absterga's dna_protein_interactions [38 articles] Export

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	Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 14. (15 July 2006) by Barrett C. Foat, Alexandre V. Morozov, Harmen J. Bussemaker posted to dna_protein_interactions mathamatical_modeling by absterga on 2009-08-05 22:52:09 as along with 5 people mox lusk yevishere dquest xili03
	The mathematics of SELEX against complex targets1 [My Copy] Journal of Molecular Biology, Vol. 278, No. 3. (08 May 1998), pp. 579-597. by Barry Vant-Hull, Antonio Payano-Baez, Robert H. Davis, Larry Gold posted to dna_protein_interactions mathamatical_modeling read selex by absterga on 2009-08-05 04:25:50 as
	SELEXION. Systematic evolution of ligands by exponential enrichment with integrated optimization by non-linear analysis. [My Copy] Journal of molecular biology, Vol. 222, No. 3. (5 December 1991), pp. 739-761. by D. Irvine, C. Tuerk, L. Gold posted to dna_protein_interactions mathamatical_modeling read selex by absterga on 2009-08-05 04:23:17 as along with 1 person malcook
	Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences [My Copy] Cell, Vol. 133, No. 7. (27 June 2008), pp. 1266-1276. by Michael F. Berger, Gwenael Badis, Andrew R. Gehrke, et al.Shaheynoor Talukder, Anthony A. Philippakis, Lourdes Peña-Castillo, Trevis M. Alleyne, Sanie Mnaimneh, Olga B. Botvinnik, Esther T. Chan, Faiqua Khalid, Wen Zhang, Daniel Newburger, Savina A. Jaeger, Quaid D. Morris, Martha L. Bulyk, Timothy R. Hughes posted to dna_protein_interactions by absterga on 2009-07-17 04:15:02 as
	Predicting the binding preference of transcription factors to individual DNA k-mers [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 1012-1018. by Trevis M. Alleyne, Lourdes Pena-Castillo, Gwenael Badis, et al.Shaheynoor Talukder, Michael F. Berger, Andrew R. Gehrke, Anthony A. Philippakis, Martha L. Bulyk, Quaid D. Morris, Timothy R. Hughes posted to dna_protein_interactions mathamatical_modeling by absterga on 2009-07-17 04:13:01 as along with 6 people and 1 group TRHvidsten bais djkt lptolik nuin maximilianh BenosLab
	DNA Binding Specificity of the CCAAT/Enhancer-binding Protein Transcription Factor Family [My Copy] J. Biol. Chem., Vol. 271, No. 7. (16 February 1996), pp. 3891-3896. by Shigehiro Osada, Hiroko Yamamoto, Tsutomu Nishihara, Masayoshi Imagawa posted to dna_protein_interactions by absterga on 2009-07-15 23:22:50 as
	A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors [My Copy] Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237. by Sebastian J. Maerkl, Stephen R. Quake posted to dna_protein_interactions by absterga on 2009-07-15 23:18:04 as along with 9 people and 2 groups jjray dpollard emilyhare adepace aswin skoch3 blobbybirdman emptyhb brant EisenLab Koch_Lab
	Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity [My Copy] Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59. by O. Hallikas, K. Palin, N. Sinjushina, et al.R. Rautiainen, J. Partanen, E. Ukkonen, J. Taipale posted to dna_protein_interactions by absterga on 2009-07-15 23:10:47 as along with 16 people and 5 groups xingxu cisstem Terkko kaarsinogen tuck brant xwbcn dchughes nickluscombe olympos cabbagezs karfunkel maximilianh heliopais oelemento emptyhb Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling
	Quantitative high-throughput analysis of transcription factor binding specificities. [My Copy] Nucleic acids research, Vol. 32, No. 4. (2004) by J. Linnell, R. Mott, S. Field, D. P. Kwiatkowski, J. Ragoussis, I. A. Udalova posted to dna_protein_interactions by absterga on 2009-07-15 23:07:50 as along with 2 people lptolik yevishere
	Quantitative specificity of the Mnt repressor 1 [My Copy] Journal of Molecular Biology, Vol. 271, No. 2. (15 August 1997), pp. 178-194. by Dana S. Fields, Yi-Yuan He, Ahmed Y. Al-Uzri, Gary D. Stormo posted to dna_protein_interactions selex by absterga on 2009-07-15 23:05:17 as along with 1 person emptyhb
	Defining the sequence-recognition profile of DNA-binding molecules [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 4. (24 January 2006), pp. 867-872. by Christopher L. Warren, Natasha C. S. Kratochvil, Karl E. Hauschild, et al.Shane Foister, Mary L. Brezinski, Peter B. Dervan, George N. Phillips, Aseem Z. Ansari posted to dna_protein_interactions by absterga on 2009-07-15 19:12:01 as along with 5 people and 1 group indigoviolet emilyhare samal stsaft blobbybirdman EisenLab
	A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors [My Copy] Genome Research, Vol. 16, No. 5. (May 2006), pp. 669-677. by Stuart Huntley, Daniel M. Baggott, Aaron T. Hamilton, et al.Mary Tran-Gyamfi, Shan Yang, Joomyeong Kim, Laurie Gordon, Elbert Branscomb, Lisa Stubbs posted to dna_protein_interactions by absterga on 2009-07-15 17:39:07 as along with 1 person and 1 group nickluscombe EBI-regulation
	Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities [My Copy] Nature Biotechnology, Vol. 24, No. 11. (24 September 2006), pp. 1429-1435. by Michael F. Berger, Anthony A. Philippakis, Aaron M. Qureshi, Fangxue S. He, Preston W. Estep, Martha L. Bulyk posted to cool_technique dna_protein_interactions transcription_factors by absterga on 2009-07-04 03:37:54 as along with 11 people and 1 group seb1 cambray aalibes jfr dpollard stsaft maldi cthachuk olympos yevishere kristallreiner EisenLab
	Diversity and complexity in DNA recognition by transcription factors. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5935. (26 June 2009), pp. 1720-1723. by Gwenael Badis, Michael F. Berger, Anthony A. Philippakis, et al.Shaheynoor Talukder, Andrew R. Gehrke, Savina A. Jaeger, Esther T. Chan, Genita Metzler, Anastasia Vedenko, Xiaoyu Chen, Hanna Kuznetsov, Chi-Fong F. Wang, David Coburn, Daniel E. Newburger, Quaid Morris, Timothy R. Hughes, Martha L. Bulyk posted to dna_protein_interactions tf_project transcription_factors by absterga on 2009-07-02 07:33:59 as along with 25 people and 1 group vingron bsamal sebastien_vigneau nklee sconlan isimpson jbhiatt daforerog mingzhi galka8_diploma fenghezi TRHvidsten ilyashl cambray rpatward tibbitts dpollard siebert JustinCrocker burak aalibes dipenps roys emptyhb tmmurali RockmanLab
	High-throughput SELEX-SAGE method for quantitative modeling of transcription-factor binding sites [My Copy] Nat Biotech, Vol. 20, No. 8. (August 2002), pp. 831-835. by Emmanuelle Roulet, Stephane Busso, Anamaria A. Camargo, Andrew J. Simpson, Nicolas Mermod, Philipp Bucher posted to dna_protein_interactions selex tf_project by absterga on 2009-07-02 07:20:03 as along with 1 person and 1 group malcook SIMR bioinformatics
	Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase [My Copy] Science, Vol. 249, No. 4968. (3 August 1990), pp. 505-510. by C. Tuerk, L. Gold posted to dna_protein_interactions read selex tf_project by absterga on 2009-07-02 07:16:54 as along with 3 people and 3 groups malcook indigoviolet jonathanjacobs SIMR bioinformatics EisenLab Molecular Biology
	Metformin and Insulin Suppress Hepatic Gluconeogenesis through Phosphorylation of CREB Binding Protein [My Copy] Cell, Vol. 137, No. 4. (15 May 2009), pp. 635-646. by Ling He, Amin Sabet, Stephen Djedjos, et al.Ryan Miller, Xiaojian Sun, Mehboob A. Hussain, Sally Radovick, Fredric E. Wondisford posted to dna_protein_interactions drug_discovery endocrine insulin read by absterga on 2009-05-26 20:00:09 as along with 1 person booker
	Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay. [My Copy] Nature, Vol. 458, No. 7242. (30 April 2009), pp. 1185-1190. by Kazufumi Matsushita, Osamu Takeuchi, Daron M. Standley, et al.Yutaro Kumagai, Tatsukata Kawagoe, Tohru Miyake, Takashi Satoh, Hiroki Kato, Tohru Tsujimura, Haruki Nakamura, Shizuo Akira posted to dna_protein_interactions immunology mouse_knockout by absterga on 2009-05-05 21:28:15 as along with 1 person tprpip
	Embryonic stem cells use ZFP809 to silence retroviral DNAs [My Copy] Nature, Vol. 458, No. 7242. (30 April 2009), pp. 1201-1204. by Daniel Wolf, Stephen P. Goff posted to dna_protein_interactions immunology read stem_cells transcription_factors by absterga on 2009-05-05 21:24:13 as along with 1 person gdb
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to dna_protein_interactions enhancers functional_non_coding_regions structure by absterga on 2009-04-17 22:13:44 as along with 40 people and 6 groups provero rsaito daveGerrard operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma rpatward timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak BergmanLab Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	DNA binding site sequence directs glucocorticoid receptor structure and activity. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 407-410. by Sebastiaan H. Meijsing, Miles A. Pufall, Alex Y. So, Darren L. Bates, Lin Chen, Keith R. Yamamoto posted to dna_protein_interactions by absterga on 2009-04-17 22:07:55 as along with 7 people and 1 group Annab sebastien_vigneau JustinCrocker fenghezi bpcusack jbhiatt djkt BenosLab
	Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 218-223. by Nicholas T. Ingolia, Sina Ghaemmaghami, John R. S. Newman, Jonathan S. Weissman posted to cool_technique dna_protein_interactions massivly_parallel_sequencing mrna ribosome by absterga on 2009-04-10 00:25:47 as along with 18 people and 3 groups hzoltan jwfoley yyfwuhan gbloeb guhjy dpollard fenghezi gangcai idonaldson coela fpattyn jbhiatt kshundyak myzhang bertelsen VGreiff provero kinestetika RockmanLab NYU Journal Review microbiology_nijmegen
	Polycomb Proteins Remain Bound to Chromatin and DNA during DNA Replication In Vitro [My Copy] Cell, Vol. 137, No. 1. (03 April 2009), pp. 110-122. by Nicole J. Francis, Nicole E. Follmer, Matthew D. Simon, George Aghia, Jeffrey D. Butler posted to chromatin dna_protein_interactions dna_replication polycomb read by absterga on 2009-04-09 20:40:57 as along with 2 people and 2 groups cisevol inesdesantiago JLab BergmanLab
	High-resolution DNA-binding specificity analysis of yeast transcription factors. [My Copy] Genome research, Vol. 19, No. 4. (21 April 2009), pp. 556-566. by Cong Zhu, Kelsey J. Byers, Rachel Patton P. McCord, et al.Zhenwei Shi, Michael F. Berger, Daniel E. Newburger, Katrina Saulrieta, Zachary Smith, Mita V. Shah, Mathangi Radhakrishnan, Anthony A. Philippakis, Yanhui Hu, Federico De Masi, Marcin Pacek, Andreas Rolfs, Tal Murthy, Joshua Labaer, Martha L. Bulyk posted to dna_protein_interactions massivly_parallel_sequencing read transcription_factors yeast by absterga on 2009-04-06 07:32:02 as along with 9 people matted austin_mcdonald siebert dolchan rpatward xwbcn djkt kristallreiner aalibes
	Promoter features related to tissue specificity as measured by Shannon entropy [My Copy] Genome Biology, Vol. 6, No. 4. (2005), R33. by Jonathan Schug, Winfried P. Schuller, Claudia Kappen, J. Michael Salbaum, Maja Bucan, Christian Stoeckert posted to dna_protein_interactions promoters tissue_specificity transcription_factors by absterga on 2009-03-23 20:05:33 as along with 3 people hagechouchin443 xwbcn jschug
	Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome [My Copy] Nat Genet, Vol. 39, No. 3. (04 February 2007), pp. 311-318. by Nathaniel D. Heintzman, Rhona K. Stuart, Gary Hon, et al.Yutao Fu, Christina W. Ching, R. David Hawkins, Leah O. Barrera, Sara Van Calcar, Chunxu Qu, Keith A. Ching, Wei Wang, Zhiping Weng, Roland D. Green, Gregory E. Crawford, Bing Ren posted to chromatin dna_protein_interactions mathamatical_modeling promoters transcription_factors by absterga on 2009-03-23 19:54:28 as along with 13 people and 2 groups rsaito tonamswish hagechouchin443 suizifish raylim kengg djkt mgaldzic olympos skoch3 epigenetics caseybrown inesdesantiago CHIP Plantandetc
	In vivo footprinting of a muscle specific enhancer by ligation mediated PCR [My Copy] Science, Vol. 246, No. 4931. (10 November 1989), pp. 780-786. by P. R. Mueller, B. Wold posted to chromatin classic cool_technique dna_protein_interactions dnaaei epigenetics promoters transcription_factors by absterga on 2009-03-23 18:33:14 as
	Histone modifications at human enhancers reflect global cell-type-specific gene expression [My Copy] Nature, Vol. AOP (18 March 2009) by Nathaniel posted to chip-seq dna_protein_interactions epigenetics histone_modifications massivly_parallel_sequencing read by absterga on 2009-03-18 23:52:52 as
	The DNA-encoded nucleosome organization of a eukaryotic genome. [My Copy] Nature, Vol. 458, No. 7236. (19 March 2009), pp. 362-366. by Noam Kaplan, Irene K. Moore, Yvonne Fondufe-Mittendorf, et al.Andrea J. Gossett, Desiree Tillo, Yair Field, Emily M. LeProust, Timothy R. Hughes, Jason D. Lieb, Jonathan Widom, Eran Segal posted to dna_protein_interactions epigenetics mathamatical_modeling read by absterga on 2009-03-18 22:25:41 as along with 10 people and 1 group clearbluespring suizifish inesdesantiago gdb kshundyak rschulz skoch3 WanderingAengus dchughes maximilianh Koch_Lab
	Direct interaction between Sp1 and the BPV enhancer E2 protein mediates synergistic activation of transcription. [My Copy] Cell, Vol. 65, No. 3. (3 May 1991), pp. 493-505. by R. Li, J. D. Knight, S. P. Jackson, R. Tjian, M. R. Botchan posted to classic dna_protein_interactions epigenetics protein_protein_interactions structure by absterga on 2009-03-15 21:54:58 as
	Transcription Factors and Human Disease (Oxford Monographs on Medical Genetics) [My Copy] (15 September 1989) by Gregg L. Semenza posted to book clinical dna_protein_interactions transcription_factors by absterga on 2009-03-15 20:28:16 as
	Genome-wide profiling of salt fractions maps physical properties of chromatin [My Copy] Genome Research, Vol. 19, No. 3. (March 2009), pp. 460-469. by Steven Henikoff, Jorja G. Henikoff, Akiko Sakai, Gabriel B. Loeb, Kami Ahmad posted to chip-seq chromatin dna_protein_interactions massivly_parallel_sequencing promoters read structure by absterga on 2009-03-06 08:13:28 as along with 1 person emptyhb
	Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers. [My Copy] Genome research (7 January 2009) by Jerome Eeckhoute, Mathieu Lupien, Clifford Meyer, et al.Michael Verzi, Ramesh Shivdasani, X Shirley S. Liu, Myles Brown posted to chip-seq dna_protein_interactions massivly_parallel_sequencing promoters transcription_factors by absterga on 2009-03-06 08:09:14 as along with 4 people fenghezi djkt JustinCrocker idonaldson
	CTCF physically links cohesin to chromatin. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 24. (17 June 2008), pp. 8309-8314. by Eric D. Rubio, David J. Reiss, Piri L. Welcsh, et al.Christine M. Disteche, Galina N. Filippova, Nitin S. Baliga, Ruedi Aebersold, Jeffrey A. Ranish, Anton Krumm posted to chip-seq ctcf dna_protein_interactions icat mass_spec protein_protein_interactions read transcription_factors by absterga on 2009-03-03 18:58:42 as along with 3 people diaz0058 sebastien_vigneau inesdesantiago
	A transcription factor affinity-based code for mammalian transcription initiation [My Copy] Genome Research, Vol. 19, No. 4. (13 April 2009), pp. 644-656. by Molly Megraw, Fernando Pereira, Shane T. Jensen, Uwe Ohler, Artemis G. Hatzigeorgiou posted to dna_protein_interactions epigenetics massivly_parallel_sequencing mrna promoters transcription_factors by absterga on 2009-03-02 16:10:28 as along with 9 people and 1 group heliopais guhjy tonamswish rpatward siebert biozhang2001 jbhiatt samgj daforerog microRNA
	Reverse ChIP [My Copy] Nature Methods, Vol. 6, No. 187. (March 2009), pp. 187-187. by Nicole Rusk posted to chip-seq cool_technique dna_protein_interactions mass_spec promoters read transcription_factors by absterga on 2009-02-27 02:31:54 as
	A mechanosensitive transcriptional mechanism that controls angiogenesis [My Copy] Nature, Vol. 457, No. 7233. (26 February 2009), pp. 1103-1108. by Akiko Mammoto, Kip M. Connor, Tadanori Mammoto, et al.Chong W. Yung, Dongeun Huh, Christopher M. Aderman, Gustavo Mostoslavsky, Lois E. Smith, Donald E. Ingber posted to angiogenesis dna_protein_interactions transcription_factors by absterga on 2009-02-26 19:48:29 as along with 2 people grahamc chigle
	A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements. [My Copy] Genome research, Vol. 19, No. 2. (17 February 2009), pp. 284-293. by G. Mittler, F. Butter, M. Mann posted to cool_technique dna_protein_interactions mass_spec read by absterga on 2009-02-23 19:39:06 as along with 4 people and 1 group xingxu skoch3 guhjy brianb Koch_Lab

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read	161
clinical	112
case_reports	47
cancer	46
genetics_paper	40
zinc_finger	39
dna_protein_interactions	38
hematology	33
ewings_sarcoma	31
dna_binding_motif	30
genome_550	29
tf_project	27
massivly_parallel_sequencing	26
immunology	26
transcription_factors	25
cool_technique	24
paper	22
dnasei_hypersensitivity	20
neuro	19
nuclear_permeabilization	18
dna_methylation_protien-binding	17
structure	17
drug_discovery	16
dnasei	16
cardiac	16
rna_gain_of_function	15
ews-fli1	15
stem_cells	14
mass_spec	13
selex	13
mouse_knockout	12
mathamatical_modeling	12
histone_modifications	12
mutation	11
chromatin	11
psychiatry	11
mrna	11
k562	11
review	11
promoters	11
journal_club	9
hl-60	9
malignant_transformation	9
mpnst	9
endocrine	9
epigenetics	8
yeast	8
differentiation	8
renal	8
classic	8
transcription	7
therapies	7
protein_protein_interactions	7
chip-seq	7
platlets	7
dna_methylation	7
gi	7
ctcf	7
resistance	6
pulmonary	6
cnvs	5
virus	5
nejm	5
hiv	4
cellular_decisions	4
dna_binding_ms	4
evolution	4
unread	4
muscleblind	4
snp_chip	4
py	4
tuberculosis	4
mri	3
rbc	3
nmr	3
insulin	3
tissue_specificity	3
biomarker	3
dna_detection	3
diagnostic_testing	3
autoimmunity	3
cml	3
nucleosome	3
ptm	3
tregs	3
antibodies	3
genetic_disease	3
gene_therapy	3
adipose	3
angiogenesis	2
chaperone	2
snp	2
interactome	2
c_elegans	2
dna_replication	2
apl	2
rna	2
development	2
stress	2
microbes	2
ips	2
dermatology	2
global_warming	2
battery	2
lipid	2
bcl-2	2
reproduction	2
dna_demethylation	2
zebra_fish	2
ews-etv1	2
optics	2
dnaaei	2
polycomb	2
master_switches	2
enhancers	2
ews-erg	2
noise	2
cell_migration	1
gwa_study	1
apoptosis	1
immune	1
e_coli	1
beta_thalassemia	1
srm	1
not_finished	1
mouse	1
ph_domain	1
aging	1
scan_domain	1
cell_cycle	1
human_genetics	1
malaria	1
rafts	1
post_transcriptional_processing	1
systems_biology	1
scleroderma	1
book	1
single_cell	1
ultrasensative_systems	1
single_molecule	1
ace_levels	1
icat	1
splicing	1
nuclear_pore_complex	1
ribosome	1
lad	1
ubiquitin	1
pet	1
dna_assembly	1
social_sciences	1
indel	1
phosphatase	1
cebpe	1
carbon_storage	1
functional_non_coding_regions	1
oncogene	1
lab	1
cell_death	1
sleep	1
th17	1
next	1
proteasome	1
pml	1
dlbcl	1
bones	1
schizophrenia	1
mrna-seq	1
drosophila	1

absterga's dna_protein_interactions [38 articles] Export

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