agrossfield's pca [15 articles] Export

Recent papers added to agrossfield's library classified by the tag pca. You can also see everyone's pca.

	The subspace iteration method in protein normal mode analysis [My Copy] Journal of Computational Chemistry, Vol. 31, No. 1. (2010), pp. 66-74. by Reza S. Sedeh, Mark Bathe, Klaus-Jürgen Bathe posted to pca normal-modes network-model by agrossfield on 2009-11-24 13:58:52 as along with 1 person and 1 group sobolevnrm baker-group
	Collective Dynamics of Periplasmic Glutamine Binding Protein upon Domain Closure [My Copy] Vol. 97, No. 9. (4 November 2009), pp. 2541-2549. by Hannes H. Loeffler, Akio Kitao posted to pca by agrossfield on 2009-11-04 02:00:22 as along with 1 person Diego_Prada
	Extracting the Causality of Correlated Motions from Molecular Dynamics Simulations [My Copy] Vol. 97, No. 6. (16 September 2009), pp. 1747-1755. by Hiqmet Kamberaj, Arjan van der Vaart posted to pca by agrossfield on 2009-09-15 21:44:19 as along with 1 person oteri
	How Adequate are One- and Two-Dimensional Free Energy Landscapes for Protein Folding Dynamics? [My Copy] Physical Review Letters, Vol. 102, No. 23. (2009), 238102. by Gia G. Maisuradze, Adam Liwo, Harold A. Scheraga posted to pca protein-folding by agrossfield on 2009-07-07 13:07:34 as along with 1 person Diego_Prada
	Approximate normal mode analysis based on vibrational subsystem analysis with high accuracy and efficiency [My Copy] The Journal of Chemical Physics, Vol. 130, No. 19. (2009), 194111. by Jeffrey Hafner, Wenjun Zheng posted to pca by agrossfield on 2009-05-22 12:26:07 as along with 1 person dlimmer
	Computational Methods for Predicting Sites of Functionally Important Dynamics [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Adam D. Schuyler, Heather A. Carlson, Eva L. Feldman posted to pca by agrossfield on 2009-05-11 19:57:58 as along with 5 people and 1 group skywalkerus02 ubcg08l higueruelo barry sobolevnrm baker-group
	Multidimensional Langevin modeling of biomolecular dynamics [My Copy] Journal of Chemical Physics, Vol. 130 (2009), pp. 034106-034106-9. by Rainer Hegger, Gerhard Stock posted to langevin pca by agrossfield on 2009-02-18 18:08:09 as
	Analysis of Helix-Helix Interactions of Bacteriorhodopsin by Replica-Exchange Simulations [My Copy] Biophysical Journal, Vol. 96, No. 3. (2009), pp. 765-776. by Hironori Kokubo, Yuko Okamoto posted to bacteriorhodopsin membrane-proteins pca replica-exchange by agrossfield on 2009-02-09 11:44:18 as
	Probing the Local Dynamics of Nucleotide-Binding Pocket Coupled to the Global Dynamics: Myosin versus Kinesin [My Copy] Biophysical Journal, Vol. 89, No. 167. (2005), pp. 167-178. by Wenjun Zheng, Bernard R. Brooks posted to pca by agrossfield on 2009-01-19 15:33:36 as
	Normal-Modes-Based Prediction of Protein Conformational Changes Guided by Distance Constraints [My Copy] Biophysical Journal, Vol. 88, No. 5. (2005), pp. 3109-3117. by Wenjun Zheng, Bernard R. Brooks posted to pca by agrossfield on 2009-01-19 15:30:57 as
	Efficient evaluation of sampling quality of molecular dynamics simulations by clustering of dihedral torsion angles and Sammon mapping [My Copy] Journal of Computational Chemistry, Vol. 30, No. 3. (2009), pp. 479-492. by Stephan Frickenhaus, Srinivasaraghavan Kannan, Martin Zacharias posted to clustering pca by agrossfield on 2009-01-09 18:32:21 as along with 3 people and 1 group Diego_Prada scampos sobolevnrm baker-group
	Vibrational subsystem analysis: A method for probing free energies and correlations in the harmonic limit [My Copy] The Journal of Chemical Physics, Vol. 129, No. 21. (2008) by Lee H. Woodcock, Wenjun Zheng, An Ghysels, Yihan Shao, Jing Kong, Bernard R. Brooks posted to network-model pca by agrossfield on 2008-12-09 21:33:38 as along with 1 person tovrstra
	Protein Folding Pathways Revealed by Essential Dynamics Sampling [My Copy] J. Chem. Theory Comput., Vol. 4, No. 11. (11 November 2008), pp. 1940-1948. by Daniele Narzi, Isabella Daidone, Andrea Amadei, Alfredo Di Nola posted to pca protein-folding by agrossfield on 2008-11-14 02:53:59 as
	Coarse-Graining Protein Structures With Local Multivariate Features from Molecular Dynamics [My Copy] Journal of Physical Chemistry B, Vol. 112, No. 44. (2008), pp. 14026-14035. by Zhiyong Zhang, Willy Wriggers posted to convergence pca by agrossfield on 2008-10-30 19:22:39 as
	Construction of the free energy landscape of biomolecules via dihedral angle principal component analysis [My Copy] The Journal of Chemical Physics, Vol. 128, No. 24. (2008) by Alexandros Altis, Moritz Otten, Phuong H. Nguyen, Rainer Hegger, Gerhard Stock posted to pca by agrossfield on 2008-06-30 22:56:11 as along with 2 people Diego_Prada scampos

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antimicrobial-peptide	82
coarse-grain	54
free-energy	28
membrane	24
ion-solvation	23
nmr	20
lipid-protein-interactions	20
membrane-proteins	19
membrane-electrostatics	18
rhodopsin	17
gpcr	16
implicit-membrane	16
pca	15
lipopeptide	11
rafts	11
replica-exchange	11
network-model	9
implicit-solvent	9
protein-folding	8
membrane-forcefield	8
pmf	6
jarzynski	6
forcefield	6
ion-channel	6
internal-water	6
electrostatics	5
ligand-binding	5
b2ar	5
wham	4
pepducin	4
waxs	4
scattering	4
lipid-curvature	4
me	4
integrator	3
amyloid	3
alamethicin	3
thermostats	3
phosphorus	3
defensin	3
solvation	3
langevin	3
membrane-theory	3
membrane-fusion	3
peptide	2
grand_canonical_ensemble	2
detergent	2
beta-adrenergic	2
isotropic-periodic-sum	2
magainin	2
cholesterol	2
protein-hydration	2
md	2
convergence	2
pores	2
protegrin	2
water	2
path-sampling	2
error-analysis	2
dpd	2
bacteriorhodopsin	2
glycophorin	2
multiscale	2
salt	2
enhanced-sampling	2
lattice	2
polarizability	2
crowding	1
modeling-software	1
lambda-dynamics	1
cecropin	1
allostery	1
helfrich	1
hydration	1
unsaturated	1
pore_size	1
pengyu	1
superposition	1
pore_formation	1
hiv_virus	1
src	1
virus	1
charge	1
dipole-lattice	1
porin	1
vesicles	1
field-theory	1
nmr_spectroscopy	1
demixing	1
micelles	1
finite-size-effect	1
hemagglutinin	1
barrel-stave	1
polyunsaturated_fatty_acids	1
fission	1
ras	1
dendrite	1
colicin	1
nuclear_magnetic_resonance	1
lipid_bilayer	1
clustering	1
drug-development	1
fluoresence	1
error_distribution	1
flu	1
dye	1
dimers	1
ewald	1
umbrella-sampling	1
generalized-born	1
gay-berne	1
voltage_sensors	1
pressure-profile	1
neutron_diffraction	1
bicelles	1
hydrophobic-mismatch	1
polymer	1
lipid_membrane	1
prediction	1
structure	1
molecular_dynamics_simulations	1
fabp	1
walp	1
antibiotic-resistance	1
osmolytes	1
normal-modes	1
multiple-time-step	1
cryomicroscopy	1
inherent-structure	1
structure-prediction	1
shaw	1
fluorination	1
nanotube	1
simulation	1
ions	1
hydrophobicity-scale	1
hiv	1
methods	1
markov	1
g_protein_coupled_receptor	1
rigid-body	1
potassium_channel	1
sevi	1
steered-md	1
flip-flop	1

agrossfield's pca [15 articles] Export

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