agrossfield's network-model [10 articles] Export

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	Modeling G protein-coupled receptors for structure-based drug discovery using low-frequency normal modes for refinement of homology models: Application to H3 antagonists [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 78, No. 2. (12 August 2010), pp. 457-473. by Brajesh K. Rai, Gregory J. Tawa, Alan H. Katz, Christine Humblet posted to network-model gpcr by agrossfield on 2009-12-05 19:59:45 as along with 1 person xdeupi
	The subspace iteration method in protein normal mode analysis [My Copy] Journal of Computational Chemistry, Vol. 31, No. 1. (2010), pp. 66-74. by Reza S. Sedeh, Mark Bathe, Klaus-Jürgen Bathe posted to pca normal-modes network-model by agrossfield on 2009-11-24 13:58:52 as along with 1 person and 1 group sobolevnrm baker-group
	Bend-twist-stretch model for coarse elastic network simulation of biomolecular motion [My Copy] The Journal of Chemical Physics, Vol. 131, No. 7. (2009), 074112. by Joseph N. Stember, Willy Wriggers posted to network-model by agrossfield on 2009-08-22 13:35:30 as along with 2 people anuragsethi sobolevnrm
	Focused Functional Dynamics of Supramolecules by Use of a Mixed-Resolution Elastic Network Model [My Copy] Vol. 97, No. 4. (19 August 2009), pp. 1178-1187. by Ozge Kurkcuoglu, Osman T. Turgut, Sertan Cansu, Robert L. Jernigan, Pemra Doruker posted to network-model coarse-grain by agrossfield on 2009-08-18 20:49:20 as
	Global distribution of conformational states derived from redundant models in the PDB points to non-uniqueness of the protein structure [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 26. (2009), pp. 10505-10510. by Prasad V. Burra, Ying Zhang, Adam Godzik, Boguslaw Stec posted to network-model by agrossfield on 2009-08-03 17:25:37 as
	Calculation of Free-Energy Differences by Confinement Simulations. Application to Peptide Conformers [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 29. (23 July 2009), pp. 9728-9740. by M. Cecchini, S. V. Krivov, M. Spichty, M. Karplus posted to free-energy network-model by agrossfield on 2009-07-17 21:49:00 as along with 1 person carlosjavierna
	Temperature Dependence of Normal Mode Reconstructions of Protein Dynamics [My Copy] Physical Review Letters, Vol. 102, No. 21. (2009), 218104. by Francesco Piazza, Paolo, Fabio Cecconi posted to network-model by agrossfield on 2009-06-16 18:09:49 as along with 6 people and 1 group abovell dchen paulschlesinger cecconi_fabio Diego_Prada kdesmond2 smc-infm
	Statistical thermodynamics of residue fluctuations in native proteins [My Copy] The Journal of Chemical Physics, Vol. 130, No. 9. (2009), 095103. by Osman N. Yogurtcu, Mert Gur, Burak Erman posted to network-model by agrossfield on 2009-04-09 15:39:08 as along with 1 person and 1 group sobolevnrm baker-group
	Vibrational subsystem analysis: A method for probing free energies and correlations in the harmonic limit [My Copy] The Journal of Chemical Physics, Vol. 129, No. 21. (2008) by Lee H. Woodcock, Wenjun Zheng, An Ghysels, Yihan Shao, Jing Kong, Bernard R. Brooks posted to network-model pca by agrossfield on 2008-12-09 21:33:38 as along with 1 person tovrstra
	A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (1 October 2008) by Mingyang Lu, Jianpeng Ma posted to coarse-grain network-model by agrossfield on 2008-10-10 16:57:35 as along with 6 people and 5 groups sobolevnrm aqeel apaydin ruvido skoddet barry baker-group Nielsen group structural_bioinformatics McCammon Bioinformatics

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antimicrobial-peptide	82
coarse-grain	54
free-energy	30
membrane	24
ion-solvation	23
nmr	20
lipid-protein-interactions	20
gpcr	19
membrane-proteins	19
membrane-electrostatics	18
rhodopsin	17
implicit-membrane	16
pca	15
replica-exchange	12
rafts	11
lipopeptide	11
network-model	10
implicit-solvent	9
membrane-forcefield	8
protein-folding	8
internal-water	6
pmf	6
forcefield	6
jarzynski	6
ion-channel	6
ligand-binding	5
b2ar	5
electrostatics	5
pepducin	4
me	4
lipid-curvature	4
scattering	4
wham	4
waxs	4
solvation	3
amyloid	3
enhanced-sampling	3
langevin	3
membrane-fusion	3
defensin	3
membrane-theory	3
phosphorus	3
integrator	3
thermostats	3
alamethicin	3
water	2
grand_canonical_ensemble	2
detergent	2
beta-adrenergic	2
isotropic-periodic-sum	2
magainin	2
cholesterol	2
protein-hydration	2
md	2
convergence	2
pores	2
protegrin	2
peptide	2
path-sampling	2
error-analysis	2
dpd	2
bacteriorhodopsin	2
glycophorin	2
multiscale	2
salt	2
lattice	2
polarizability	2
steered-md	1
flip-flop	1
allostery	1
modeling-software	1
lambda-dynamics	1
cecropin	1
unsaturated	1
helfrich	1
hydration	1
superposition	1
pore_size	1
pengyu	1
src	1
pore_formation	1
hiv_virus	1
charge	1
virus	1
dipole-lattice	1
porin	1
vesicles	1
field-theory	1
nmr_spectroscopy	1
micelles	1
demixing	1
hemagglutinin	1
finite-size-effect	1
loop-modeling	1
barrel-stave	1
monte_carlo_method	1
polyunsaturated_fatty_acids	1
ras	1
dendrite	1
colicin	1
fission	1
lipid_bilayer	1
error_distribution	1
drug-development	1
fluoresence	1
umbrella-sampling	1
flu	1
dye	1
dimers	1
ewald	1
markov	1
generalized-born	1
bicelles	1
voltage_sensors	1
nuclear_magnetic_resonance	1
pressure-profile	1
hydrophobic-mismatch	1
structure	1
polymer	1
lipid_membrane	1
neutron_diffraction	1
fabp	1
molecular_dynamics_simulations	1
walp	1
multiple-time-step	1
antibiotic-resistance	1
osmolytes	1
normal-modes	1
gay-berne	1
cryomicroscopy	1
inherent-structure	1
prediction	1
structure-prediction	1
shaw	1
hydrophobicity-scale	1
fluorination	1
nanotube	1
simulation	1
methods	1
rigid-body	1
hiv	1
ions	1
clustering	1
g_protein_coupled_receptor	1
sevi	1
potassium_channel	1
crowding	1

agrossfield's network-model [10 articles] Export

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