aheilbut's library 93 articles Export

	SeqAn an efficient, generic C++ library for sequence analysis. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Andreas Döring, David Weese, Tobias Rausch, Knut Reinert posted to sequenceanalysis algorithms by aheilbut on 2009-11-20 23:00:45 as along with 16 people MarcelSchulz n00c druvus mmartin dquest daforerog groepl guhjy chad_davis laughcry ryanraaum nklee barriot mailund magusina reyez
	BioDrugScreen: a computational drug design resource for ranking molecules docked to the human proteome [My Copy] Nucl. Acids Res. (18 November 2009), gkp852. by Liwei Li, Khuchtumur Bum-Erdene, Peter H. Baenziger, et al.Joshua J. Rosen, Jamison R. Hemmert, Joy A. Nellis, Marlon E. Pierce, Samy O. Meroueh posted to docking computationalchemistry by aheilbut on 2009-11-20 21:35:50 as
	High-throughput sequence alignment using Graphics Processing Units [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007), 474. by Michael Schatz, Cole Trapnell, Arthur Delcher, Amitabh Varshney posted to suffixtree mummer gpu by aheilbut on 2009-11-07 21:51:06 as along with 20 people and 3 groups cthachuk druvus polivares naoya n00c natstreet rschulz operon orzenil Yanno guhjy sephy lusk laughcry nedwards mdimon cndewey heliopais urgi tpreeprem BergmanLab KCL & UCL Bioinformatics gatech-compgenomics
	An Eulerian path approach to DNA fragment assembly. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 17. (14 August 2001), pp. 9748-9753. by P. A. Pevzner, H. Tang, M. S. Waterman posted to sequencing assembly algorithms by aheilbut on 2009-11-07 19:10:27 as along with 14 people and 2 groups jengeldk n00c robsyme Neeperando idoerg dakelley brl A_Olympia briann jmeppley AaronDarling nedwards azazello jwhitney Philosophy_of_Information Blog_and_Wiki_Research
	Streaming Algorithms for Biological Sequence Alignment on GPUs [My Copy] IEEE Transactions on Parallel and Distributed Systems, Vol. 18, No. 9. (2007), pp. 1270-1281. by Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang M. Wittig posted to gpu alignment by aheilbut on 2009-10-18 22:21:27 as
	Perspectives on the computer revolution [My Copy] (1989) by Zenon W. Pylyshyn, Liam Bannon posted to history computers by aheilbut on 2009-10-13 00:12:27 as
	Mining market data: A network approach [My Copy] Computers & Operations Research In Part Special Issue: Operations Research and Data Mining, Vol. 33, No. 11. (November 2006), pp. 3171-3184. by V. Boginski, S. Butenko, P. Pardalos posted to networks markets dynamic correlation by aheilbut on 2009-10-09 22:22:44 as along with 1 person elsantosneto
	In Silico Elucidation of the Molecular Mechanism Defining the Adverse Effect of Selective Estrogen Receptor Modulators [My Copy] PLoS Comput Biol, Vol. 3, No. 11. (30 November 2007), e217. by Lei Xie, Jian Wang, Philip E. Bourne posted to sideeffects docking bourne by aheilbut on 2009-09-03 19:37:46 as along with 1 person apostola
	Quantitative phenotyping via deep barcode sequencing [My Copy] Genome Research, Vol. 19, No. 10. (21 October 2009), pp. 1836-1842. by Andrew M. Smith, Lawrence E. Heisler, Joseph Mellor, et al.Fiona Kaper, Michael J. Thompson, Mark Chee, Frederick P. Roth, Guri Giaever, Corey Nislow posted to sequencing barcode by aheilbut on 2009-08-20 01:09:26 as along with 6 people lp2 druvus antariksh guhjy natstreet jbhiatt
	High-performance hardware implementation of a parallel database search engine for real-time peptide mass fingerprinting [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. 1498-1502. by Istvan A. Bogdan, Jenny Rivers, Robert J. Beynon, Daniel Coca posted to massspec fpga by aheilbut on 2009-08-20 00:19:49 as
	Human Chk1 Expression Is Dispensable for Somatic Cell Death and Critical for Sustaining G2 DNA Damage Checkpoint [My Copy] Molecular Cancer Therapeutics, Vol. 2, No. 6. (June 2003), pp. 543-548. by Zehan Chen, Zhan Xiao, Jun Chen, et al.Shi-Chung Ng, Thomas Sowin, Hing Sham, Saul Rosenberg, Steve Fesik, Haiying Zhang posted to chk1 dde by aheilbut on 2009-06-23 23:38:18 as
	Chk1 Mediates S and G2 Arrests through Cdc25A Degradation in Response to DNA-damaging Agents [My Copy] J. Biol. Chem., Vol. 278, No. 24. (6 June 2003), pp. 21767-21773. by Zhan Xiao, Zehan Chen, Angelo H. Gunasekera, et al.Thomas J. Sowin, Saul H. Rosenberg, Steve Fesik, Haiying Zhang posted to chk1 dde dnadamage by aheilbut on 2009-06-23 23:32:05 as along with 1 person DNAReplication
	Drug interactions and the evolution of antibiotic resistance [My Copy] Nat Rev Micro, Vol. 7, No. 6. (June 2009), pp. 460-466. by Pamela J. Yeh, Matthew J. Hegreness, Aviva P. Aiden, Roy Kishony posted to antagonism drugdrug evolution review synergy by aheilbut on 2009-06-23 18:44:24 as along with 4 people mingzhi nelfarargy sandfire gwenknight
	Data-Based Identifiability Analysis of Nonlinear Dynamical Models. [My Copy] Bioinformatics (28 July 2007) by Hengl S, Kreutz C, Timmer J, Maiwald T posted to identifiability reverseengineering by aheilbut on 2009-06-23 02:03:13 as along with 2 people guhjy shigepong
	MIST: Maximum Information Spanning Trees for dimension reduction of biological data sets [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1165-1172. by Bracken M. King, Bruce Tidor posted to algorithms by aheilbut on 2009-06-23 01:42:18 as along with 1 person jfr
	Benchmarks for identification of ordinary differential equations from time series data [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 780-786. by Peter Gennemark, Dag Wedelin posted to algorithms benchmarks reverseengineering by aheilbut on 2009-06-23 01:38:29 as along with 3 people kentz agomez imina
	Rules for modeling signal-transduction systems. [My Copy] Sci STKE, Vol. 2006, No. 344. (17 July 2006) by W. S. Hlavacek, J. R. Faeder, M. L. Blinov, R. G. Posner, M. Hucka, W. Fontana posted to cellucidate modeling plectix simulation by aheilbut on 2009-06-20 21:48:12 as along with 5 people tonamswish jjray wnpx eukfn josepe
	Rule-based modeling of biochemical systems with BioNetGen. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 500 (2009), pp. 113-167. by J. R. Faeder, M. L. Blinov, W. S. Hlavacek posted to abstractions cellucidate modeling plectix by aheilbut on 2009-06-20 21:44:42 as
	Automated high-dimensional flow cytometric data analysis [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 21. (26 May 2009), pp. 8519-8524. by Saumyadipta Pyne, Xinli Hu, Kui Wang, et al.Elizabeth Rossin, Tsung-I Lin, Lisa M. Maier, Clare Baecher-Allan, Geoffrey J. Mclachlan, Pablo Tamayo, David A. Hafler, Philip L. De Jager, Jill P. Mesirov posted to analysis flowcytometry statistics by aheilbut on 2009-06-18 22:08:48 as along with 5 people jfr rdiaz guhjy vplagnol surajitray
	Evolutionary plasticity of genetic interaction networks [My Copy] Nat Genet, Vol. 40, No. 4. (April 2008), pp. 390-391. by Julia Tischler, Ben Lehner, Andrew G. Fraser posted to epistasis evolution genetics plasticity by aheilbut on 2009-06-18 19:38:04 as along with 7 people and 1 group dakelley saket caseybrown smgomez ptrobajo emptyhb zwang GomezLab
	Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks. [My Copy] BMC Syst Biol, Vol. 1 (2007) by A. Hoppe, S. Hoffmann, H. G. Holzhütter posted to fba by aheilbut on 2009-06-08 22:36:53 as along with 4 people schwartzjmc fishtank marcio JeremyZucker
	A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. [My Copy] Molecular systems biology, Vol. 3 (26 June 2007) by Adam M. Feist, Christopher S. Henry, Jennifer L. Reed, et al.Markus Krummenacker, Andrew R. Joyce, Peter D. Karp, Linda J. Broadbelt, Vassily Hatzimanikatis, Bernhard Ø. Palsson posted to fba by aheilbut on 2009-06-08 22:35:54 as along with 7 people winterstream schwartzjmc alexg cjeans hryk michaelbarton JeremyZucker
	Akt/protein kinase B signaling inhibitor-2, a selective small molecule inhibitor of Akt signaling with antitumor activity in cancer cells overexpressing Akt. [My Copy] Cancer Res, Vol. 64, No. 13. (1 July 2004), pp. 4394-4399. by L. Yang, H. C. Dan, M. Sun, et al.Q. Liu, X. M. Sun, R. I. Feldman, A. D. Hamilton, M. Polokoff, S. V. Nicosia, M. Herlyn, S. M. Sebti, J. Q. Cheng posted to akt dde triciribine by aheilbut on 2009-06-08 21:40:28 as along with 1 person Drewes
	Inhibition of AKT survival pathway by a small molecule inhibitor in human endometrial cancer cells [My Copy] Br J Cancer, Vol. 91, No. 10. (26 October 2004), pp. 1808-1812. by X. Jin, D. R. Gossett, S. Wang, et al.D. Yang, Y. Cao, J. Chen, R. Guo, R. K. Reynolds, J. Lin posted to akt api-59cj-ome dde by aheilbut on 2009-06-08 17:33:21 as
	Inhibition of two enzymes in de novo purine nucleotide synthesis by triciribine phosphate (TCN-P). [My Copy] Biochemical pharmacology, Vol. 38, No. 22. (15 November 1989), pp. 4045-4051. by E. C. Moore, R. B. Hurlbert, G. R. Boss, S. P. Massia posted to dde triciribine by aheilbut on 2009-06-08 17:15:17 as
	Community detection in graphs [My Copy] (3 Jun 2009) by Santo Fortunato posted to algorithms clusters graphs networks by aheilbut on 2009-06-04 17:31:00 as along with 15 people mjb ecome AaronMcDaid saket pdlug dpf Bolozna lawraga Kovanen marinari Diego_Prada juhop janpaniev acrmartins deanmalmgren
	Adaptive diffusion kernel learning from biological networks for protein function prediction [My Copy] BMC Bioinformatics, Vol. 9 (25 March 2008), 162. by Liang Sun, Shuiwang Ji, Jieping Ye posted to diffusionkernels machinelearning by aheilbut on 2009-05-14 18:39:12 as along with 5 people ajbattle dragonrez bootsy barriot ptrobajo
	Identification of functional modules using network topology and high-throughput data. [My Copy] BMC systems biology, Vol. 1, No. 1. (2007), 8. by Igor Ulitsky, Ron Shamir posted to algorithms clustering modules networks ronshamir by aheilbut on 2009-04-22 17:42:59 as along with 18 people greg akshayk ptrobajo yaredo isimpson qluo zufar roys frohike tmmurali dragonrez jfr wnpx Ao_Li2007 lyndon bertelsen ellakat carlk
	Ethical Considerations in the Interpretation and Communication of Clinical Trial Results [My Copy] Proc Am Thorac Soc, Vol. 4, No. 2. (1 May 2007), pp. 194-199. by David Coultas posted to clinicaltrials by aheilbut on 2009-03-18 03:33:46 as
	Reporting, access, and transparency: better infrastructure of clinical trials. [My Copy] Critical care medicine, Vol. 37, No. 1 Suppl. (January 2009) by Massimo Antonelli, Giovanna Mercurio posted to transparency by aheilbut on 2009-03-15 22:21:07 as along with 1 person guhjy
	SCIENTIFIC INTEGRITY: Responding to Possible Plagiarism [My Copy] Science, Vol. 323, No. 5919. (6 March 2009), pp. 1293-1294. by Tara C. Long, Mounir Errami, Angela C. George, Zhaohui Sun, Harold R. Garner posted to plagiarism by aheilbut on 2009-03-07 18:05:27 as along with 6 people timflutre daforerog idoerg jobadge silberbauer creswick
	G2 checkpoint abrogation and checkpoint kinase-1 targeting in the treatment of cancer [My Copy] British Journal of Cancer, Vol. aop, No. current. (29 January 2008) by N. Bucher, C. D. Britten posted to cdk1 checkpoint g2 inhibition by aheilbut on 2009-02-20 15:59:21 as along with 1 person renatomilani
	Accelerated evolution of resistance in multidrug environments [My Copy] Proceedings of the National Academy of Sciences (2008) by Matthew Hegreness, Noam Shoresh, Doris Damian, Daniel Hartl, Roy Kishony posted to evolution resistance by aheilbut on 2009-02-14 00:33:06 as along with 3 people gwenknight tmmurali jjray
	Drug interactions modulate the potential for evolution of resistance. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 39. (30 September 2008), pp. 14918-14923. by J. B. Michel, P. J. Yeh, R. Chait, R. C. Moellering, R. Kishony posted to combinations drugdrug evolution by aheilbut on 2009-02-14 00:22:56 as along with 1 person gwenknight
	Judgmental extrapolation and the salience of change [My Copy] Journal of Forecasting, Vol. 9, No. 4. (1990), pp. 347-372. by Paul B. Andreassen, Stephen J. Kraus posted to behaviouralfinance extrapolation psychology salience by aheilbut on 2008-12-01 19:24:49 as
	Models from experiments: combinatorial drug perturbations of cancer cells [My Copy] Molecular Systems Biology, Vol. 4 (02 September 2008) by Sven Nelander, Weiqing Wang, Bjorn Nilsson, et al.Qing-Bai She, Christine Pratilas, Neal Rosen, Peter Gennemark, Chris Sander posted to algorithms combinations mskcc reverseengineering sander by aheilbut on 2008-12-01 19:07:17 as along with 6 people tjchen mingzhi jfr ptrobajo oelemento balabu
	An integrated genomic analysis of human glioblastoma multiforme. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5897. (26 September 2008), pp. 1807-1812. by D. Williams Parsons, Siân Jones, Xiaosong Zhang, et al.Jimmy Cheng-Ho C. Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, I-Mei M. Siu, Gary L. Gallia, Alessandro Olivi, Roger McLendon, B. Ahmed Rasheed, Stephen Keir, Tatiana Nikolskaya, Yuri Nikolsky, Dana A. Busam, Hanna Tekleab, Luis A. Diaz, James Hartigan, Doug R. Smith, Robert L. Strausberg, Suely Kazue Nagahashi K. Marie, Sueli Mieko Oba M. Shinjo, Hai Yan, Gregory J. Riggins, Darell D. Bigner, Rachel Karchin, Nick Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler posted to cancer cancergenetics cancergenome gbm glioblastoma sequencing by aheilbut on 2008-09-07 05:45:14 as along with 15 people and 2 groups VGreiff stubrown Zephyrus zufar dolchan frohike caseybrown wimufi jfr srp33 renatomilani brianb shikin songpku giovenko GeneGo Roswell Cancer Crosstalk
	Inference of Protein Complex Activities from Chemical-Genetic Profile and Its Applications: Predicting Drug-Target Pathways [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000162. by Sangjo Han, Dongsup Kim posted to chemicalgenetic profiling target by aheilbut on 2008-08-30 02:14:03 as along with 3 people guhjy ptrobajo friendpine
	A guide to recurrent neural networks and backpropagation [My Copy] In In the Dallas project, SICS Technical Report T2002:03, SICS (2002) by Mikael Bodén posted to backprop recurrent by aheilbut on 2008-08-05 06:10:19 as along with 1 person rnaylor
	Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network. [My Copy] Genome Res, Vol. 13, No. 11. (November 2003), pp. 2396-2405. by D. E. Zak, G. E. Gonye, J. S. Schwaber, F. J. Doyle posted to reverseengineering by aheilbut on 2008-07-31 06:23:41 as along with 5 people ryang wnpx jrbanga bertelsen lukaswindhager
	Resolution and repeatability of phenotypic assays by automated growth curve analysis in yeast and bacteria [My Copy] Analytical Biochemistry, Vol. 344, No. 1. (1 September 2005), pp. 138-140. by Lukasz Jasnos, Piotr Sliwa, Ryszard Korona posted to plateeffects reproductibility by aheilbut on 2008-07-30 17:29:49 as
	How many drug targets are there? [My Copy] Nature Reviews Drug Discovery, Vol. 5, No. 12., pp. 993-996. by John P. Overington, Bissan Al-Lazikani, Andrew L. Hopkins posted to chemistry pharmacology polypharmacy target by aheilbut on 2008-07-23 23:58:17 as along with 10 people and 1 group BragilMassoud cannin kuhn bicko mingzhi higueruelo srp33 ramensky gemmalholliday ajaymalik libr
	Next-generation DNA sequencing methods. [My Copy] Annual review of genomics and human genetics, Vol. 9, No. 1. (19 June 2008), pp. 387-402. by Elaine R. Mardis posted to review sequencing by aheilbut on 2008-07-23 17:37:05 as along with 15 people rshe heliopais daforerog stsaft natstreet n00c druvus Vincent_Rouilly Annab floatingpoint yupu LorraineThompson giovenko reyez guhjy
	Can we rationally design promiscuous drugs? [My Copy] Current Opinion in Structural Biology, Vol. 16, No. 1. (24 February 2006), pp. 127-136. by A. Hopkins, J. Mason, J. Overington posted to design drugs promiscuity by aheilbut on 2008-07-21 20:59:36 as along with 9 people and 1 group pablocarb pauldobson ubcg08l BragilMassoud apaydin kuhn bicko yongzhao ramensky TSRI_MGL
	Specificity and evolvability in eukaryotic protein interaction networks. [My Copy] PLoS computational biology, Vol. 3, No. 2. (16 February 2007), e25. by Pedro Beltrao, Luis Serrano posted to evolution networks by aheilbut on 2008-07-21 20:56:14 as along with 6 people saket chica kiekyon marti aalibes dylan77
	Evolvability and hierarchy in rewired bacterial gene networks [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845. by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, et al.Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano posted to evolution networks by aheilbut on 2008-07-21 20:55:45 as along with 26 people and 4 groups Asclepius yyfwuhan biomcgary megraw chica jimineep balabu kaarsinogen aalibes tmmurali dullhunk neils cmzmasek AbnerCYH josedavid biehl caseybrown Garamonfok austin hryk dbikard cactus margaritis chad_davis michaelbarton zwang GEB Centre de Recherches Interdisciplinaires SynBioSys BergmanLab
	Quantitative analysis of EGFRvIII cellular signaling networks reveals a combinatorial therapeutic strategy for glioblastoma [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 31. (31 July 2007), pp. 12867-12872. by Paul H. Huang, Akitake Mukasa, Rudy Bonavia, et al.Ryan A. Flynn, Zachary E. Brewer, Webster K. Cavenee, Frank B. Furnari, Forest M. White posted to combinations massspec by aheilbut on 2008-07-21 19:33:40 as along with 1 person cdppublications
	Stimulus Design for Model Selection and Validation in Cell Signaling. [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (15 February 2008) by Joshua F F. Apgar, Jared E E. Toettcher, Drew Endy, Forest M M. White, Bruce Tidor posted to modeling reverseengineering by aheilbut on 2008-07-21 19:32:57 as along with 2 people tinatoni tmmurali
	Drug Target Identification Using Side-Effect Similarity [My Copy] Science, Vol. 321, No. 5886. (11 July 2008), pp. 263-266. by Monica Campillos, Michael Kuhn, Anne-Claude Gavin, Lars J. Jensen, Peer Bork posted to drugs sideeffects by aheilbut on 2008-07-21 02:36:18 as along with 17 people anthropomorphism npt11tpn mitko mingzhi TRHvidsten dullhunk jfr zimbo1 bpcusack jmuhlich larsjuhljensen tmmurali askrajiv reyez roys ajaymalik raiyar
	A large-scale computational approach to drug repositioning. [My Copy] Genome Inform, Vol. 17, No. 2. (2006), pp. 239-247. by Y. Y. Li, J. An, S. J. Jones posted to docking drugs inversedocking by aheilbut on 2008-07-19 17:29:07 as along with 1 person BragilMassoud

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evolution	9
reverseengineering	8
algorithms	7
modeling	6
networks	6
dde	5
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cellucidate	2
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review	2
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ai	1
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vertical	1

aheilbut's library 93 articles Export

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