agonzale's network [26 articles] Export

Recent papers added to agonzale's library classified by the tag network. You can also see everyone's network.

	Unbiased Reconstruction of a Mammalian Transcriptional Network Mediating Pathogen Responses [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 257-263. by Ido Amit, Manuel Garber, Nicolas Chevrier, et al.Ana P. Leite, Yoni Donner, Thomas Eisenhaure, Mitchell Guttman, Jennifer K. Grenier, Weibo Li, Or Zuk, Lisa A. Schubert, Brian Birditt, Tal Shay, Alon Goren, Xiaolan Zhang, Zachary Smith, Raquel Deering, Rebecca C. McDonald, Moran Cabili, Bradley E. Bernstein, John L. Rinn, Alex Meissner, David E. Root, Nir Hacohen, Aviv Regev posted to reconstruction network by agonzale on 2009-10-09 10:57:32 as along with 10 people friendpine xianjun inesdesantiago leliavski TRHvidsten gbloeb roys ptrobajo natgoodman tmmurali
	Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), 2624. by Nicola Bonzanni, Elzbieta Krepska, K. Anton Feenstra, et al.Wan Fokkink, Thilo Kielmann, Henri Bal, Jaap Heringa posted to network multicellular modeling by agonzale on 2009-09-28 02:07:44 as along with 1 person laurabertens
	Modelling and analysis of gene regulatory networks [My Copy] Nat Rev Mol Cell Biol, Vol. 9, No. 10. (October 2008), pp. 770-780. by Guy Karlebach, Ron Shamir posted to review network modeling by agonzale on 2009-09-03 07:28:30 as along with 14 people antonkratz cannin tklee aviad_work kaarsinogen thomaskelder fgibson druvus balicea brianb nedwards dakelley guhjy tmmurali
	Biological pathways as communicating computer systems [My Copy] Journal of cell science In J Cell Sci, Vol. 122, No. 16. (15 August 2009), pp. 2793-2800. by Marta Z. Kwiatkowska, John K. Heath posted to reconstruction network inference by agonzale on 2009-08-21 04:31:56 as along with 5 people and 1 group TimRooney daforerog cmura grahamc barry McCammon
	Uncovering operational interactions in genetic networks using asynchronous Boolean dynamics [My Copy] Journal of Theoretical Biology (12 June 2009) by L. Tournier, M. Chavesa posted to boolean modeling network by agonzale on 2009-06-18 03:03:53 as
	Inference of gene pathways using mixture Bayesian networks. [My Copy] BMC systems biology, Vol. 3, No. 1. (2009), 54. by Y. Ko, C. Zhai, S. Rodriguez-Zas posted to gene inference network by agonzale on 2009-05-22 06:04:04 as along with 4 people guhjy tinatoni operon TRHvidsten
	Boolean network-based analysis of the apoptosis network: irreversible apoptosis and stable surviving. [My Copy] Journal of theoretical biology, Vol. 259, No. 4. (21 August 2009), pp. 760-769. by Zhongxing Mai, Haiyan Liu posted to boolean network by agonzale on 2009-05-18 12:11:37 as along with 1 person schwartzjmc
	Proteomic and network analysis characterize stage-specific metabolism in Trypanosoma cruzi [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 52. by Seth Roberts, Jennifer Robichaux, Arvind Chavali, et al.Patricio Manque, Vladimir Lee, Ana Lara, Jason Papin, Gregory Buck posted to metabolic modeling network by agonzale on 2009-05-17 02:36:11 as
	Understanding human metabolic physiology: a genome-to-systems approach [My Copy] Trends in Biotechnology, Vol. 27, No. 1. (14 January 2009), pp. 37-44. by M. Mo, B. Palsson posted to inference network review by agonzale on 2009-05-09 05:44:30 as along with 5 people mingzhi schwartzjmc guhjy ptrobajo dullhunk
	Network reconstruction based on steady-state data. [My Copy] Essays in biochemistry, Vol. 45 (2008), pp. 161-176. by E. D. Sontag posted to inference network review by agonzale on 2009-05-09 05:43:19 as
	How to infer gene networks from expression profiles. [My Copy] Molecular systems biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted to inference network by agonzale on 2009-05-08 14:58:28 as along with 38 people and 3 groups Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel roys Neeperando APRegier rdiaz klo Borelli ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia tmmurali Jarman Lab EBI-regulation Plantandetc
	Inferring Direct Regulatory Targets of a Transcription Factor in the DREAM2 Challenge [My Copy] Annals of the New York Academy of Sciences, Vol. 1158, No. 1., pp. 215-223. by Vinsensius B. Vega, Xing Yi Y. Woo, Habib Hamidi, et al.Hock Chuan C. Yeo, Zhen Xuan X. Yeo, Guillaume Bourque, Neil D. Clarke posted to inference network by agonzale on 2009-05-08 08:29:16 as
	Inferring regulatory networks. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 263-275. by H. Li, J. Xuan, Y. Wang, M. Zhan posted to inference network by agonzale on 2009-05-08 04:11:35 as along with 4 people jago tvdbulck dolchan bertelsen
	Construction and application of a protein and genetic interaction network (yeast interactome) [My Copy] Nucl. Acids Res. (9 March 2009), gkp140. by Gregory R. Stuart, William C. Copeland, Micheline K. Strand posted to inference network by agonzale on 2009-05-08 03:53:15 as along with 2 people arne neils
	Towards zoomable multidimensional maps of the cell [My Copy] Nature Biotechnology, Vol. 25, No. 5. (04 May 2007), pp. 547-554. by Zhenjun Hu, Joe Mellor, Jie Wu, Minoru Kanehisa, Joshua M. Stuart, Charles Delisi posted to network visualization by agonzale on 2009-02-14 23:35:56 as along with 12 people Scis0000002 tmmurali kuhn cmmorel yas balajis thomaskelder dullhunk guhjy AlexanderPico carlk Borelli
	Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes. [My Copy] American journal of human genetics, Vol. 78, No. 6. (June 2006), pp. 1011-1025. by L. Franke, H. van Bakel, L. Fokkens, E. D. de Jong, M. Egmont-Petersen, C. Wijmenga posted to network reconstruction by agonzale on 2009-02-14 08:33:46 as along with 10 people and 1 group eesruiz saket jfr snuppepuppan guhjy lfriedl tabu samal mmt raiyar kdl
	Structural and Dynamical Analyses of the Kinase Network Derived from the Transpath Database [My Copy] Genome Informatics, Vol. 16, No. 1. (2005), 164. by B. Binder, R. Heinrich posted to dynamics network topology by agonzale on 2009-02-14 08:32:41 as
	Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4 [My Copy] Nature, Vol. 441 (May 2006), pp. 173-178. by Mark Gilchrist, Vesteinn Thorsson, Bin Li, et al.Alistair Rust, Martin Korb, Kathleen Kennedy, Tsonwin Hai, Hamid Bolouri, Alan Aderem posted to inference network by agonzale on 2009-02-03 07:12:41 as
	A mathematical framework for describing and analysing gene regulatory networks [My Copy] Journal of Theoretical Biology, Vol. 176 (xx 1995) posted to gene network by agonzale on 2009-02-03 07:12:40 as
	Simulating genetic networks made easy: network construction with simple building blocks. [My Copy] Bioinformatics (Oxford, England), Vol. 21 (Jan 2005), pp. 269-271. by Steven Vercruysse, Martin Kuiper posted to gene network by agonzale on 2009-02-03 07:12:40 as
	Qualitative simulation of genetic regulatory networks using piecewise-linear models. [My Copy] Bulletin of mathematical biology, Vol. 66 (Mar 2004), pp. 301-340. by Hidde de Jong, Jean L. Gouzé, Céline Hernandez, Michel Page, Tewfik Sari, Johannes Geiselmann posted to gene network by agonzale on 2009-02-03 07:12:40 as
	Genetic Network Analyzer: qualitative simulation of genetic regulatory networks. [My Copy] Bioinformatics (Oxford, England), Vol. 19 (Feb 2003), pp. 336-344. by Hidde de Jong, Johannes Geiselmann, Céline Hernandez, Michel Page posted to gene network by agonzale on 2009-02-03 07:12:40 as
	A General Modeling Strategy for Gene Regulatory Networks with Stochastic Dynamics [My Copy] Journal of Computational Biology, Vol. 13 (xx 2006) posted to gene network by agonzale on 2009-02-03 07:12:40 as
	Variations in DNA elucidate molecular networks that cause disease [My Copy] Nature, Vol. 452 (Mar 2008), pp. 429-435. by Yanqing Chen, Jun Zhu, Pek Y. Lum, et al.Xia Yang, Shirly Pinto, Douglas Macneil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig Sieberts, Amy Leonardson, Lawrence Castellini, Susanna Wang, Marie F. Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas Drake, Aldons Lusis, Eric Schadt posted to gene network by agonzale on 2009-02-03 07:12:35 as
	A map of human cancer signaling [My Copy] Mol Syst Biol, Vol. 3 (Dec 2007) by Qinghua Cui, Yun Ma, Maria Jaramillo, et al.Hamza Bari, Arif Awan, Song Yang, Simo Zhang, Lixue Liu, Meng Lu, Maureen O. Mccourt, Enrico Purisima, Edwin Wang posted to network by agonzale on 2009-02-03 07:12:35 as
	From Pathways Databases to Network Models of Switching Behavior [My Copy] PLoS Computational Biology, Vol. 3 (Sep 2007) by Baltazar D. Aguda, Andrew B. Goryachev posted to network by agonzale on 2009-02-03 07:12:34 as

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segmentation	252
drosophila	249
ap_boundary	178
mouse	158
experimental	156
dv_boundary	70
tfbs	63
thermodynamic_model	59
modeling	55
network	26
parameter_estimation	21
dde	21
logical	16
oscillations	16
mapk	13
human	12
zebrafish	11
fgf	10
inference	9
plde	8
reviews	8
hedgehog	8
xenopus	8
synchronization	8
chick	8
parameter	7
gene	7
review	6
values	6
wing_disc	6
retinoic	6
notch	5
equation	5
ode	5
mackey-glass	5
wnt	3
erk	3
visualization	3
reconstruction	3
snail	3
delay	3
mek1	3
circadian	3
yy1	3
kuramoto	3
systems_biology	3
wing	3
software	2
stochastic	2
cow	2
promoter	2
methylation	2
dynamics	2
boolean	2
stem_cells	2
insect	2
psm	2
synthetic_biology	2
numerical	1
cdx	1
kinase	1
self-repressed-gene	1
hill	1
follicle	1
translation	1
self-repressed	1
metabolic	1
physics	1
neural_tube	1
cyclinb1	1
simulation	1
robustness_analysis	1
tbox	1
stability	1
hes7	1
diffusion	1
development	1
medaka	1
wiki	1
pde	1
continuation	1
multicellular	1
topology	1
fuzzy_logic	1
logic	1
gradient	1
fluorescence	1
logical_models	1

agonzale's network [26 articles] Export

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