Vincent_Rouilly's molecular_beacon [58 articles] Export

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	In silico comparison of real-time PCR probes for detection of pathogens. [My Copy] In silico biology, Vol. 8, No. 3-4. (2008), pp. 251-259. by Siya Ram, Ram Lakhan L. Singh, Rishi Shanker posted to molecular_beacon fret detection by Vincent_Rouilly on 2009-11-19 18:06:50 as
	A novel universal real-time PCR system using the attached universal duplex probes for quantitative analysis of nucleic acids [My Copy] BMC Molecular Biology, Vol. 9, No. 1. (04 June 2008), 54. by Litao Yang, Wanqi Liang, Lingxi Jiang, et al.Wenquan Li, Wei Cao, Zoe Wilson, Dabing Zhang posted to rt-pcr protocol mrna molecular_beacon by Vincent_Rouilly on 2009-11-12 14:34:37 as along with 2 people fpattyn guhjy
	Real-time measurement of in vitro transcription. [My Copy] Nucleic Acids Res, Vol. 32, No. 9. (2004) by S. A. Marras, B. Gold, F. R. Kramer, I. Smith, S. Tyagi posted to in-vitro measurement molecular_beacon transcription by Vincent_Rouilly on 2009-06-08 12:00:22 as along with 1 person madhadron
	Fluorescent probes for live-cell RNA detection. [My Copy] Annual review of biomedical engineering, Vol. 11, No. 1. (2009), pp. 25-47. by G. Bao, W. J. Rhee, A. Tsourkas posted to in_vivo molecular_beacon nucleic_acid_probe rna by Vincent_Rouilly on 2009-06-02 15:59:08 as along with 1 person guhjy
	A double-stranded molecular probe for homogeneous nucleic acid analysis [My Copy] Analyst, Vol. 133, No. 8. (2008), pp. 1013-1019. by Daniel Meserve, Zhaohui Wang, Donna D. Zhang, Pak K. Wong posted to broken_beacon dna molecular_beacon nucleic_acid_probe rna by Vincent_Rouilly on 2009-06-02 15:02:04 as
	Design of 240,000 orthogonal 25mer DNA barcode probes [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 7. (17 February 2009), pp. 2289-2294. by Qikai Xu, Michael R. Schlabach, Gregory J. Hannon, Stephen J. Elledge posted to molecular_beacon nucleic_acid nucleic_acid_probe oligodesign by Vincent_Rouilly on 2009-05-19 14:58:44 as along with 3 people antariksh guhjy jbhiatt
	RTPrimerDB: the portal for real-time PCR primers and probes. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (23 January 2009), gkn777. by Steve Lefever, Jo Vandesompele, Frank Speleman, Filip Pattyn posted to database molecular_beacon oligo_design probedesign rt-pcr by Vincent_Rouilly on 2009-04-22 14:37:18 as along with 2 people daforerog guhjy
	QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 465. by Samuel Arvidsson, Miroslaw Kwasniewski, Diego R. Pachon, Bernd M. Roeber posted to bioinformatics molecular_beacon oligodesign probedesign qpcr rt-pcr by Vincent_Rouilly on 2009-04-21 12:51:41 as along with 6 people daforerog stsaft guhjy natstreet druvus GeeSharpMinor
	DNA folding and melting observed in real time redefine the energy landscape. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 3. (16 January 2007), pp. 712-716. by H. Ma, C. Wan, A. Wu, A. H. Zewail posted to dna molecular_beacon nucleic_acid_probe rna by Vincent_Rouilly on 2009-03-09 12:06:26 as
	The Pathway of Oligomeric DNA Melting Investigated by Molecular Dynamics Simulations☆ [My Copy] Biophysical Journal, Vol. 95, No. 12. (15 December 2008), pp. 5618-5626. by Ka-Yiu Wong, Montgomery B. Pettitt posted to design dna molecular_beacon nucleic_acid_probe rna by Vincent_Rouilly on 2009-03-09 12:05:15 as along with 1 person and 1 group A_Coletta_Thesis Structural Biology Group TorVergata
	IDT SciTools: a suite for analysis and design of nucleic acid oligomers. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by R. Owczarzy, A. V. Tataurov, Y. Wu, et al.J. A. Manthey, K. A. McQuisten, H. G. Almabrazi, K. F. Pedersen, Y. Lin, J. Garretson, N. O. McEntaggart, C. A. Sailor, R. B. Dawson, A. S. Peek posted to broken_beacon melting_temperature molecular_beacon oligo_design by Vincent_Rouilly on 2009-02-18 10:07:07 as along with 1 person guhjy
	Melting temperatures of nucleic acids: Discrepancies in analysis [My Copy] Biophysical Chemistry, Vol. 117, No. 3. (03 October 2005), pp. 207-215. by R. Owczarzy posted to broken_beacon melting_temperature molecular_beacon oligo_design by Vincent_Rouilly on 2009-02-18 10:05:25 as
	ProbeMaker: an extensible framework for design of sets of oligonucleotide probes [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Johan Stenberg, Mats Nilsson, Ulf Landegren posted to broken_beacon molecular_beacon nucleic_acid_probe oligo_design by Vincent_Rouilly on 2009-02-17 11:26:38 as along with 2 people guhjy wook
	Predicting sequence-dependent melting stability of short duplex DNA oligomers [My Copy] Biopolymers, Vol. 44, No. 3. (1997), pp. 217-239. by Richard Owczarzy, Peter M. Vallone, Frank J. Gallo, Teodoro M. Paner, Michael J. Lane, Albert S. Benight posted to broken_beacon molecular_beacon nucleic_acid_probe oligo_design oligos by Vincent_Rouilly on 2009-02-17 11:22:33 as along with 1 person Hosna
	Methods developed for SELEX [My Copy] Analytical and Bioanalytical Chemistry, Vol. 387, No. 1. (January 2007), pp. 171-182. by Gopinath, Subash posted to aptamer evolution molecular_beacon selex by Vincent_Rouilly on 2009-02-09 10:26:20 as along with 1 person jec105
	Prospects of Ligand-Induced Aptamers [My Copy] Critical Reviews in Analytical Chemistry, Vol. 38, No. 1. (2008), pp. 34-47. by Subash C. Gopinath, Tomoko S. Misono, Penmetcha K. Kumar posted to aptamer ligand molecular_beacon nucleic_acid_probe by Vincent_Rouilly on 2009-02-09 10:18:29 as
	Statistical Thermodynamics and Kinetics of DNA Multiplex Hybridization Reactions [My Copy] Biophysical Journal, Vol. 91, No. 11. (2006), pp. 4133-4153. by M. T. Horne, D. J. Fishand, A. S. Benight posted to broken_beacon displacement hybridization modelling molecular_beacon by Vincent_Rouilly on 2009-02-07 16:57:20 as
	Kinetics of Multiplex Hybridization: Mechanisms and Implications [My Copy] Biophysical journal, Vol. 94, No. 5. (2008), pp. 1726-1734. by J. Bishop, A. M. Chagovetz, S. Blair posted to broken_beacon displacement hybridization modelling molecular_beacon by Vincent_Rouilly on 2009-02-07 16:45:03 as
	Competitive Displacement of DNA during Surface Hybridization [My Copy] Biophys. J., Vol. 92, No. 1. (1 January 2007), pp. L10-12. by J. Bishop, C. Wilson, A. M. Chagovetz, S. Blair posted to broken_beacon displacement hybridization modelling molecular_beacon by Vincent_Rouilly on 2009-02-07 16:40:39 as
	Selection of Fluorophore and Quencher Pairs for Fluorescent Nucleic Acid Hybridization Probes [My Copy] Fluorescent Energy Transfer Nucleic Acid Probes, Vol. 335 (2006), pp. 3-16. by Salvatore A. E. Marras posted to fluorophore molecular_beacon quencher by Vincent_Rouilly on 2009-02-07 16:17:16 as along with 1 person mihalus
	A nanogold-quenched fluorescence duplex probe for homogeneous DNA detection based on strand displacement [My Copy] Analytical and Bioanalytical Chemistry, Vol. 389, No. 2. (September 2007), pp. 493-497. by Mo, -H, Yang, et al. -C, Guo, -P, Wen, -Y posted to broken_beacon molecular_beacon nanogold by Vincent_Rouilly on 2009-02-07 16:04:10 as
	Molecular beacons: an optimal multifunctional biological probe. [My Copy] Biochemical and biophysical research communications, Vol. 373, No. 4. (5 September 2008), pp. 457-461. by Y. Li, X. Zhou, D. Ye posted to molecular_beacon review by Vincent_Rouilly on 2009-02-05 16:38:14 as along with 1 person guhjy
	Thermodynamically modulated partially double-stranded linear DNA probe design for homogeneous real-time PCR. [My Copy] Nucleic acids research, Vol. 35, No. 16. (2007) by S. Huang, J. Salituro, N. Tang, et al.K. C. Luk, J. Hackett, P. Swanson, G. Cloherty, W. B. Mak, J. Robinson, K. Abravaya posted to broken_beacon molecular_beacon oligos by Vincent_Rouilly on 2009-01-25 18:29:20 as
	Partially double-stranded linear DNA probes: Novel design for sensitive detection of genetically polymorphic targets [My Copy] Journal of Virological Methods, Vol. 144, No. 1-2. (September 2007), pp. 1-11. by K. Luk, S. Devare, J. Hackettjr posted to broken_beacon design displacement molecular_beacon oligo by Vincent_Rouilly on 2009-01-25 18:24:33 as
	A new class of homogeneous nucleic acid probes based on specific displacement hybridization. [My Copy] Nucleic acids research, Vol. 30, No. 2. (15 January 2002) by Q. Li, G. Luan, Q. Guo, J. Liang posted to broken_beacon design displacement molecular_beacon oligo by Vincent_Rouilly on 2009-01-25 18:16:12 as
	Reversible molecular switching of molecular beacon: controlling DNA hybridization kinetics and thermodynamics using mercury(ii) ions [My Copy] Chem. Commun., No. 3. (2009), pp. 322-324. by Ronghua Yang, Jianyu Jin, Liping Long, Yongxiang Wang, Hao Wang, Weihong Tan posted to molecular_beacon by Vincent_Rouilly on 2009-01-25 17:34:55 as
	A protocol for the in vitro selection of specific oligonucleotide probes for high-resolution DNA typing [My Copy] Nat. Protocols, Vol. 2, No. 11. (November 2007), pp. 2807-2814. by Ivan Brukner, Maja Krajinovic, Andre Dascal, Damian Labuda posted to design in_vitro molecular_beacon oligo protocol selection by Vincent_Rouilly on 2009-01-25 16:16:40 as
	DFold: PCR design that minimizes secondary structure and optimizes downstream genotyping applications [My Copy] Human Mutation, Vol. 24, No. 1. (2004), pp. 1-8. by David Fredman, M. Jobs, L. Strömqvist, A. J. Brookes posted to design molecular_beacon oligo secondary-structure by Vincent_Rouilly on 2009-01-24 19:01:48 as along with 1 person cthachuk
	Design of a novel molecular beacon: modification of the stem with artificially genetic alphabet [My Copy] Chem. Commun., No. 41. (2008), pp. 5128-5130. by Pinpin Sheng, Zunyi Yang, Youngmi Kim, Yanrong Wu, Weihong Tan, Steven A. Benner posted to design molecular_beacon by Vincent_Rouilly on 2009-01-24 18:56:32 as
	Design of a novel G-quenched molecular beacon: A simple and efficient strategy for DNA sequence analysis [My Copy] Chem. Commun., No. 43. (2007), pp. 4492-4494. by Yoshio Saito, Erika Mizuno, Subhendu S. Bag, Isamu Suzuka, Isao Saito posted to molecular_beacon self-quenched by Vincent_Rouilly on 2009-01-24 18:49:11 as
	Real-time monitoring of in vitro transcriptional RNA synthesis using fluorescence resonance energy transfer [My Copy] Nucl. Acids Res., Vol. 28, No. 12. (15 June 2000), e59. by Yukari Sei-Iida, Hiroyuki Koshimoto, Satoshi Kondo, Akihiko Tsuji posted to fret in_vitro molecular_beacon rna by Vincent_Rouilly on 2009-01-23 12:53:04 as
	DNA probes using fluorescence resonance energy transfer (FRET): designs and applications. [My Copy] BioTechniques, Vol. 31, No. 5. (November 2001) by V. V. Didenko posted to dna dna_probes molecular_beacon review rna by Vincent_Rouilly on 2009-01-23 12:20:51 as along with 1 person nahnah
	Linear 2' O-Methyl RNA probes for the visualization of RNA in living cells [My Copy] Nucl. Acids Res., Vol. 29, No. 17. (1 September 2001), e89. by C. Molenaar, S. A. Marras, J. C. M. Slats, et al.J. C. Truffert, M. Lemaitre, A. K. Raap, R. W. Dirks, H. J. Tanke posted to in_vivo molecular_beacon by Vincent_Rouilly on 2009-01-23 12:17:06 as
	Oligonucleotide probes for RNA-targeted fluorescence in situ hybridization. [My Copy] Advances in clinical chemistry, Vol. 43 (2007), pp. 79-115. by A. P. Silverman, E. T. Kool posted to in_vivo molecular_beacon by Vincent_Rouilly on 2009-01-23 11:52:49 as
	Hybridization of 2'-O-methyl and 2'-deoxy molecular beacons to RNA and DNA targets [My Copy] Nucl. Acids Res., Vol. 30, No. 23. (1 December 2002), pp. 5168-5174. by Andrew Tsourkas, Mark A. Behlke, Gang Bao posted to dna molecular_beacon rna by Vincent_Rouilly on 2009-01-23 11:43:05 as
	Design and characterization of two-dye and three-dye binary fluorescent probes for mRNA detection [My Copy] Tetrahedron In Fluorescent Nucleoside Analogs: Synthesis, Properties and Applications, Vol. 63, No. 17. (23 April 2007), pp. 3591-3600. by Angel A. Marti, Xiaoxu Li, Steffen Jockusch, et al.Nathan Stevens, Zengmin Li, Bindu Raveendra, Sergey Kalachikov, Irina Morozova, James J. Russo, Daniel L. Akins, Jingyue Ju, Nicholas J. Turro posted to binary_probe characterisation molecular_beacon by Vincent_Rouilly on 2009-01-23 11:27:09 as along with 1 person dna
	Novel DNA probes with low background and high hybridization-triggered fluorescence. [My Copy] Nucleic acids research, Vol. 35, No. 5. (2007) by E. A. Lukhtanov, S. G. Lokhov, V. V. Gorn, M. A. Podyminogin, W. Mahoney posted to characterisation molecular_beacon by Vincent_Rouilly on 2009-01-23 10:55:52 as
	Advantages of 2'-O-methyl oligoribonucleotide probes for detecting RNA targets. [My Copy] Nucleic acids research, Vol. 26, No. 9. (1 May 1998), pp. 2224-2229. by M. Majlessi, N. C. Nelson, M. M. Becker posted to design modification molecular_beacon by Vincent_Rouilly on 2009-01-22 16:01:46 as
	Hybridization of 2'-O-methyl and 2'-deoxy molecular beacons to RNA and DNA targets. [My Copy] Nucleic acids research, Vol. 31, No. 6. (15 March 2003), pp. 5168-5174. by A. Tsourkas, M. A. Behlke, G. Bao posted to design dna molecular_beacon rna by Vincent_Rouilly on 2009-01-22 16:00:04 as
	Stem-loop oligonucleotides: a robust tool for molecular biology and biotechnology [My Copy] Trends in Biotechnology, Vol. 20, No. 6. (1 June 2002), pp. 249-256. by N. Broude posted to molecular_beacon by Vincent_Rouilly on 2009-01-22 09:45:13 as
	Synthesis of hairpin probe using deoxyguanosine as a quencher: Fluorescence and hybridization studies [My Copy] Analytical Biochemistry, Vol. 364, No. 1. (01 May 2007), pp. 86-88. by A. Misra, P. Kumar, K. Gupta posted to molecular_beacon self-quenched by Vincent_Rouilly on 2009-01-22 09:21:15 as
	Aptamer biosensor for protein detection based on guanine-quenching [My Copy] Sensors and Actuators B: Chemical, Vol. 129, No. 1. (29 January 2008), pp. 211-217. by W. Wang, C. Chen, M. Qian, X. Zhao posted to aptamer molecular_beacon self-quenched by Vincent_Rouilly on 2009-01-22 09:05:02 as
	Effects of fluorescent dyes, quenchers, and dangling ends on DNA duplex stability [My Copy] Biochemical and Biophysical Research Communications, Vol. 327, No. 2. (11 February 2005), pp. 473-484. by B. Moreira, Y. You, M. Behlke, R. Owczarzy posted to melting_temperature molecular_beacon quencher_free by Vincent_Rouilly on 2009-01-14 10:04:10 as
	Photoinduced Electron Transfer between Fluorescent Dyes and Guanosine Residues in DNA-Hairpins [My Copy] The Journal of Physical Chemistry B, Vol. 107, No. 31. (2003), pp. 7957-7964. by Thomas Heinlein, Jens-Peter Knemeyer, Oliver Piestert, Markus Sauer posted to molecular_beacon quencher_free by Vincent_Rouilly on 2009-01-14 09:46:56 as
	Photoinduced charge separation in pyrenedicarboxamide-linked DNA hairpins [My Copy] Photochem. Photobiol. Sci., Vol. 7, No. 12. (2008), pp. 1501-1508. by Pierre Daublain, Karsten Siegmund, Mahesh Hariharan, et al.Josh Vura-Weis, Michael R. Wasielewski, Frederick D. Lewis, Vladimir Shafirovich, Qiang Wang, Milen Raytchev, Torsten Fiebig posted to molecular_beacon quencher_free by Vincent_Rouilly on 2009-01-13 19:49:58 as
	Design of an efficient self-quenched molecular beacon for SNPs genotyping [My Copy] NUCLEIC ACIDS SYMP SER (OXF), Vol. 52, No. 1. (1 September 2008), pp. 359-360. by Yoshio Saito, Kyoko Numajiri, Subhendu S. Bag, Erika Mizuno, Isao Saito posted to design molecular_beacon quencher_free by Vincent_Rouilly on 2009-01-13 18:25:06 as
	Quencher-free molecular beacons: a new strategy in fluorescence based nucleic acid analysis [My Copy] Chem. Soc. Rev., Vol. 37, No. 4. (2008), pp. 648-663. by Natarajan Venkatesan, Young J. Seo, Byeang H. Kim posted to design molecular_beacon quencher_free by Vincent_Rouilly on 2009-01-13 17:50:34 as along with 1 person guhjy
	Hybridization kinetics and thermodynamics of molecular beacons. [My Copy] Nucleic acids research, Vol. 31, No. 4. (15 February 2003), pp. 1319-1330. by A. Tsourkas, M. A. Behlke, S. D. Rose, G. Bao posted to modelling molecular_beacon thermodynamics by Vincent_Rouilly on 2009-01-13 15:09:21 as
	Quenched probes for highly specific detection of cellular RNAs [My Copy] Trends in Biotechnology, Vol. 23, No. 5. (May 2005), pp. 225-230. by A. Silverman, E. Kool posted to molecular_beacon mrna by Vincent_Rouilly on 2009-01-12 14:46:56 as
	Imaging mRNA movement from transcription sites to translation sites [My Copy] Seminars in Cell & Developmental Biology, Vol. 18, No. 2. (April 2007), pp. 202-208. by A. Rodriguez, J. Condeelis, R. Singer, J. Dictenberg posted to in_vivo molecular_beacon mrna by Vincent_Rouilly on 2009-01-12 14:40:51 as

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bibtex-import	77
molecular_beacon	58
dna	45
review	45
transcription	35
characterisation	29
synthetic_biology	29
modelling	26
biology	24
measurement	23
rna	23
synthetic	21
promoter	20
light-inducible-transcription	19
protocol	18
design	17
software	15
homology_recombination	14
metabolic_engineering	14
aptamer	13
thesis_chapter_1	13
nucleic_acid	13
broken_beacon	13
standards	13
gene_expression	12
fluorescence	12
in_vivo	12
terminator	12
initiation	11
mrna	11
fret	11
application	11
stochastic	11
ecoli	11
t7	11
bioinformatics	10
biofuels	10
standard_reporting	10
in_vitro	10
network	9
aptamers	9
fluorometer	9
analysis	9
dna_assembly	9
dna_breathing	9
transcription_factors	8
nucleic_acid_probe	8
rt-pcr	8
pcr	8
sequence	8
gfp	7
genetic	7
yeast	7
in-vitro	7
genome_engineering	7
applications	7
rnap	7
database	7
azobenzene	7
lamda_red	7
escape	6
selex	6
syntheticbiology	6
sequencing	6
displacement	6
bacteria	6
bioanalitycal_chemistry	6
annotation	6
qpcr	5
led	5
oligo	5
systems_biology	5
t7_rnap	5
hybridization	5
dye	5
quencher_free	5
bioanalytical_chemistry	5
cellprofiler	5
metabolic_networks	5
simulation	5
abortive	5
omics	5
oligo_design	5
dna_design	5
detection	4
recombination	4
protein_engineering	4
das	4
gene	4
automation	4
assembly	4
sbml	4
melting_temperature	4
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chip-sequence	4
ribozyme	4
riboswitch	4
r	4
microfluidics	4
expression	4
ontology	4
tools	3
cell	3
pathway	3
control	3
ligation_independent_cloning	3
riboswitches	3
dna_probes	3
dnaassembly	3
programming	3
oligos	3
translation	3
elongation	3
cellulases	3
agile	3
codon_optimisation	3
opensource	3
helicase	3
biobrick	3
sequence_design	3
method	3
minimuminformation	3
self-quenched	3
t7_rna_polymerase	3
oligodesign	3
dnasynthesis	3
image_processing	3
transcriptome	3
protocols	2
linear_dna	2
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single_cell_analysis	2
thesis_chapter_2	2
thermodynamics	2
gene_synthesis	2
in-vivo	2
bsubtilis	2
isothermal	2
genome	2
equipment	2
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labprotocol	2
real_time	2
cellml	2
owl	2
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image	2
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probedesign	2
electrochemical	2
dna_synthesis	2
measurements	2
protein_expression	2
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genetic_network	2
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optical	2
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replication	2
homologyrecombination	2
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synthesis	2
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signaling	2
microscopy	2
calibration	2
cell-cell	2
mulitplex	2
ph	2
diy	2
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oscillator	2
plasmid	2
quantum_dots	2
chip-seq	2
ensembl	1
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bioan	1
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chemotaxis	1
microbes	1
flim	1
conflict	1
tutorial	1
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bioconductor	1
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kegg	1
python	1
polymerase	1
modification	1
recombineering	1
biosensor	1
trna	1
microbial_ecology	1
stability	1
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dna_sequence	1
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folding	1
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secondary-structure	1
fluorophore	1
technology	1
switch	1
thesis_chapter_7	1
peltier	1
rt-qpcr	1
clinical	1
chip	1
genomedesign	1
softwares	1
uploaded	1
and	1
mammalian_cell	1
gillespie	1
absorbance	1
telomere	1
metabolomics	1
computational_biology	1
pausing	1
microcontroller	1
mibbi	1
society	1
facs	1
independent	1
yeast_saccharomyces_cerevisiae	1
clearance	1
quantitative	1
enzymes	1
bacterial	1
biofuel	1
minimal_plasmid	1
protein	1
beacon	1
binary_probe	1
aptazyme	1
semantic	1
genenetworks	1
storage	1
molecular	1
free_energy	1
bayesian	1
othogonality	1
ligand	1
temperature	1
model	1
gene_fabrication	1
device	1
in_silico	1
raw_data	1
cellulose	1
isothermal-dna-amplification	1
next_generation	1
hcs	1
quantification	1
pluxr	1
t7_promoters	1
industrial_applications	1
cell_extract	1
integrons	1
functional_genomics	1
t7_promoter	1
inhibition	1
hairpin	1
sensitivity	1
selection_method	1
metagenomics	1
logic_gates	1
ytva	1
metabolite	1
quencher	1
miqe	1
extension	1
thesis_chapter_3	1
memory	1
industrial_strains	1
next_generation_sequencing	1
biotechnology	1
electro-genetic	1
dna_stacking	1
tentacle_probe	1
nanogold	1
sensing	1
structure	1
part	1
reaction_diffusion	1
screening	1
trial	1
ethics	1
selfreplication	1
experiments	1

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