agrossfield's replica-exchange [11 articles] Export

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	A soft-core Gay--Berne model for the simulation of liquid crystals by Hamiltonian replica exchange [My Copy] The Journal of Chemical Physics, Vol. 131, No. 17. (2009), 174107. by Roberto Berardi, Claudio Zannoni, Juho S. Lintuvuori, Mark R. Wilson posted to replica-exchange coarse-grain by agrossfield on 2009-11-06 20:34:51 as
	Error and efficiency of replica exchange molecular dynamics simulations [My Copy] The Journal of Chemical Physics, Vol. 131, No. 16. (2009), 165102. by Edina Rosta, Gerhard Hummer posted to replica-exchange by agrossfield on 2009-10-30 19:21:06 as
	Simulation of the effects of chain architecture on the sorption of ethylene in polyethylene [My Copy] The Journal of Chemical Physics, Vol. 120, No. 23. (2004), pp. 11304-11315. by Brian J. Banaszak, Roland Faller, Juan J. de Pablo posted to replica-exchange by agrossfield on 2009-10-26 19:18:59 as
	Replica exchange with nonequilibrium switches [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 30. (28 July 2009), pp. 12224-12229. by Andrew J. Ballard, Christopher Jarzynski posted to jarzynski replica-exchange by agrossfield on 2009-08-01 17:33:13 as along with 2 people pmung joshBerryman
	Demixing Transition of the Aqueous Solution of Amyloidogenic Peptides: A REMD Simulation Study [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 29. (23 July 2009), pp. 9863-9870. by Gurpreet Singh, Ivan Brovchenko, Alla Oleinikova, Roland Winter posted to amyloid demixing replica-exchange by agrossfield on 2009-07-17 21:47:02 as
	Multidimensional generalized-ensemble algorithms for complex systems [My Copy] The Journal of Chemical Physics, Vol. 130, No. 21. (2009), 214105. by Ayori Mitsutake, Yuko Okamoto posted to replica-exchange by agrossfield on 2009-06-08 20:34:18 as along with 1 person dlimmer
	An optimized replica exchange molecular dynamics method [My Copy] The Journal of Chemical Physics, Vol. 130, No. 7. (2009) by Hiqmet Kamberaj, Arjan van der Vaart posted to replica-exchange by agrossfield on 2009-02-21 00:13:46 as along with 1 person dlimmer
	Analysis of Helix-Helix Interactions of Bacteriorhodopsin by Replica-Exchange Simulations [My Copy] Biophysical Journal, Vol. 96, No. 3. (2009), pp. 765-776. by Hironori Kokubo, Yuko Okamoto posted to bacteriorhodopsin membrane-proteins pca replica-exchange by agrossfield on 2009-02-09 11:44:18 as
	Free-Energy Profiles of Membrane Insertion of the M2 Transmembrane Peptide from Influenza A Virus [My Copy] Biophys. J., Vol. 95, No. 11. (1 December 2008), pp. 5021-5029. by In-Chul Yeh, Mark A. Olson, Michael S. Lee, Anders Wallqvist posted to free-energy implicit-membrane lipid-protein-interactions replica-exchange by agrossfield on 2008-11-19 14:24:19 as along with 1 person paulschlesinger
	Optimization of expanded ensemble methods [My Copy] The Journal of Chemical Physics, Vol. 129, No. 15. (2008) by Fernando A. Escobedo, Francisco posted to replica-exchange by agrossfield on 2008-10-22 14:06:10 as
	How Efficient Is Replica Exchange Molecular Dynamics? An Analytic Approach [My Copy] J. Chem. Theory Comput., Vol. 4, No. 4. (8 April 2008), pp. 626-636. by Hugh Nymeyer posted to replica-exchange by agrossfield on 2008-04-09 13:22:59 as along with 3 people and 3 groups sobolevnrm loison barry baker-group structural_bioinformatics McCammon

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antimicrobial-peptide	82
coarse-grain	54
free-energy	28
membrane	24
ion-solvation	23
nmr	20
lipid-protein-interactions	20
membrane-proteins	19
gpcr	18
membrane-electrostatics	18
rhodopsin	17
implicit-membrane	16
pca	15
lipopeptide	11
rafts	11
replica-exchange	11
network-model	10
implicit-solvent	9
membrane-forcefield	8
protein-folding	8
pmf	6
forcefield	6
internal-water	6
jarzynski	6
ion-channel	6
electrostatics	5
b2ar	5
ligand-binding	5
pepducin	4
me	4
scattering	4
lipid-curvature	4
wham	4
waxs	4
solvation	3
phosphorus	3
membrane-fusion	3
langevin	3
defensin	3
membrane-theory	3
integrator	3
amyloid	3
thermostats	3
alamethicin	3
grand_canonical_ensemble	2
peptide	2
detergent	2
beta-adrenergic	2
isotropic-periodic-sum	2
magainin	2
cholesterol	2
protein-hydration	2
md	2
convergence	2
pores	2
protegrin	2
water	2
path-sampling	2
error-analysis	2
dpd	2
bacteriorhodopsin	2
glycophorin	2
multiscale	2
salt	2
enhanced-sampling	2
lattice	2
polarizability	2
flip-flop	1
allostery	1
modeling-software	1
lambda-dynamics	1
cecropin	1
unsaturated	1
helfrich	1
hydration	1
superposition	1
pore_size	1
pengyu	1
src	1
pore_formation	1
hiv_virus	1
charge	1
virus	1
dipole-lattice	1
porin	1
vesicles	1
field-theory	1
nmr_spectroscopy	1
micelles	1
demixing	1
hemagglutinin	1
finite-size-effect	1
loop-modeling	1
barrel-stave	1
polyunsaturated_fatty_acids	1
fission	1
ras	1
dendrite	1
colicin	1
nuclear_magnetic_resonance	1
lipid_bilayer	1
clustering	1
drug-development	1
fluoresence	1
error_distribution	1
flu	1
dye	1
dimers	1
ewald	1
umbrella-sampling	1
generalized-born	1
gay-berne	1
voltage_sensors	1
pressure-profile	1
neutron_diffraction	1
bicelles	1
hydrophobic-mismatch	1
polymer	1
lipid_membrane	1
prediction	1
structure	1
molecular_dynamics_simulations	1
fabp	1
walp	1
antibiotic-resistance	1
osmolytes	1
normal-modes	1
multiple-time-step	1
cryomicroscopy	1
inherent-structure	1
structure-prediction	1
shaw	1
hydrophobicity-scale	1
fluorination	1
nanotube	1
simulation	1
ions	1
rigid-body	1
hiv	1
methods	1
markov	1
g_protein_coupled_receptor	1
sevi	1
potassium_channel	1
crowding	1
steered-md	1

agrossfield's replica-exchange [11 articles] Export

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