adilson_mohr's library 25 articles Export

	Explicit design of FPGA-based coprocessors for short-range force computations in molecular dynamics simulations☆☆☆ [My Copy] Parallel Computing, Vol. 34, No. 4-5. (May 2008), pp. 261-277. by Y. Gu, T. Vancourt, M. Herbordt posted to no-tag by adilson_mohr on 2009-06-08 15:40:41 as along with 2 people and 1 group gferencz peskin rit_ee732
	Integrating FPGA Acceleration into the Protomol Molecular Dynamics Code: Preliminary Report [My Copy] Field-Programmable Custom Computing Machines, 2006. FCCM '06. 14th Annual IEEE Symposium on In Field-Programmable Custom Computing Machines, 2006. FCCM '06. 14th Annual IEEE Symposium on (2006), pp. 315-316. by Yongfeng Gu, T. Vancourt, M. C. Herbordt posted to no-tag by adilson_mohr on 2009-06-08 15:32:07 as
	Preliminary report: FPGA acceleration of molecular dynamics computations [My Copy] Field-Programmable Custom Computing Machines, 2005. FCCM 2005. 13th Annual IEEE Symposium on In Field-Programmable Custom Computing Machines, 2005. FCCM 2005. 13th Annual IEEE Symposium on (2005), pp. 269-270. by Y. Gu, T. Van Court, D. Disabello, M. C. Herbordt posted to no-tag by adilson_mohr on 2009-06-08 15:30:10 as
	Reconfigurable molecular dynamics simulator [My Copy] Field-Programmable Custom Computing Machines, 2004. FCCM 2004. 12th Annual IEEE Symposium on, Vol. 0 (23 April 2004), pp. 197-206. by N. Azizi, I. Kuon, A. Egier, A. Darabiha, P. Chow posted to no-tag by adilson_mohr on 2009-06-08 14:50:28 as along with 3 people and 1 group anallam gferencz gantlord rit_ee732
	Efficient and accurate FPGA-based simulator for Molecular Dynamics [My Copy] Parallel and Distributed Processing, 2008. IPDPS 2008. IEEE International Symposium on In Parallel and Distributed Processing, 2008. IPDPS 2008. IEEE International Symposium on (2008), pp. 1-7. by Eunjung Cho, A. G. Bourgeois, J. A. Fernandez-Zepeda posted to cho08 by adilson_mohr on 2009-06-08 14:06:26 as along with 1 person and 1 group gferencz rit_ee732
	Improved Interpolation and System Integration for FPGA-Based Molecular Dynamics Simulations [My Copy] Field Programmable Logic and Applications, 2006. FPL '06. International Conference on In Field Programmable Logic and Applications, 2006. FPL '06. International Conference on (2006), pp. 1-8. by Yongfeng Gu, T. Vancourt, M. C. Herbordt posted to gu06 by adilson_mohr on 2009-06-08 14:01:30 as along with 2 people and 1 group gferencz peskin rit_ee732
	Adventures in Improving the Scaling and Accuracy of a Parallel Molecular Dynamics Program [My Copy] J. Supercomput., Vol. 11, No. 3. (1 November 1997), pp. 255-278. by Michael Crowley, Tom Darden, Thomas Cheatham, David Deerfield posted to cro97 by adilson_mohr on 2008-11-15 13:48:58 as along with 2 people anallam mmuecke
	FPGA-Accelerated Molecular Dynamics Simulations: An Overview [My Copy] Reconfigurable Computing: Architectures, Tools and Applications (2007), pp. 293-301. by Xiaodong Yang, Shengmei Mou, Yong Dou posted to yan07 by adilson_mohr on 2008-10-15 19:44:43 as
	Preliminary Investigation of Advanced Electrostatics in Molecular Dynamics on Reconfigurable Computers [My Copy] Supercomputing, 2006. SC '06. Proceedings of the ACM/IEEE SC 2006 Conference In Supercomputing, 2006. SC '06. Proceedings of the ACM/IEEE SC 2006 Conference (2006), pp. 45-45. by R. Scrofano, V. K. Prasanna posted to scr06 by adilson_mohr on 2008-10-15 19:42:41 as
	Practical FPGA Programming in C (Prentice Hall Modern Semiconductor Design Series' Sub Series: PH Signal Integrity Library) [My Copy] (02 May 2005) by David Pellerin, Edward A. Thibault posted to pel05 by adilson_mohr on 2008-10-15 19:35:35 as
	Simulation Modeling and Analysis (Industrial Engineering and Management Science Series) [My Copy] (30 December 1999) by Averill Law, David W. Kelton posted to law00 by adilson_mohr on 2008-10-15 19:27:34 as
	Hardware and software systems for accelerating common bioinformatics sequence analysis algorithms [My Copy] Drug Discovery Today: BIOSILICO, Vol. 2, No. 1. (01 January 2004), pp. 12-17. by R. Luethy posted to lue04 by adilson_mohr on 2008-10-15 19:23:46 as
	Hardware acceleration of sequence alignment algorithms-an overview [My Copy] Design & Technology of Integrated Systems in Nanoscale Era, 2007. DTIS. International Conference on In Design & Technology of Integrated Systems in Nanoscale Era, 2007. DTIS. International Conference on (2007), pp. 92-97. by L. Hasan, Z. Al-Ars, S. Vassiliadis posted to has07 by adilson_mohr on 2008-10-15 19:15:58 as along with 1 person Jingbo
	FPGA-Based Multigrid Computation for Molecular Dynamics Simulations [My Copy] Field-Programmable Custom Computing Machines, 2007. FCCM 2007. 15th Annual IEEE Symposium on In Field-Programmable Custom Computing Machines, 2007. FCCM 2007. 15th Annual IEEE Symposium on (2007), pp. 117-126. by Yongfeng Gu, Martin C. Herbordt posted to gu07a by adilson_mohr on 2008-10-15 19:09:40 as along with 3 people and 1 group gferencz peskin reactgary rit_ee732
	Accelerating molecular dynamics simulations with configurable circuits [My Copy] Computers and Digital Techniques, IEE Proceedings - In Computers and Digital Techniques, IEE Proceedings -, Vol. 153, No. 3. (2006), pp. 189-195. by Y. Gu, T. Vancourt, M. C. Herbordt posted to gu06 by adilson_mohr on 2008-10-15 19:05:59 as
	Accelerating molecular dynamics simulations with configurable circuits [My Copy] International Conference on Field Programmable Logic and Applications In Field Programmable Logic and Applications, 2005. International Conference on, Vol. 0 (2005), pp. 475-480. by Yongfeng Gu, T. Vancourt, M. C. Herbordt posted to gu05 by adilson_mohr on 2008-10-15 19:03:47 as along with 2 people and 1 group anallam gferencz rit_ee732
	Molecular dynamics simulations of biomolecules. [My Copy] Nat Struct Biol, Vol. 9, No. 9. (September 2002), pp. 646-652. by M. Karplus, J. A. McCammon posted to kar02 by adilson_mohr on 2008-10-15 18:49:54 as along with 8 people saravan yxue onufriev yalexeev baaden aqeel RamuAnandakrishnan LamBras
	Protein-Folding Dynamics: Overview of Molecular Simulation Techniques [My Copy] Annual Review of Physical Chemistry, Vol. 58, No. 1. (2007), pp. 57-83. by H. A. Scheraga, M. Khalili, A. Liwo posted to sch07 by adilson_mohr on 2008-06-23 16:36:05 as along with 3 people Diego_Prada dgront choonpeng
	Anton, a special-purpose machine for molecular dynamics simulation [My Copy] SIGARCH Comput. Archit. News, Vol. 35, No. 2. (May 2007), pp. 1-12. by David E. Shaw, Martin M. Deneroff, Ron O. Dror, et al.Jeffrey S. Kuskin, Richard H. Larson, John K. Salmon, Cliff Young, Brannon Batson, Kevin J. Bowers, Jack C. Chao, Michael P. Eastwood, Joseph Gagliardo, J. P. Grossman, Richard C. Ho, Douglas J. Ierardi, István Kolossváry, John L. Klepeis, Timothy Layman, Christine Mcleavey, Mark A. Moraes, Rolf Mueller, Edward C. Priest, Yibing Shan, Jochen Spengler, Michael Theobald, Brian Towles, Stanley C. Wang posted to sha07 by adilson_mohr on 2008-06-23 16:31:29 as along with 1 person mwmarkland
	What is bioinformatics? A proposed definition and overview of the field. [My Copy] Methods Inf Med, Vol. 40, No. 4. (2001), pp. 346-358. by N. M. Luscombe, D. Greenbaum, M. Gerstein posted to no-tag by adilson_mohr on 2008-06-23 16:26:13 as along with 1 person minostro
	Achieving High Performance with FPGA-Based Computing [My Copy] Computer, Vol. 40, No. 3. (2007), pp. 50-57. by Martin C. Herbordt, Tom Vancourt, Yongfeng Gu, et al.Bharat Sukhwani, Al Conti, Josh Model, Doug Disabello posted to no-tag by adilson_mohr on 2008-06-23 16:03:53 as along with 4 people gferencz hamish peskin smithmc
	Molecular dynamics simulations [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 2. (1 April 2002), pp. 190-196. by Tomas Hansson, Chris Oostenbrink, Wilfredf van Gunsteren posted to no-tag by adilson_mohr on 2008-06-23 15:56:34 as along with 2 people and 1 group aqeel yongzhao TSRI_MGL
	Accelerating Molecular Dynamics Simulations with Reconfigurable Computers [My Copy] Parallel and Distributed Systems, IEEE Transactions on In Parallel and Distributed Systems, IEEE Transactions on, Vol. 19, No. 6. (2008), pp. 764-778. by R. Scrofano, M. B. Gokhale, F. Trouw, V. K. Prasanna posted to no_li by adilson_mohr on 2008-06-23 15:35:41 as along with 4 people and 1 group aso6678 anallam gferencz mmuecke rit_ee732
	The Amber biomolecular simulation programs. [My Copy] Journal of computational chemistry, Vol. 26, No. 16. (December 2005), pp. 1668-1688. by David A. Case, Thomas E. Cheatham, Tom Darden, et al.Holger Gohlke, Ray Luo, Kenneth M. Merz, Alexey Onufriev, Carlos Simmerling, Bing Wang, Robert J. Woods posted to no-tag by adilson_mohr on 2008-06-23 15:26:46 as along with 18 people and 3 groups krapnik csrocha nickolay mmuecke flbarroso charris5 pavanghatty tahereh62 lna jwm ttjoseph xdeupi tovrstra bilab RamuAnandakrishnan IrinaMoreira mikaellund gisle Radiation_Damage Stressosome LabCompMed
	Using FPGA Devices to Accelerate Biomolecular Simulations [My Copy] Computer In Computer, Vol. 40, No. 3. (2007), pp. 66-73. by Sadaf R. Alam, Pratul K. Agarwal, Melissa C. Smith, Jeffrey S. Vetter, David Caliga posted to no-tag by adilson_mohr on 2008-06-23 15:24:57 as along with 7 people and 1 group gferencz anallam aso6678 hamish peskin smithmc mmuecke rit_ee732