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	Free energies of stable and metastable pores in lipid membranes under tension [My Copy] The Journal of Chemical Physics, Vol. 131, No. 20. (2009), 205101. by Wouter K. den Otter posted to pores pore_size pore_formation coarse-grain by agrossfield on 2009-12-01 19:56:42 as along with 1 person paulschlesinger
	Location, Tilt, and Binding: A Molecular Dynamics Study of Voltage-Sensitive Dyes in Biomembranes [My Copy] The Journal of Physical Chemistry B (06 November 2009), 091106085645083. by Marlon J. Hinner, Siewert-J Marrink, Alex H. de Vries posted to dye coarse-grain by agrossfield on 2009-11-26 02:05:54 as
	Role of the Range in the Fluid−Crystal Coexistence for a Patchy Particle Model [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 46. (19 November 2009), pp. 15133-15136. by Flavio Romano, Eduardo Sanz, Francesco Sciortino posted to coarse-grain by agrossfield on 2009-11-17 02:36:07 as
	Solid-liquid phase equilibria of the Gaussian core model fluid [My Copy] The Journal of Chemical Physics, Vol. 131, No. 18. (2009), 184507. by Peter Mausbach, Alauddin Ahmed, Richard J. Sadus posted to coarse-grain by agrossfield on 2009-11-17 02:32:22 as
	A soft-core Gay--Berne model for the simulation of liquid crystals by Hamiltonian replica exchange [My Copy] The Journal of Chemical Physics, Vol. 131, No. 17. (2009), 174107. by Roberto Berardi, Claudio Zannoni, Juho S. Lintuvuori, Mark R. Wilson posted to replica-exchange coarse-grain by agrossfield on 2009-11-06 20:34:51 as
	Coarse-Grained Protein Model with Residue Orientation Energies Derived from Atomic Force Fields [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 44. (5 November 2009), pp. 14824-14830. by Marcos R. Betancourt posted to coarse-grain by agrossfield on 2009-10-30 03:02:32 as
	Coarse-Grained Molecular Dynamics Simulation of the Aggregation Properties of Multiheaded Cationic Surfactants in Water [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 41. (15 October 2009), pp. 13545-13550. by Suman K. Samanta, Santanu Bhattacharya, Prabal K. Maiti posted to coarse-grain antimicrobial-peptide by agrossfield on 2009-10-08 15:52:12 as
	Role of Short-Range Directional Interactions in Coarse-Graining of Protic/Aprotic Liquids [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 39. (1 October 2009), pp. 12988-12998. by Piotr Kowalczyk, Piotr A. Gauden, Alina Ciach posted to coarse-grain by agrossfield on 2009-09-25 17:51:06 as
	Extended ensemble approach for deriving transferable coarse-grained potentials [My Copy] The Journal of Chemical Physics, Vol. 131, No. 10. (2009), 104110. by J. W. Mullinax, W. G. Noid posted to coarse-grain by agrossfield on 2009-09-15 13:10:10 as
	Coarse grained simulations of a small peptide: Effects of finite damping and hydrodynamic interactions [My Copy] The Journal of Chemical Physics, Vol. 131, No. 10. (2009), 104102. by Uwe Winter, Tihamér Geyer posted to integrator coarse-grain by agrossfield on 2009-09-15 13:09:33 as along with 3 people and 1 group dlimmer whitead paulschlesinger Jiang Research Group
	Theoretically informed coarse grain simulations of polymeric systems [My Copy] The Journal of Chemical Physics, Vol. 131, No. 8. (2009), 084903. by Darin Q. Pike, François A. Detcheverry, Marcus Müller, Juan J. de Pablo posted to field-theory coarse-grain by agrossfield on 2009-08-31 21:42:44 as
	Permeability of Small Molecules through a Lipid Bilayer: A Multiscale Simulation Study [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 35. (3 September 2009), pp. 12019-12029. by Mario Orsi, Wendy E. Sanderson, Jonathan W. Essex posted to gay-berne coarse-grain by agrossfield on 2009-08-28 15:57:25 as along with 1 person sobolevnrm
	Coarse-grained modeling of allosteric regulation in protein receptors [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 34. (25 August 2009), pp. 14253-14258. by Ilya A. Balabin, Weitao Yang, David N. Beratan posted to rhodopsin gpcr coarse-grain b2ar by agrossfield on 2009-08-28 14:04:12 as along with 4 people and 1 group sobolevnrm pmung jmccammon okapi McCammon
	Focused Functional Dynamics of Supramolecules by Use of a Mixed-Resolution Elastic Network Model [My Copy] Vol. 97, No. 4. (19 August 2009), pp. 1178-1187. by Ozge Kurkcuoglu, Osman T. Turgut, Sertan Cansu, Robert L. Jernigan, Pemra Doruker posted to network-model coarse-grain by agrossfield on 2009-08-18 20:49:20 as
	Systematic coarse graining from structure using internal states: Application to phospholipid/cholesterol bilayer [My Copy] The Journal of Chemical Physics, Vol. 131, No. 5. (2009), 055101. by Teemu Murtola, Mikko Karttunen, Ilpo Vattulainen posted to coarse-grain by agrossfield on 2009-08-07 20:37:29 as along with 3 people anuragsethi sobolevnrm cjryan
	Water Modeled As an Intermediate Element between Carbon and Silicon† [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 13. (2 April 2009), pp. 4008-4016. by Valeria Molinero, Emily B. Moore posted to coarse-grain ion-solvation by agrossfield on 2009-07-21 20:44:59 as
	Coarse-grained ions without charges: Reproducing the solvation structure of NaCl in water using short-ranged potentials [My Copy] The Journal of Chemical Physics, Vol. 131, No. 3. (2009), 034107. by Robert C. Demille, Valeria Molinero posted to coarse-grain ion-solvation by agrossfield on 2009-07-21 20:42:34 as along with 1 person dlimmer
	A coarse-grained potential for fold recognition and molecular dynamics simulations of proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2009), pp. 822-836. by Peter Májek, Ron Elber posted to coarse-grain by agrossfield on 2009-07-17 21:45:43 as along with 1 person paulschlesinger
	The multiscale coarse-graining method. III. A test of pairwise additivity of the coarse-grained potential and of new basis functions for the variational calculation [My Copy] The Journal of Chemical Physics, Vol. 131, No. 3. (2009), 034102. by Avisek Das, Hans C. Andersen posted to coarse-grain by agrossfield on 2009-07-15 20:51:57 as along with 3 people tomweingarten sobolevnrm dlimmer
	The multiscale coarse-graining method. IV. Transferring coarse-grained potentials between temperatures [My Copy] The Journal of Chemical Physics, Vol. 131, No. 2. (2009), 024103. by Vinod Krishna, Will G. Noid, Gregory A. Voth posted to coarse-grain by agrossfield on 2009-07-15 12:25:44 as along with 2 people tomweingarten sobolevnrm
	Toy amphiphiles on the computer: What can we learn from generic models? [My Copy] Macromolecular Rapid Communications, Vol. 30, No. 9-10. (2009), pp. 741-751. by Friederike Schmid posted to coarse-grain membrane-forcefield by agrossfield on 2009-06-28 17:05:43 as along with 1 person edws
	Generic coarse-grained model for protein folding and aggregation [My Copy] The Journal of Chemical Physics, Vol. 130, No. 23. (2009), 235106. by Tristan Bereau, Markus Deserno posted to coarse-grain protein-folding by agrossfield on 2009-06-22 17:07:01 as
	Coarse-grained molecular dynamics of ligands binding into protein: The case of HIV-1 protease inhibitors [My Copy] The Journal of Chemical Physics, Vol. 130, No. 21. (2009), 215102. by Dechang Li, Ming S. Liu, Baohua Ji, Kehchih Hwang, Yonggang Huang posted to coarse-grain by agrossfield on 2009-06-08 20:37:09 as
	Coarse-grained, density dependent implicit solvent model reliably reproduces behavior of a model surfactant system [My Copy] The Journal of Chemical Physics, Vol. 130, No. 20. (2009), 204903. by Erik C. Allen, Gregory C. Rutledge posted to coarse-grain by agrossfield on 2009-06-02 19:55:48 as
	Molecular Renormalization Group Coarse-Graining of Electrolyte Solutions: Application to Aqueous NaCl and KCl [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 22. (4 June 2009), pp. 7785-7793. by Alexey Savelyev, Garegin A. Papoian posted to coarse-grain ion-solvation by agrossfield on 2009-05-29 19:25:59 as along with 2 people and 1 group tomweingarten sobolevnrm baker-group
	Pairwise energies for polypeptide coarse-grained models derived from atomic force fields [My Copy] The Journal of Chemical Physics, Vol. 130, No. 19. (2009), 195103. by Marcos R. Betancourt, Sheyore J. Omovie posted to coarse-grain forcefield by agrossfield on 2009-05-22 12:23:42 as
	Bottom-up derivation of an effective thermostat for united atoms simulations of water [My Copy] The Journal of Chemical Physics, Vol. 130, No. 16. (2009), 164509. by Anders Eriksson, Martin N. Jacobi, Johan Nyström, Kolbjo posted to coarse-grain thermostats by agrossfield on 2009-05-01 12:15:34 as along with 1 person dlimmer
	Hybrid Coarse-Graining Approach for Lipid Bilayers at Large Length and Time Scales [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Gary S. Ayton, Gregory A. Voth posted to coarse-grain multiscale by agrossfield on 2009-03-28 15:11:40 as along with 1 person and 1 group sobolevnrm baker-group
	Solvent-Free Lipid Bilayer Model Using Multiscale Coarse-Graining [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 13. (2 April 2009), pp. 4443-4455. by Sergei Izvekov, Gregory A. Voth posted to coarse-grain multiscale by agrossfield on 2009-03-28 15:10:57 as along with 3 people and 1 group choonpeng flbarroso sobolevnrm baker-group
	Four-Scale Description of Membrane Sculpting by BAR Domains [My Copy] Vol. 95, No. 6. (15 September 2008), pp. 2806-2821. by Anton Arkhipov, Ying Yin, Klaus Schulten posted to coarse-grain lipid-protein-interactions by agrossfield on 2009-03-17 10:51:38 as
	Simulation Study of Protein-Mediated Vesicle Fusion [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 3. (22 January 2009), pp. 589-591. by Shaogui Wu, Hongxia Guo posted to coarse-grain membrane-fusion membrane-proteins by agrossfield on 2009-02-18 18:05:52 as along with 1 person and 1 group sobolevnrm baker-group
	Systematic Coarse-graining of a Multicomponent Lipid Bilayer [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Lanyuan Lu, Gregory Voth posted to coarse-grain membrane membrane-forcefield by agrossfield on 2009-02-16 18:16:34 as along with 2 people and 1 group sobolevnrm tomweingarten baker-group
	Computer Simulations of Vesicle Fission Induced by External Amphipathic Inclusions [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 4. (29 January 2009), pp. 1048-1057. by Kai Yang, Yu-Qiang Ma posted to coarse-grain dpd fission by agrossfield on 2009-01-26 13:23:21 as along with 1 person and 1 group sobolevnrm baker-group
	Membrane-Protein Interactions in a Generic Coarse-Grained Model for Lipid Bilayers [My Copy] Biophysical Journal, Vol. 96 (2009), pp. 101-115. by Beate West, Frank L. H. Brown, Friederike Schmid posted to coarse-grain implicit-membrane lipid-protein-interactions by agrossfield on 2009-01-09 21:31:29 as
	Spontaneous Formation of a Barrel-Stave Pore in a Coarse-Grained Model of the Synthetic LS3 Peptide and a DPPC Lipid Bilayer [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by P. Gkeka, L. Sarkisov posted to antimicrobial-peptide coarse-grain by agrossfield on 2009-01-06 21:14:31 as along with 1 person and 1 group sobolevnrm baker-group
	Coarse-Grained Molecular Dynamics Study of Cyclic Peptide Nanotube Insertion into a Lipid Bilayer† [My Copy] The Journal of Physical Chemistry A, Vol. 0, No. 0. (0000) by Hyonseok Hwang, George C. Schatz, Mark A. Ratner posted to antimicrobial-peptide coarse-grain by agrossfield on 2008-12-22 16:12:23 as along with 1 person paulschlesinger
	The molecular face of lipid rafts in model membranes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 45. (2008), pp. 17367-17372. by Jelger H. Risselada, Siewert J. Marrink posted to cholesterol coarse-grain rafts by agrossfield on 2008-12-15 13:15:46 as
	A Systematic Methodology for Defining Coarse-Grained Sites in Large Biomolecules [My Copy] Biophysical Journal, Vol. 95, No. 11. (01 December 2008), pp. 5073-5083. by Z. Zhang, L. Lu, W. Noid, V. Krishna, J. Pfaendtner, G. Voth posted to coarse-grain by agrossfield on 2008-11-19 14:56:24 as along with 5 people and 2 groups okapi barry sobolevnrm choonpeng paulschlesinger structural_bioinformatics McCammon
	Toward a Coarse-Grained Protein Model Coupled with a Coarse-Grained Solvent Model: Solvation Free Energies of Amino Acid Side Chains [My Copy] Journal of Chemical Theory and Computation, Vol. 4, No. 11. (11 November 2008), pp. 1891-1901. by Wei Han, Cheuk-Kin Wan, Yun-Dong Wu posted to coarse-grain by agrossfield on 2008-11-14 02:54:38 as along with 3 people sunrise rbaron middledomain
	Coarse-Grained Simulation Studies of Peptide-Induced Pore Formation☆ [My Copy] Biophysical Journal, Vol. 95, No. 9. (01 November 2008), pp. 4163-4173. by G. Illya, M. Deserno posted to coarse-grain lipid-protein-interactions by agrossfield on 2008-10-21 15:35:00 as along with 2 people edws paulschlesinger
	Coarse-Grained Molecular Dynamics Simulations of the Energetics of Helix Insertion into a Lipid Bilayer [My Copy] Biochemistry (2 October 2008) by Peter J. Bond, Chze L. Wee, Mark S. Sansom posted to coarse-grain lipid-protein-interactions by agrossfield on 2008-10-21 15:34:03 as along with 3 people and 1 group sobolevnrm paulschlesinger sunhwan baker-group
	A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (1 October 2008) by Mingyang Lu, Jianpeng Ma posted to coarse-grain network-model by agrossfield on 2008-10-10 16:57:35 as along with 6 people and 5 groups sobolevnrm aqeel apaydin ruvido skoddet barry baker-group Nielsen group structural_bioinformatics McCammon Bioinformatics
	Peptide Folding Using Multiscale Coarse-Grained Models [My Copy] J. Phys. Chem. B (20 September 2008) by Ian F. Thorpe, Jian Zhou, Gregory A. Voth posted to coarse-grain protein-folding by agrossfield on 2008-10-10 16:49:32 as along with 3 people A_Coletta_Thesis middledomain paulschlesinger
	Helix−Helix Interactions in Membrane Proteins: Coarse-Grained Simulations of Glycophorin A Helix Dimerization† [My Copy] Biochemistry, Vol. 47, No. 40. (7 October 2008), pp. 10503-10512. by Emi Psachoulia, Philip W. Fowler, Peter J. Bond, Mark S. P. Sansom posted to coarse-grain glycophorin membrane-proteins by agrossfield on 2008-10-01 12:23:20 as along with 3 people jonathancooper choonpeng paulschlesinger
	Lipid Bilayer Curvature and Pore Formation Induced by Charged Linear Polymers and Dendrimers: The Effect of Molecular Shape [My Copy] J. Phys. Chem. B (4 September 2008) by Hwankyu Lee, Ronald G. Larson posted to antimicrobial-peptide coarse-grain dendrite membrane by agrossfield on 2008-09-27 18:09:37 as along with 1 person paulschlesinger
	Coarse-Grained Simulations of the Membrane-Active Antimicrobial Peptide Maculatin 1.1 [My Copy] Biophys. J. (18 July 2008), biophysj.108.128686. by Peter J. Bond, Daniel L. Parton, James F. Clark, Mark S. Sansom posted to antimicrobial-peptide coarse-grain by agrossfield on 2008-09-25 13:38:33 as along with 2 people mikaellund paulschlesinger
	Simulations of the protein folding process using topology-based models depend on the experimental structure [My Copy] The Journal of Chemical Physics, Vol. 129, No. 11. (2008) by Lidia Prieto, Antonio Rey posted to coarse-grain by agrossfield on 2008-09-24 17:57:26 as
	Reconstructing atomistic detail for coarse-grained models with resolution exchange [My Copy] The Journal of Chemical Physics, Vol. 129, No. 11. (2008) by Pu Liu, Qiang Shi, Edward Lyman, Gregory A. Voth posted to coarse-grain by agrossfield on 2008-09-24 17:56:06 as along with 1 person sunhwan
	The molecular mechanism of lipid monolayer collapse [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 31. (5 August 2008), pp. 10803-10808. by Svetlana Baoukina, Luca Monticelli, H. Jelger Risselada, Siewert J. Marrink, D. Peter Tieleman posted to coarse-grain membrane by agrossfield on 2008-09-06 22:18:32 as along with 3 people tboats priyaps loison
	Modeling Self-Assembly Processes Driven by Nonbonded Interactions in Soft Materials† [My Copy] The Journal of Physical Chemistry B, Vol. 112, No. 34. (28 August 2008), pp. 10388-10398. by Martin McCullagh, Tatiana Prytkova, Stefano Tonzani, Nicolas D. Winter, George C. Schatz posted to coarse-grain implicit-membrane implicit-solvent by agrossfield on 2008-08-21 20:11:48 as along with 1 person qshao

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antimicrobial-peptide	82
coarse-grain	54
free-energy	28
membrane	24
ion-solvation	23
nmr	20
lipid-protein-interactions	20
membrane-proteins	19
membrane-electrostatics	18
rhodopsin	17
gpcr	16
implicit-membrane	16
pca	15
lipopeptide	11
rafts	11
replica-exchange	11
network-model	9
implicit-solvent	9
protein-folding	8
membrane-forcefield	8
pmf	6
jarzynski	6
forcefield	6
ion-channel	6
internal-water	6
electrostatics	5
ligand-binding	5
b2ar	5
wham	4
pepducin	4
waxs	4
scattering	4
lipid-curvature	4
me	4
integrator	3
amyloid	3
alamethicin	3
thermostats	3
phosphorus	3
defensin	3
solvation	3
langevin	3
membrane-theory	3
membrane-fusion	3
peptide	2
grand_canonical_ensemble	2
detergent	2
beta-adrenergic	2
isotropic-periodic-sum	2
magainin	2
cholesterol	2
protein-hydration	2
md	2
convergence	2
pores	2
protegrin	2
water	2
path-sampling	2
error-analysis	2
dpd	2
bacteriorhodopsin	2
glycophorin	2
multiscale	2
salt	2
enhanced-sampling	2
lattice	2
polarizability	2
crowding	1
modeling-software	1
lambda-dynamics	1
cecropin	1
allostery	1
helfrich	1
hydration	1
unsaturated	1
pore_size	1
pengyu	1
superposition	1
pore_formation	1
hiv_virus	1
src	1
virus	1
charge	1
dipole-lattice	1
porin	1
vesicles	1
field-theory	1
nmr_spectroscopy	1
demixing	1
micelles	1
finite-size-effect	1
hemagglutinin	1
barrel-stave	1
polyunsaturated_fatty_acids	1
fission	1
ras	1
dendrite	1
colicin	1
nuclear_magnetic_resonance	1
lipid_bilayer	1
clustering	1
drug-development	1
fluoresence	1
error_distribution	1
flu	1
dye	1
dimers	1
ewald	1
umbrella-sampling	1
generalized-born	1
gay-berne	1
voltage_sensors	1
pressure-profile	1
neutron_diffraction	1
bicelles	1
hydrophobic-mismatch	1
polymer	1
lipid_membrane	1
prediction	1
structure	1
molecular_dynamics_simulations	1
fabp	1
walp	1
antibiotic-resistance	1
osmolytes	1
normal-modes	1
multiple-time-step	1
cryomicroscopy	1
inherent-structure	1
structure-prediction	1
shaw	1
fluorination	1
nanotube	1
simulation	1
ions	1
hydrophobicity-scale	1
hiv	1
methods	1
markov	1
g_protein_coupled_receptor	1
rigid-body	1
potassium_channel	1
sevi	1
steered-md	1
flip-flop	1

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