Vincent_Rouilly's library 377 articles Export

	Genomic location analysis by ChIP-Seq [My Copy] Journal of Cellular Biochemistry, Vol. 107, No. 1. (1 May 2009), pp. 11-18. by Artem Barski, Keji Zhao posted to transcription_factors sequence dna chip-sequence analysis by Vincent_Rouilly on 2009-11-05 16:51:21 as along with 9 people stubrown guhjy hagechouchin443 tonamswish humburg ewilban1 talponer cassj polivares
	Extracting transcription factor targets from ChIP-Seq data [My Copy] Nucl. Acids Res., Vol. 37, No. 17. (1 September 2009), e113. by Geetu Tuteja, Peter White, Jonathan Schug, Klaus H. Kaestner posted to transcription_factors sequence dna chip-sequence analysis by Vincent_Rouilly on 2009-11-05 16:49:52 as along with 13 people and 4 groups mfgreen ewilban1 idonaldson guhjy mkiyer rschulz fenghezi clearbluespring thegoose robeirne inesdesantiago malcook polivares Chinnaiyan Lab SIMR bioinformatics BergmanLab Journal picks
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to transcription_factors sequence dna chip-sequence analysis by Vincent_Rouilly on 2009-11-05 16:47:38 as along with 23 people and 2 groups darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz mcm polivares gdb ghattem yadadi djkt stajich mdperry fpattyn bcondon idonaldson caseybrown kengg SIMR bioinformatics Mycology
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to transcription_factors sequence chip-sequence bayesian analysis by Vincent_Rouilly on 2009-11-05 16:46:45 as along with 11 people and 4 groups tonamswish dswan fenghezi inesdesantiago idonaldson polivares mkiyer druvus stajich humburg rschulz Bioinformatics JLab BergmanLab Mycology
	The role of mRNA structure in translational control in bacteria. [My Copy] RNA biology, Vol. 6, No. 2. (n 2009), pp. 153-160. by Thomas Geissmann, Stefano Marzi, Pascale Romby posted to translation mrna gene_expression control by Vincent_Rouilly on 2009-11-05 08:02:39 as
	Analysis of combinatorial cis-regulation in synthetic and genomic promoters [My Copy] Nature, Vol. 457, No. 7226. (23 November 2008), pp. 215-218. by Jason Gertz, Eric D. Siggia, Barak A. Cohen posted to yeast transcription synthetic promoter by Vincent_Rouilly on 2009-10-21 11:59:40 as along with 17 people and 4 groups pcarbo emptyhb TRHvidsten rpatward jbhiatt lusk maximilianh roys dpollard druvus sebastien_vigneau pengchy sandersl djkt siebert isimpson xianjun TranscriptionalRegulationWithThermodynamicModels RockmanLab cis-regulatory-evolution microbiology_nijmegen
	Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing. [My Copy] BMC genomics, Vol. 10 (21 January 2009), 37. by Philippe Lefrançois, Ghia M. Euskirchen, Raymond K. Auerbach, et al.Joel Rozowsky, Theodore Gibson, Christopher M. Yellman, Mark Gerstein, Michael Snyder posted to yeast transcription_factors transcription chip-seq by Vincent_Rouilly on 2009-10-20 15:52:37 as along with 5 people guhjy lusk emptyhb WanderingAengus abizar
	BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3439-3440. by S. Durinck, Y. Moreau, A. Kasprzyk, et al.S. Davis, B. De Moor, A. Brazma, W. Huber posted to software r metabolic_networks metabolic_engineering database annotation by Vincent_Rouilly on 2009-10-20 11:51:34 as along with 4 people kshameer dullhunk fisherp incovoma
	SubpathwayMiner: a software package for flexible identification of pathways [My Copy] Nucl. Acids Res. (25 August 2009), gkp667. by Chunquan Li, Xia Li, Yingbo Miao, et al.Qianghu Wang, Wei Jiang, Chun Xu, Jing Li, Junwei Han, Fan Zhang, Binsheng Gong, Liangde Xu posted to software sbml r pathway opensource metabolic_engineering by Vincent_Rouilly on 2009-10-20 11:23:08 as along with 5 people ptrobajo irenas renatomilani brianb neils
	Direct methods for studying transcription regulatory proteins and RNA polymerase in bacteria [My Copy] Current Opinion in Microbiology, Vol. 12, No. 5. (15 October 2009), pp. 531-535. by David C. Grainger, David J. Lee, Stephen J. W. Busby posted to transcription_factors transcription rnap promoter chip by Vincent_Rouilly on 2009-10-20 11:06:59 as
	A modified consumer inkjet for spatiotemporal control of gene expression. [My Copy] PloS one, Vol. 4, No. 9. (18 September 2009), e7086. by Daniel J. Cohen, Roberto C. Morfino, Michel M. Maharbiz posted to reaction_diffusion promoter inducible gene_expression equipment diy automation by Vincent_Rouilly on 2009-10-06 16:01:50 as along with 1 person scmelton
	Systems biology for industrial strains and fermentation processes—Example: Amino acids [My Copy] Journal of Biotechnology, Vol. 129, No. 2. (30 April 2007), pp. 181-190. by R. Takors, B. Bathe, M. Rieping, S. Hans, R. Kelle, K. Huthmacher posted to systems_biology omics industrial_strains industrial_applications by Vincent_Rouilly on 2009-10-05 21:28:39 as
	Importance of systems biology in engineering microbes for biofuel production. [My Copy] Current opinion in biotechnology, Vol. 19, No. 3. (June 2008), pp. 228-234. by Aindrila Mukhopadhyay, Alyssa M. Redding, Becky J. Rutherford, Jay D. Keasling posted to systems_biology review biofuels by Vincent_Rouilly on 2009-10-01 21:11:35 as
	Metabolic engineering for advanced biofuels production from Escherichia coli. [My Copy] Current opinion in biotechnology, Vol. 19, No. 5. (12 October 2008), pp. 414-419. by Shota Atsumi, James C. Liao posted to review biofuels by Vincent_Rouilly on 2009-10-01 21:11:04 as along with 2 people csanford niubi100
	Engineering metabolic systems for production of advanced fuels. [My Copy] Journal of industrial microbiology & biotechnology, Vol. 36, No. 4. (April 2009), pp. 471-479. by Yajun Yan, James C. Liao posted to review biofuels by Vincent_Rouilly on 2009-10-01 21:10:32 as
	Expanding the repertoire of biofuel alternatives through metabolic pathway evolution. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 4. (27 January 2009), pp. 965-966. by Mattheos A. Koffas posted to protein_engineering metabolic_engineering biofuel by Vincent_Rouilly on 2009-10-01 21:09:42 as along with 3 people NathanDunn renatomilani welschra
	Challenges in Engineering Microbes for Biofuels Production [My Copy] Science, Vol. 315, No. 5813. (9 February 2007), pp. 801-804. by Gregory Stephanopoulos posted to review biofuels by Vincent_Rouilly on 2009-10-01 21:03:58 as along with 3 people apostola operon kdang
	Helicase-dependent isothermal DNA amplification. [My Copy] EMBO reports, Vol. 5, No. 8. (August 2004), pp. 795-800. by Myriam Vincent, Yan Xu, Huimin Kong posted to pcr isothermal helicase dna amplification by Vincent_Rouilly on 2009-10-01 11:23:44 as along with 1 person bborang
	Enhancing helicase-dependent amplification by fusing the helicase with the DNA polymerase. [My Copy] Gene, Vol. 420, No. 1. (15 August 2008), pp. 17-22. by Aurélie Motré, Ying Li, Huimin Kong posted to pcr isothermal helicase dna amplification by Vincent_Rouilly on 2009-10-01 11:20:52 as
	Protein engineering in designing tailored enzymes and microorganisms for biofuels production [My Copy] Current Opinion in Biotechnology (05 August 2009) by Fei Wen, Nikhil U. Nair, Huimin Zhao posted to review protein_engineering cellulases biofuels by Vincent_Rouilly on 2009-09-30 16:42:04 as
	Cellulases and biofuels [My Copy] Current Opinion in Biotechnology, Vol. 20, No. 3. (08 June 2009), pp. 295-299. by David B. Wilson posted to review cellulases biofuels by Vincent_Rouilly on 2009-09-30 16:38:51 as along with 2 people barmak7282 Winzer
	A family of thermostable fungal cellulases created by structure-guided recombination. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 14. (7 April 2009), pp. 5610-5615. by Pete Heinzelman, Christopher D. Snow, Indira Wu, et al.Catherine Nguyen, Alan Villalobos, Sridhar Govindarajan, Jeremy Minshull, Frances H. Arnold posted to synthetic_biology enzymes cellulose cellulases biofuels by Vincent_Rouilly on 2009-09-30 16:36:59 as along with 2 people Winzer oteri
	Engineering for biofuels: exploiting innate microbial capacity or importing biosynthetic potential? [My Copy] Nature Reviews Microbiology, Vol. 7, No. 10. (01 October 2009), pp. 715-723. by Hal Alper, Gregory Stephanopoulos posted to synthetic_biology review metabolic_networks metabolic_engineering biofuels by Vincent_Rouilly on 2009-09-22 10:22:43 as along with 2 people zwang dbikard
	Systems biology meets synthetic biology: a case study of the metabolic effects of synthetic rewiring [My Copy] Mol. BioSyst., Vol. 5, No. 10. (2009), pp. 1214-1223. by Josselin Noirel, Saw Y. Ow, Guido Sanguinetti, Phillip C. Wright posted to systems_biology synthetic_biology omics metabolic_networks bioinformatics by Vincent_Rouilly on 2009-09-22 10:17:30 as along with 2 people zwang abhishek_tiwari
	Next-generation DNA sequencing [My Copy] Nature Biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted to sequencing sequence omics method dna by Vincent_Rouilly on 2009-09-16 18:10:12 as along with 41 people and 3 groups giovenko heliopais seb1 installe niallhaslam rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm farhat idoerg mhz mmartin antonkratz jbhiatt yupu behindtherabbit guhjy Pascalichouchou frohike dakelley ptrobajo zwang Zephyrus psique natstreet druvus nuin alexknight reyez dbk wsjames pengchy GeeSharpMinor Bioinformatics Roswell Cancer Crosstalk Oxford Virology
	Next-Generation DNA Sequencing Methods [My Copy] Annual Review of Genomics and Human Genetics, Vol. 9, No. 1. (19 June 2008), pp. 387-402. by Elaine R. Mardis posted to sequencing sequence omics method dna by Vincent_Rouilly on 2009-09-16 18:08:29 as along with 14 people heliopais daforerog stsaft natstreet n00c druvus Annab floatingpoint yupu LorraineThompson giovenko aheilbut reyez guhjy
	Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond. [My Copy] Current opinion in plant biology, Vol. 12, No. 2. (20 April 2009), pp. 107-118. by Ryan Lister, Brian D. Gregory, Joseph R. Ecker posted to transcriptome sequencing review omics genome by Vincent_Rouilly on 2009-09-16 12:16:33 as along with 4 people mlog debasis guhjy smiddha
	Halting a cellular production line: responses to ribosomal pausing during translation. [My Copy] Biology of the cell / under the auspices of the European Cell Biology Organization, Vol. 99, No. 9. (September 2007), pp. 475-487. by J. Ross Buchan, Ian Stansfield posted to translation pausing gene_expression delayed by Vincent_Rouilly on 2009-09-15 18:17:24 as along with 2 people margaritis saunders
	Generic algorithm to predict the speed of translational elongation: implications for protein biogenesis. [My Copy] PloS one, Vol. 4, No. 4. (2009) by Gong Zhang, Zoya Ignatova posted to trna protein_expression codon_optimisation bioinformatics analysis by Vincent_Rouilly on 2009-09-15 17:48:28 as along with 1 person saunders
	Design Parameters to Control Synthetic Gene Expression in Escherichia coli [My Copy] PLoS ONE, Vol. 4, No. 9. (14 September 2009), e7002. by Mark Welch, Sridhar Govindarajan, Jon E. Ness, et al.Alan Villalobos, Austin Gurney, Jeremy Minshull, Claes Gustafsson posted to gene_synthesis gene_expression ecoli dna codon_optimisation by Vincent_Rouilly on 2009-09-15 14:50:04 as along with 6 people and 1 group dbikard RasmusJensen pala0088 jjray michaelbarton bmduggan Synthetic Biology
	An optimized yeast cell-free system: Sufficient for translation of human papillomavirus 58 L1 mRNA and assembly of virus-like particles [My Copy] Journal of Bioscience and Bioengineering, Vol. 106, No. 1. (July 2008), pp. 8-15. by Xiao Wang, Juan Liu, Yan Zheng, et al.Jing Li, Hong Wang, Yabin Zhou, Mei Qi, Han Yu, Wei Tang, Wei M. Zhao posted to yeast protein_expression in_vitro cell_free cell_extract by Vincent_Rouilly on 2009-09-15 09:49:06 as
	A review on microbial synthesis of hydrocarbons [My Copy] Process Biochemistry, Vol. 41, No. 5. (May 2006), pp. 1001-1014. by N. Ladygina, E. Dedyukhina, M. Vainshtein posted to metabolic_engineering biofuels by Vincent_Rouilly on 2009-09-14 17:02:09 as
	New microbial fuels: a biotech perspective. [My Copy] Current opinion in microbiology, Vol. 12, No. 3. (June 2009), pp. 274-281. by Mathew A. Rude, Andreas Schirmer posted to synthetic_biology review metabolic_engineering biofuels by Vincent_Rouilly on 2009-09-14 16:58:57 as
	Update of KDBI: Kinetic Data of Bio-molecular Interaction database [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D636-641. by Pankaj Kumar, B. C. Han, Z. Shi, et al.J. Jia, Y. P. Wang, Y. T. Zhang, L. Liang, Q. F. Liu, Z. L. Ji, Y. Z. Chen posted to metabolic_engineering kinetic database by Vincent_Rouilly on 2009-09-13 19:09:17 as along with 3 people lptolik guhjy higueruelo
	KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 11. (1 June 2009), pp. 1470-1471. by Jitao David D. Zhang, Stefan Wiemann posted to r pathway metabolic_networks metabolic_engineering kegg bioconductor analysis by Vincent_Rouilly on 2009-09-13 19:06:06 as along with 15 people Thaverkamp daforerog kiara coela guhjy dolchan neils VGreiff nuin chrisamiller renatomilani jmeppley natstreet phoenixzxl druvus
	Two approaches for metabolic pathway analysis? [My Copy] Trends in Biotechnology, Vol. 21, No. 2. (February 2003), pp. 64-69. by S. Klamt posted to review pathway metabolic_engineering analysis by Vincent_Rouilly on 2009-09-13 19:03:13 as along with 1 person fishtank
	Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber [My Copy] Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 1219-1226. by Ina Koch, Bjorn H. Junker, Monika Heiner posted to validation simulation petri_nets metabolic_networks metabolic_engineering by Vincent_Rouilly on 2009-09-13 15:05:55 as along with 1 person laurabertens
	Model Validation of Biological Pathways Using Petri Nets - Demonstrated for Apoptosis [My Copy] Computational Methods in Systems Biology (2003), pp. 173-173. by Monika Heiner, Ina Koch, Jürgen Will posted to validation simulation petri_nets model metabolic_engineering by Vincent_Rouilly on 2009-09-13 15:00:59 as
	A Quick Guide to Teaching R Programming to Computational Biology Students [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000482. by Stephen J. Eglen posted to tutorial r computational_biology by Vincent_Rouilly on 2009-09-02 23:05:48 as along with 61 people and 4 groups kaliczp maren sobolevnrm ltitodem zchen75 artaban421 natstreet jasonn tomhebbron psique Stew eshirdel guhjy polivares ajw fishtank diamantis fastjoe23 kshameer daveGerrard hrogers JoeBanks cisevol srijit hwright Ayest VGreiff welliegirl asadrahman rdiaz ptrobajo heliopais coffeerv marekrud tnhh barry ansobol Zephyrus walshtp bertelsen fgibson pkonings Borelli klauso dlizcano dswan skembel djkt jclau lwaldron phoenixzxl timhubbard AJCann thegoose dullhunk brianb neils silberbauer daforerog ppgardne druvus Bioinformatics - CRUK BergmanLab eLearning in Leicester Journal picks
	Nature, nurture, or chance: stochastic gene expression and its consequences. [My Copy] Cell, Vol. 135, No. 2. (17 October 2008), pp. 216-226. by Arjun Raj, Alexander van Oudenaarden posted to synthetic_biology stochastic noise gene_expression by Vincent_Rouilly on 2009-09-01 10:46:40 as along with 12 people and 1 group ddcttrl pkm iml burnettjc jbhiatt GustavoLacerda samgj erel10 Zephyrus ocs sg45653 jjray Roswell Cancer Crosstalk
	Finding sequence motifs in prokaryotic genomes--a brief practical guide for a microbiologist [My Copy] Brief Bioinform, Vol. 10, No. 5. (24 June 2009), pp. bbp032-536. by Jan Mrazek posted to sequence dna_sequence bioinformatics bacteria analysis by Vincent_Rouilly on 2009-09-01 10:25:32 as along with 4 people reyez nyyu druvus nuin
	Controlling Messenger RNA Stability in Bacteria: Strategies for Engineering Gene Expression [My Copy] Biotechnology Progress, Vol. 13, No. 6. (c 1997), pp. 699-708. by Trent A. Carrier, J. D. Keasling posted to synthetic_biology stability mrna gene_expression bacteria by Vincent_Rouilly on 2009-09-01 10:17:41 as along with 1 person austin
	Engineering multigene expression <I>in vitro</I> and <I>in vivo</I> with small terminators for T7 RNA polymerase [My Copy] Biotechnology and Bioengineering, Vol. 9999, No. 999A. (2009), n/a. by Liping Du, Rong Gao, Anthony C. Forster posted to terminator t7 synthetic_biology in_vitro gene_expression cell_free by Vincent_Rouilly on 2009-09-01 10:16:51 as
	mRNA-Seq whole-transcriptome analysis of a single cell [My Copy] Nature Methods, Vol. 6, No. 5. (06 April 2009), pp. 377-382. by Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, et al.Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B. Tuch, Asim Siddiqui, Kaiqin Lao, M. Azim Surani posted to transcriptome single_cell_analysis sequencing mrna dna by Vincent_Rouilly on 2009-08-21 15:22:32 as along with 14 people inesdesantiago heliopais manduca debasis mtagaya woodson8 gdb guhjy kintoki fenghezi absterga jbhiatt pengchy sleepingcell
	Chemical Science & Technology Laboratory Homepage [My Copy] posted to standard_reporting by Vincent_Rouilly on 2009-08-13 12:02:49 as
	ASTM International - Standards Worldwide [My Copy] NA by Na edited by Na posted to standards standard_reporting organisation by Vincent_Rouilly on 2009-08-13 11:50:19 as
	Proposed minimum reporting standards for chemical analysis [My Copy] Metabolomics, Vol. 3, No. 3. (1 September 2007), pp. 211-221. by Lloyd Sumner, Alexander Amberg, Dave Barrett, et al.Michael Beale, Richard Beger, Clare Daykin, Teresa Fan, Oliver Fiehn, Royston Goodacre, Julian Griffin, Thomas Hankemeier, Nigel Hardy, James Harnly, Richard Higashi, Joachim Kopka, Andrew Lane, John Lindon, Philip Marriott, Andrew Nicholls, Michael Reily, John Thaden, Mark Viant posted to standards standard_reporting metabolomics functional_genomics by Vincent_Rouilly on 2009-08-13 11:40:02 as
	Towards agreement on best practice for publishing raw clinical trial data [My Copy] Trials, Vol. 10, No. 1. (2009), 17. by Iain Hrynaszkiewicz, Douglas Altman posted to trial standards standard_reporting raw_data clinical by Vincent_Rouilly on 2009-08-13 11:36:30 as along with 2 people guhjy kharke
	Refinement and standardization of synthetic biological parts and devices [My Copy] Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 787-793. by Barry Canton, Anna Labno, Drew Endy posted to synthetic_biology standard_reporting promoter characterisation by Vincent_Rouilly on 2009-08-11 17:30:32 as along with 6 people dbikard gvillar guhjy marck austin grahamc
	In situ monitoring of polymerase extension rate and adaptive feedback control of PCR by using fluorescence measurements [My Copy] Journal of Biochemical and Biophysical Methods, Vol. 65, No. 2-3. (31 December 2005), pp. 97-105. by S. Mondal, V. Venkataraman posted to dna extension fluorescence pcr polymerase rt-pcr by Vincent_Rouilly on 2009-08-02 19:45:08 as

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review	37
transcription	33
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rna	23
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pcr	8
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ph	2
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ethics	1
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genomedesign	1
gillespie	1
hairpin	1
independent	1
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industrial_strains	1
inhibition	1
integrons	1
in-vivo	1
isothermal-dna-amplification	1
kegg	1
ligand	1
logic_gates	1
mammalian_cell	1
mcherry	1
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metabolite	1
metabolomics	1
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othogonality	1
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pluxr	1
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reaction_diffusion	1
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selfreplication	1
semantic	1
sensing	1
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society	1
softwares	1
stability	1
structure	1
switch	1
t7_promoter	1
technology	1
telomere	1
temperature	1
tentacle_probe	1
thesis_chapter_3	1
thesis_chapter_6	1
thesis_chapter_7	1
trial	1
trna	1
tutorial	1
uploaded	1
ytva	1

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