmanLab Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience Cline_lab
	Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome [My Copy] Science, Vol. 302, No. 5646. (31 October 2003), pp. 842-846. by Kayoko Yamada, Jun Lim, Joseph M. Dale, et al.Huaming Chen, Paul Shinn, Curtis J. Palm, Audrey M. Southwick, Hank C. Wu, Christopher Kim, Michelle Nguyen, Paul Pham, Rosa Cheuk, George Karlin-Newmann, Shirley X. Liu, Bao Lam, Hitomi Sakano, Troy Wu, Guixia Yu, Molly Miranda, Hong L. Quach, Matthew Tripp, Charlie H. Chang, Jeong M. Lee, Mitsue Toriumi, Marie M. Chan, Carolyn C. Tang, Courtney S. Onodera, Justine M. Deng, Kenji Akiyama, Yasser Ansari, Takahiro Arakawa, Jenny Banh, Fumika Banno, Leah Bowser, Shelise Brooks, Piero Carninci, Qimin Chao, Nathan Choy, Akiko Enju, Andrew D. Goldsmith, Mani Gurjal, Nancy F. Hansen, Yoshihide Hayashizaki, Chanda Johnson-Hopson, Vickie W. Hsuan, Kei Iida, Meagan Karnes, Shehnaz Khan, Eric Koesema, Junko Ishida, Paul X. Jiang, Ted Jones, Jun Kawai, Asako Kamiya, Cristina Meyers, Maiko Nakajima, Mari Narusaka, Motoaki Seki, Tetsuya Sakurai, Masakazu Satou, Racquel Tamse, Maria Vaysberg, Erika K. Wallender, Cecilia Wong, Yuki Yamamura, Shiaulou Yuan, Kazuo Shinozaki, Ronald W. Davis, Athanasios Theologis, Joseph R. Ecker posted to arabidopsis transcritpome by ThomasDOtto on 2009-06-25 22:31:33 as along with 4 people and 1 group lptolik sdinka kaspermunch xwbcn Bioinformatics
	A high-resolution map of transcription in the yeast genome [My Copy] PNAS, Vol. 103, No. 14. (4 April 2006), pp. 5320-5325. by Lior David, Wolfgang Huber, Marina Granovskaia, et al.Joern Toedling, Curtis J. Palm, Lee Bofkin, Ted Jones, Ronald W. Davis, Lars M. Steinmetz posted to transcriptome by ThomasDOtto on 2009-06-25 22:30:56 as along with 15 people and 2 groups oannes74 bartjacobse coela rdowell waszak tuck alexg eckart_bindewald dpollard entropy raiyar xingxu chasmand guhjy GeeSharpMinor EisenLab steinmetzlab
	Statistical estimation of cell-cycle progression and lineage commitment in Plasmodium falciparum reveals a homogeneous pattern of transcription in ex vivo culture. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (17 April 2009) by Jacob E E. Lemieux, Natalia Gomez-Escobar, Avi Feller, et al.Celine Carret, Alfred Amambua-Ngwa, Robert Pinches, Felix Day, Sue A A. Kyes, David J J. Conway, Chris C C. Holmes, Chris I I. Newbold posted to idc malaria statistic transcriptome by ThomasDOtto on 2009-06-25 14:47:31 as along with 1 person GeeSharpMinor
	Statistical inferences for isoform expression in RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 1026-1032. by Hui Jiang, Wing H. Wong posted to rna-seq statistic by ThomasDOtto on 2009-06-25 13:36:45 as along with 16 people and 2 groups jwfoley hzoltan heliopais stubrown GustavoLacerda woodson8 stajich guhjy ghattem djkt shikin pengchy vplagnol rschulz jmcq GeeSharpMinor Mycology SIMR bioinformatics
	RNA-Seq: a revolutionary tool for transcriptomics. [My Copy] Nature reviews. Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted to overview rna-seq by ThomasDOtto on 2009-06-25 13:35:25 as along with 41 people and 1 group hongkeun_park ngehlenborg hzoltan sandfire maren jwfoley urgi RNA-protein cthachuk heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb n00c burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor CUBES
	TopHat: discovering splice junctions with RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted to rna-seq site splice tool by ThomasDOtto on 2009-06-25 13:33:36 as along with 24 people and 2 groups cthachuk hzoltan jwfoley heliopais dakelley druvus GustavoLacerda stubrown polivares torfinnnome jmcq mtagaya jonilaserson gdb guhjy n00c ghattem xingxu djkt vplagnol bertelsen natstreet idoerg vmsr BergmanLab SIMR bioinformatics
	Mapping and quantifying mammalian transcriptomes by RNA-Seq. [My Copy] Nature methods, Vol. 5, No. 7. (30 July 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted to rna-seq by ThomasDOtto on 2009-06-25 13:31:35 as along with 42 people and 2 groups manduca cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago n00c GustavoG ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb Bioinformatics SIMR bioinformatics
	Basecalling of automated sequencer traces using phred. II. Error probabilities [My Copy] Genome Res, Vol. 8 (1998), pp. 186-194. by B. Ewing, P. Green posted to phred by ThomasDOtto on 2009-07-28 11:24:57 as
	Basecalling of automated sequencer traces using phred. I. Accuracy assessment. [My Copy] Genome Res., Vol. 8 (1998), pp. 175-185. by B. Ewing, L. Hillier, M. Wendl, P. Green posted to icorn phred by ThomasDOtto on 2009-07-28 11:24:57 as
	Consed: A graphical tool for sequence finishing [My Copy] Genome Res, Vol. 8, No. 3. (1998), pp. 195-202. by David Gordon, C. Abajian, P. Green posted to consed finishing icorn by ThomasDOtto on 2009-07-28 11:23:05 as
	Initial sequencing and analysis of the human genome [My Copy] Nature, Vol. 409, No. 6822. (15 February 2001), pp. 860-921. posted to 2001 genome human paper project icorn by ThomasDOtto on 2009-07-28 08:46:33 as along with 38 people and 3 groups n00c rshe timflutre bicko jmanning2k kentz humburg vplagnol mqbphcw3 psique timhubbard jo_davies daforerog taroleo micromassive wimufi sgoetz fisherp reyez bozdagd cthachuk Cortel dragonrez jnemecek gg Dax42 aprasad yas balajis xdeupi dullhunk dgront djkt olympos nagendraproj incovoma yoanjacquemin brant Proteinkinases T_lab LabCompMed
	Finishing the euchromatic sequence of the human genome. [My Copy] Nature, Vol. 431, No. 7011. (21 October 2004), pp. 931-945. by International Human Genome Sequencing Consortium posted to genome human paper by ThomasDOtto on 2009-07-28 08:40:10 as along with 18 people and 2 groups rshe timhubbard daforerog ilyashl winterschlaefer mirkocortese setar Cortel aprasad dullhunk hdopazo caporaso nickluscombe joshuashen tvdbulck antonkratz shikin blackm0k biomedical-nlp EBI-regulation
	Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains. [My Copy] Nucleic Acids Res, Vol. 34, No. 4. (2006), pp. 1166-1173. by M. Llinás, Z. Bozdech, E. D. Wong, A. T. Adai, J. L. DeRisi posted to malaria transcriptome by ThomasDOtto on 2009-06-25 22:53:15 as along with 2 people Sharpshoot shuzhens
	Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14. [My Copy] Nature, Vol. 419, No. 6906. (3 October 2002), pp. 531-534. by M. J. Gardner, S. J. Shallom, J. M. Carlton, et al.S. L. Salzberg, V. Nene, A. Shoaibi, A. Ciecko, J. Lynn, M. Rizzo, B. Weaver, B. Jarrahi, M. Brenner, B. Parvizi, L. Tallon, A. Moazzez, D. Granger, C. Fujii, C. Hansen, J. Pederson, T. Feldblyum, J. Peterson, B. Suh, S. Angiuoli, M. Pertea, J. Allen, J. Selengut, O. White, L. M. Cummings, H. O. Smith, M. D. Adams, J. C. Venter, D. J. Carucci, S. L. Hoffman, C. M. Fraser posted to genome malaria icorn by ThomasDOtto on 2009-06-25 22:52:01 as along with 1 person chica
	Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. [My Copy] Nature, Vol. 419, No. 6906. (3 October 2002), pp. 527-531. by N. Hall, A. Pain, M. Berriman, et al.C. Churcher, B. Harris, D. Harris, K. Mungall, S. Bowman, R. Atkin, S. Baker, A. Barron, K. Brooks, C. O. Buckee, C. Burrows, I. Cherevach, C. Chillingworth, T. Chillingworth, Z. Christodoulou, L. Clark, R. Clark, C. Corton, A. Cronin, R. Davies, P. Davis, P. Dear, F. Dearden, J. Doggett, T. Feltwell, A. Goble, I. Goodhead, R. Gwilliam, N. Hamlin, Z. Hance, D. Harper, H. Hauser, T. Hornsby, S. Holroyd, P. Horrocks, S. Humphray, K. Jagels, K. D. James, D. Johnson, A. Kerhornou, A. Knights, B. Konfortov, S. Kyes, N. Larke, D. Lawson, N. Lennard, A. Line, M. Maddison, J. McLean, P. Mooney, S. Moule, L. Murphy, K. Oliver, D. Ormond, C. Price, M. A. Quail, E. Rabbinowitsch, M. A. Rajandream, S. Rutter, K. M. Rutherford, M. Sanders, M. Simmonds, K. Seeger, S. Sharp, R. Smith, R. Squares, S. Squares, K. Stevens, K. Taylor, A. Tivey, L. Unwin, S. Whitehead, J. Woodward, J. E. Sulston, A. Craig, C. Newbold, B. G. Barrell posted to genome malaria icorn by ThomasDOtto on 2009-06-25 22:51:49 as
	Discovery of Gene Function by Expression Profiling of the Malaria Parasite Life Cycle [My Copy] Science, Vol. 301, No. 5639. (12 September 2003), pp. 1503-1508. by Karine G. Le Roch, Yingyao Zhou, Peter L. Blair, et al.Muni Grainger, Kathleen J. Moch, David J. Haynes, De La, Anthony A. Holder, Serge Batalov, Daniel J. Carucci, Elizabeth A. Winzeler posted to malaria transcriptome by ThomasDOtto on 2009-06-25 22:50:03 as along with 5 people nedwards Sharpshoot GeeSharpMinor balicea shuzhens
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to alternative rna-seq splice by ThomasDOtto on 2009-06-25 13:36:04 as along with 20 people hzoltan torfinnnome n00c ericrpaquet jonilaserson giovanni frohike fenghezi jfr zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor

Note: You may cite this page as: http://www.citeulike.org/user/ThomasDOtto/order/to_read

malaria	8
icorn	7
rna-seq	7
genome	5
transcriptome	5
mapping	3
paper	3
human	2
overview	2
phred	2
rnaseq	2
solexa	2
splice	2
statistic	2
2001	1
alternative	1
arabidopsis	1
chimp	1
comparison	1
consed	1
dge	1
drosophila	1
drug-resistence	1
elegans	1
finishing	1
idc	1
mapper	1
marlaria	1
microarray	1
novel	1
phylogenetic	1
piggybac	1
project	1
reference	1
reichenowi	1
rnaseqmal	1
site	1
snp-o-matic	1
solid	1
tool	1
transcritpome	1

ThomasDOtto's library 32 articles Export

ThomasDOtto's tags