Binding free energy and counterion release for adsorption of the antimicrobial peptide lactoferricin B on a POPG membrane Export

@article{citeulike:5998203, abstract = {Molecular dynamics (MD) simulations are used to study the interaction of an anionic palmitoyl-oleoyl-phosphatidylglycerol (POPG) bilayer with the cationic antimicrobial peptide bovine lactoferricin (LFCinB) in a 100 mM NaCl solution at 310 K. The interaction of LFCinB with a POPG bilayer is employed as a model system for studying the details of membrane adsorption selectivity of cationic antimicrobial peptides. Seventy eight 4 ns MD production run trajectories of the equilibrated system, with six restrained orientations of LFCinB at 13 different separations from the POPG membrane, are generated to determine the free energy profile for the peptide as a function of the distance between LFCinB and the membrane surface. To calculate the profile for this relatively large system, a variant of constrained MD and thermodynamic integration is used. A simplified method for relating the free energy profile to the LFCinB-POPG membrane binding constant is employed to predict a free energy of adsorption of −5.4±1.3 kcal/mol and a corresponding maximum adsorption binding force of about 58 pN. We analyze the results using Poisson-Boltzmann theory. We find the peptide-membrane attraction to be dominated by the entropy increase due to the release of counterions and polarized water from the region between the charged membrane and peptide, as the two approach each other. We contrast these results with those found earlier for adsorption of LFCinB on the mammalianlike palmitoyl-oleoyl-phosphatidylcholine membrane.}, author = {Tolokh, Igor S. and Vivcharuk, Victor and Tomberli, Bruno and Gray, C. G.}, citeulike-article-id = {5998203}, citeulike-linkout-0 = {http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=VIRT02000018000007000050000001&idtype=cvips&gifs=yes}, citeulike-linkout-1 = {http://link.aps.org/abstract/PRE/v80/e031911}, journal = {Physical Review E (Statistical, Nonlinear, and Soft Matter Physics)}, keywords = {antimicrobial-peptide, free-energy}, number = {3}, pages = {031911+}, posted-at = {2009-10-23 17:16:16}, priority = {2}, publisher = {APS}, title = {Binding free energy and counterion release for adsorption of the antimicrobial peptide lactoferricin B on a POPG membrane}, url = {http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=VIRT02000018000007000050000001&idtype=cvips&gifs=yes}, volume = {80}, year = {2009} }

TY - JOUR ID - citeulike:5998203 L3 - citeulike-article-id:5998203 N2 - Molecular dynamics (MD) simulations are used to study the interaction of an anionic palmitoyl-oleoyl-phosphatidylglycerol (POPG) bilayer with the cationic antimicrobial peptide bovine lactoferricin (LFCinB) in a 100 mM NaCl solution at 310 K. The interaction of LFCinB with a POPG bilayer is employed as a model system for studying the details of membrane adsorption selectivity of cationic antimicrobial peptides. Seventy eight 4 ns MD production run trajectories of the equilibrated system, with six restrained orientations of LFCinB at 13 different separations from the POPG membrane, are generated to determine the free energy profile for the peptide as a function of the distance between LFCinB and the membrane surface. To calculate the profile for this relatively large system, a variant of constrained MD and thermodynamic integration is used. A simplified method for relating the free energy profile to the LFCinB-POPG membrane binding constant is employed to predict a free energy of adsorption of −5.4±1.3 kcal/mol and a corresponding maximum adsorption binding force of about 58 pN. We analyze the results using Poisson-Boltzmann theory. We find the peptide-membrane attraction to be dominated by the entropy increase due to the release of counterions and polarized water from the region between the charged membrane and peptide, as the two approach each other. We contrast these results with those found earlier for adsorption of LFCinB on the mammalianlike palmitoyl-oleoyl-phosphatidylcholine membrane. IS - 3 JF - Physical Review E (Statistical, Nonlinear, and Soft Matter Physics) TI - Binding free energy and counterion release for adsorption of the antimicrobial peptide lactoferricin B on a POPG membrane PB - APS VL - 80 SP - 031911 KW - antimicrobial-peptide KW - free-energy AU - Tolokh, Igor AU - Vivcharuk, Victor AU - Tomberli, Bruno AU - Gray, CG PY - 2009/// UR - http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=VIRT02000018000007000050000001&idtype=cvips&gifs=yes ER -