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adoms's library [163 articles]

Recent papers added to adoms's library.
  • Evaluation of ontology development tools for bioinformatics.
    Bioinformatics, Vol. 19, No. 12. (12 August 2003), pp. 1564-1571.
  • Facts from text-is text mining ready to deliver?
    PLoS Biol, Vol. 3, No. 2. (February 2005)
  • HubMed: a web-based biomedical literature search interface.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by AD Eaton
  • Usage patterns of collaborative tagging systems
    J. Inf. Sci., Vol. 32, No. 2. (April 2006), pp. 198-208.
    by Scott A Golder, Bernardo A Huberman
  • The meaning and use of the area under a receiver operating characteristic (ROC) curve.
    Radiology, Vol. 143, No. 1. (April 1982), pp. 29-36.
    by JA Hanley, BJ McNeil
  • An evaluation of adaptive filtering in the context of realistic task-based information exploration
    Inf. Process. Manage., Vol. 44, No. 2. (March 2008), pp. 511-533.
    by Daqing He, Peter Brusilovsky, Jaewook Ahn, Jonathan Grady, Rosta Farzan, Yefei Peng, Yiming Yang, Monica Rogati
    posted to no-tag by adoms on 2008-04-11 08:07:28 as ** along with 5 people katja ctl xiaoyan2006 codex 55knots
  • The BioPrompt-box: an ontology-based clustering tool for searching in biological databases
    BMC Bioinformatics, Vol. 8, No. Suppl 1. (2007)
    by Claudio Corsi, Paolo Ferragina, Roberto Marangoni
    posted to no-tag by adoms on 2008-04-10 21:24:03 as ** along with 2 people jyuh ansu
  • A literature network of human genes for high-throughput analysis of gene expression.
    Nat Genet, Vol. 28, No. 1. (May 2001), pp. 21-28.
  • Content-rich biological network constructed by mining PubMed abstracts.
    BMC Bioinformatics, Vol. 5, No. 1. (8 October 2004)
    by H Chen, BM Sharp
  • EBIMed--text crunching to gather facts for proteins from Medline.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    posted to no-tag by adoms on 2008-04-09 18:30:25 as **** along with 2 people jyuh dullhunk
  • Annotation of Chemical Named Entities
    (June 2007), pp. 55-64.
    by Peter Corbett, Colin Batchelor, Simone Teufel
    posted to ner by adoms on 2008-04-09 18:13:14 as ****
  • An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by EB Camon, DG Barrell, EC Dimmer, V Lee, M Magrane, J Maslen, D Binns, R Apweiler
  • Semantically linking and browsing PubMed abstracts with gene ontology
    BMC Genomics, Vol. 9, No. Suppl 1. (2008)
    by Bhanu Vanteru, Jahangheer Shaik, Mohammed Yeasin
    posted to no-tag by adoms on 2008-04-09 13:53:34 as ** along with 2 people yggdrasil jyuh
  • PubFocus: Semantic MEDLINE/PubMed citations analytics through integration of controlled biomedical dictionaries and ranking algorithm
    BMC Bioinformatics, Vol. 7 (02 October 2006), 424.
    by Maksim V Plikus, Zina Zhang, Cheng-Ming Chuong
  • Literature mining for the biologist: from information retrieval to biological discovery
    Nature Reviews Genetics, Vol. 7, No. 2. (2006), pp. 119-129.
    by Lars J Jensen, Jasmin Saric, Peer Bork
  • Text processing through Web services: Calling Whatizit
    Bioinformatics (15 November 2007), btm557.
    by Dietrich Rebholz-Schuhmann, Miguel Arregui, Sylvain Gaudan, Harald Kirsch, Antonio J Yepes
    posted to no-tag by adoms on 2008-04-08 16:24:49 as ** along with 4 people jyuh yas dullhunk Gaetan
  • A probabilistic analysis of the Rocchio algorithm with TFIDF for text categorization
    (1997), pp. 143-151.
    by Thorsten Joachims
    edited by Douglas H Fisher
  • Lingo: Search results clustering algorithm based on Singular Value Decomposition
    (2004)
    by S Law, O Jerzy, S Dawid
    posted to no-tag by adoms on 2008-04-08 10:41:20 as ** along with 2 people losinski stewi2
  • A gene network for navigating the literature.
    Nat Genet, Vol. 36, No. 7. (July 2004)
  • An integrated biomedical knowledge extraction and analysis platform: using federated search and document clustering technology.
    Methods Mol Biol, Vol. 356 (2006), pp. 293-300.
    by DP Taylor
    posted to no-tag by adoms on 2008-04-06 20:46:45 as **
  • Exploring Independent Trends in a Topic-Based Search Engine
    by Jukka Perkiö, Wray Buntine, Sami Perttu
    posted to no-tag by adoms on 2008-04-06 17:08:55 as ** along with 2 people scis0000001 tkmosk
  • Mining the biomedical literature in the genomic era: an overview.
    J Comput Biol, Vol. 10, No. 6. (2003), pp. 821-855.
  • askMEDLINE: a free-text, natural language query tool for MEDLINE/PubMed.
    BMC Med Inform Decis Mak, Vol. 5, No. 1. (10 March 2005)
    by Paul Fontelo, Fang Liu, Michael Ackerman
    posted to no-tag by adoms on 2008-04-04 17:23:09 as ** along with 3 people setar aokomatu kahumbu
  • Technical development of PubMed Interact: an improved interface for MEDLINE/PubMed searches
    BMC Medical Informatics and Decision Making, Vol. 6 (03 November 2006), 36.
    by Michael Muin, Paul Fontelo
    posted to gopubmed by adoms on 2008-04-04 17:20:09 as ** along with 2 people jyuh judiths
  • PICO Linguist and BabelMeSH: Development and Partial Evaluation of Evidence-based Multilanguage Search Tools for MEDLINE/PubMed.
    Stud Health Technol Inform, Vol. 129 (2007), pp. 817-821.
    by P Fontelo, F Liu, S Leon, A Anne, M Ackerman
    posted to gopubmed by adoms on 2008-04-04 17:14:15 as ** along with 1 person Gaetan
  • PubFinder: a tool for improving retrieval rate of relevant PubMed abstracts.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
  • Relemed: Sentence-level search engine with relevance score for the MEDLINE database of biomedical articles
    BMC Medical Informatics and Decision Making, Vol. 7 (10 January 2007), 1.
    by Mir S Siadaty, Jianfen Shu, William A Knaus
  • WordNet: An Electronic Lexical Database (Language, Speech, and Communication)
    (May 1998)
    posted to gopubmed lexical_database wordnet by adoms on 2008-04-04 09:53:55 as ****
  • Selective Studies and the Principle of Relative Frequency in Language
    (1932)
    by GK Zipf
    posted to gopubmed by adoms on 2008-04-04 09:53:55 as ****
  • Bewertung verschiedener paarweiser Alignment-Methoden, Ersetzungsmatrizen und Gap-Funktionen.
    (1997)
    by Kurt Ziegenbein
    posted to gopubmed by adoms on 2008-04-04 09:53:55 as ****
  • Recognizing names in biomedical texts: a machine learning approach
    Bioinformatics, Vol. 20(7) (May 2004), pp. 1178-90.
    by G Zhou, J Zhang, J Su, D Shen, C Tan
    posted to gopubmed by adoms on 2008-04-04 09:53:55 as ****
  • Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO).
    Bioinformatics, Vol. 19, No. 2. (Jan 2003), pp. 241-248.
    by Iwei Yeh, Peter D Karp, Natalya F Noy, Russ B Altman
  • BioCreAtIvE Task 1A: gene mention finding evaluation
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Alexander Yeh, Alexander Morgan, Marc Colosimo, Lynette Hirschman
    posted to gopubmed by adoms on 2008-04-04 09:53:55 as ****
  • The Universal Protein Resource (UniProt): an expanding universe of protein information.
    Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D187-D191.
    by Cathy H Wu, Rolf Apweiler, Amos Bairoch, Darren A Natale, Winona C Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria J Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris Suzek
  • A methodology to migrate the gene ontology to a description logic environment using DAML+OIL.
    Pac Symp Biocomput (2003), pp. 624-635.
    by CJ Wroe, R Stevens, CA Goble, M Ashburner
  • The genome sequence of Schizosaccharomyces pombe.
    Nature, Vol. 415, No. 6874. (Feb 2002), pp. 871-880.
  • SCOPPI: a structural classification of protein-protein interfaces.
    Nucleic Acids Res, Vol. 34, No. Database issue. (Jan 2006), pp. D310-D314.
    by Christof Winter, Andreas Henschel, Wan K Kim, Michael Schroeder
  • Database resources of the National Center for Biotechnology Information.
    Nucleic Acids Res, Vol. 35, No. Database issue. (Jan 2007), pp. D5-12.
    by David L Wheeler, Tanya Barrett, Dennis A Benson, Stephen H Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M Church, Michael Dicuccio, Ron Edgar, Scott Federhen, Lewis Y Geer, Yuri Kapustin, Oleg Khovayko, David Landsman, David J Lipman, Thomas L Madden, Donna R Maglott, James Ostell, Vadim Miller, Kim D Pruitt, Gregory D Schuler, Edwin Sequeira, Steven T Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L Tatusov, Tatiana A Tatusova, Lukas Wagner, Eugene Yaschenko
  • notes Some Biological Sequence Metrics
    Advances in Mathematics, Vol. 20, No. 3. (1976)
    by MS Watermann, TF Smith, WA Beyer
    posted to gopubmed by adoms on 2008-04-04 09:53:53 as ****
  • notes Sequence alignments in the neighborhood of the optimum with general application to dynamic programming
    Applied Mathematical Sciences, Vol. 80 (May 1983), pp. 3123-3124.
    by MS Watermann
    posted to gopubmed by adoms on 2008-04-04 09:53:53 as ****
  • Genew: the Human Gene Nomenclature Database, 2004 updates.
    Nucleic Acids Res, Vol. 32, No. Database issue. (Jan 2004), pp. D255-D257.
    by Hester M Wain, Michael J Lush, Fabrice Ducluzeau, Varsha K Khodiyar, Sue Povey
  • INNER NO OUTER regulates abaxial- adaxial patterning in Arabidopsis ovules
    Vol. 13, No. 23. (1999), pp. 3160-9.
    posted to gopubmed by adoms on 2008-04-04 09:53:53 as ****
  • Information Retrieval, 2nd edition
    (1979)
    posted to gopubmed by adoms on 2008-04-04 09:53:52 as ****
  • From genomics to proteomics
    Nature (London), Vol. 422 (2003), pp. 193-197.
    by Mike Tyers, M Mann
    posted to fs gopubmed proteomic by adoms on 2008-04-04 09:53:52 as ****
  • notes Common evaluation measures
    (2003)
    by C Tre
    posted to gopubmed by adoms on 2008-04-04 09:53:52 as ****
  • Automatic extraction of protein interactions from scientific abstracts
    (2002), pp. 538-49.
    by James Thomas, David Milward, Christos Ouzounis, Stephen Pulman, Mark Carroll
    posted to gopubmed by adoms on 2008-04-04 09:53:52 as ****
  • SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.
    BMC Bioinformatics, Vol. 7 (2006)
    by Joan Teyra, Andreas Doms, Michael Schroeder, Teresa M Pisabarro
  • MedMiner: internettext-mining tool for biomedical information, with application to gene expression profiling
    BioTechniques, Vol. 27, No. 6. (1999)
    by L Tanabe, U Scherf, Lh, Jk, L Hunter, Jn
    posted to gopubmed by adoms on 2008-04-04 09:53:52 as ****
  • Fish oil, Raynaud's syndrome, and undiscovered public knowledge
    Perspectives in Biology and Medicine, Vol. 30(1) (1986), pp. 7-18.
    by DR Swanson
    posted to gopubmed by adoms on 2008-04-04 09:53:52 as ****
  • Text mining: generating hypotheses from MEDLINE
    J. Am. Soc. Inf. Sci. Technol., Vol. 55, No. 5. (2004), pp. 396-413.
    by Padmini Srinivasan
    posted to gopubmed by adoms on 2008-04-04 09:53:52 as ****
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