ahmetbakan's library 32 articles Export

	Antibody Multispecificity Mediated by Conformational Diversity [My Copy] Science, Vol. 299, No. 5611. (28 February 2003), pp. 1362-1367. by Leo C. James, Pietro Roversi, Dan S. Tawfik posted to induced-fit conformational_selection by ahmetbakan on 2009-11-21 21:41:51 as along with 2 people jlh64 benlin
	Conformational selection and induced fit mechanism underlie specificity in noncovalent interactions with ubiquitin [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 46. (17 November 2009), pp. 19346-19351. by Tomasz Wlodarski, Bojan Zagrovic posted to induced-fit conformational_selection by ahmetbakan on 2009-11-20 17:29:10 as
	On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Abdullah Kahraman, Richard J. Morris, Roman A. Laskowski, Angelo D. Favia, Janet M. Thornton posted to no-tag by ahmetbakan on 2009-11-20 17:19:13 as along with 1 person apaydin
	Predicting new molecular targets for known drugs [My Copy] Nature, Vol. 462, No. 7270. (01 November 2009), pp. 175-181. by Michael J. Keiser, Vincent Setola, John J. Irwin, et al.Christian Laggner, Atheir I. Abbas, Sandra J. Hufeisen, Niels H. Jensen, Michael B. Kuijer, Roberto C. Matos, Thuy B. Tran, Ryan Whaley, Richard A. Glennon, Jerome Hert, Kelan L. H. Thomas, Douglas D. Edwards, Brian K. Shoichet, Bryan L. Roth posted to drug_t by ahmetbakan on 2009-11-12 15:33:54 as along with 14 people and 1 group venancio okapi zufar pablocarb zwang TRHvidsten phoenixzxl qshao Yanno mnishimu tmmurali sjcockell seb1 abhishek_tiwari Journal picks
	Simultaneous prediction of protein folding and docking at high resolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18978-18983. by Rhiju Das, Ingemar AndrÃ©, Yang Shen, et al.Yibing Wu, Alexander Lemak, Sonal Bansal, Cheryl H. Arrowsmith, Thomas Szyperski, David Baker posted to no-tag by ahmetbakan on 2009-11-12 15:29:50 as along with 4 people paulschlesinger apaydin ibuch zwang
	Assessing implicit models for nonpolar mean solvation forces: The importance of dispersion and volume terms [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 22. (30 May 2006), pp. 8331-8336. by Jason A. Wagoner, Nathan A. Baker posted to continuum_solvation_models by ahmetbakan on 2009-11-04 04:06:24 as along with 3 people afenley flbarroso rok
	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted to review dynamics by ahmetbakan on 2009-10-29 18:38:55 as along with 20 people and 3 groups dfdong tomhebbron anuragsethi kevinchannon klexa lauresultan dbikard ibuch ramiro2k barry pablocarb ramanuja sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang jdoconnell paulschlesinger structural_bioinformatics McCammon baker-group
	A comparative analysis of the equilibrium dynamics of a designed protein inferred from NMR, X-ray, and computations. [My Copy] Proteins, Vol. 77, No. 4. (December 2009), pp. 927-939. by Lin Liu, Leonardus M. Koharudin, Angela M. Gronenborn, Ivet Bahar posted to pca gnm dynamics by ahmetbakan on 2009-10-29 16:24:44 as along with 2 people sobolevnrm apaydin
	Zebrafish chemical screening reveals an inhibitor of Dusp6 that expands cardiac cell lineages [My Copy] Nature Chemical Biology, Vol. 5, No. 9. (05 July 2009), pp. 680-687. by Gabriela Molina, Andreas Vogt, Ahmet Bakan, et al.Weixiang Dai, Pierre Q. de Oliveira, Wade Znosko, Thomas E. Smithgall, Ivet Bahar, John S. Lazo, Billy W. Day, Michael Tsang posted to mkps allostery by ahmetbakan on 2009-10-22 18:46:37 as
	A Primer on Python for Life Science Researchers [My Copy] PLoS Comput Biol, Vol. 3, No. 11. (30 November 2007), e199. by Sebastian Bassi posted to educational by ahmetbakan on 2009-10-22 18:38:15 as along with 16 people and 2 groups fgibson najwvandijk winterschlaefer eesruiz daforerog scryrps giovenko druvus guhjy Ayest dullhunk sobolevnrm Ema jfr higueruelo dgroth ImagCom - Biomedical Text Computing baker-group
	A novel and efficient tool for locating and characterizing protein cavities and binding sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (11 September 2009), NA. by Ashutosh Tripathi, Glen E. Kellogg posted to cavity_detection by ahmetbakan on 2009-10-22 15:34:15 as along with 2 people nickolay higueruelo
	Intrinsic motions along an enzymatic reaction trajectory. [My Copy] Nature, Vol. 450, No. 7171. (6 December 2007), pp. 838-844. by Katherine A. Henzler-Wildman, Vu Thai, Ming Lei, et al.Maria Ott, Magnus Wolf-Watz, Tim Fenn, Ed Pozharski, Mark A. Wilson, Gregory A. Petsko, Martin Karplus, Christian G. Hübner, Dorothee Kern posted to enzymes enm by ahmetbakan on 2009-10-19 01:51:24 as along with 12 people and 1 group saravan xdeupi ubcg08l ruvido barry aqeel ebeutler cactus sobolevnrm paulschlesinger jlh64 yalexeev baker-group
	Can Conformational Change Be Described by Only a Few Normal Modes? [My Copy] Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1583-1593. by Paula Petrone, Vijay S. Pande posted to nma by ahmetbakan on 2009-10-19 01:49:21 as along with 12 people and 7 groups csrocha BragilMassoud barry dimka aqeel shuns yongzhao xdeupi choonpeng joergkurtwegner daevans LamBras structural_bioinformatics Bioinformatics TSRI_MGL Molecular-Modelling Drug-Design Cheminformatics LabCompMed
	Real Lives and White Lies in the Funding of Scientific Research [My Copy] PLoS Biol, Vol. 7, No. 9. (15 September 2009), e1000197. by Peter A. Lawrence posted to educational by ahmetbakan on 2009-10-19 01:47:34 as along with 45 people and 8 groups sfalsharif Geknitics Horduna tsjipko Zephyrus polivares ubcg08l jago Laurentjp pmcarlton nuin Yanno CulCog barry rodney dmnapolitano Caronte daveGerrard sobolevnrm cyounkin jshigh maren cisevol MurphysLab ArtemPankin ifiokoye jclau reyez lilith ngehlenborg eisdur tnhh antonkratz samjlord Torsten_Holmer ommachi rdiaz druvus Borelli pedromts renatomilani stajich chriswillmott dullhunk ppgardne JLab Convention on Knowledge Commons ePortfolio McCammon BergmanLab Khavkin's lab Mycology Journal picks
	RNase H Active Site Inhibitors of Human Immunodeficiency Virus Type 1 Reverse Transcriptase: Design, Biochemical Activity, and Structural Information [My Copy] Journal of Medicinal Chemistry, Vol. 52, No. 19. (8 October 2009), pp. 5781-5784. by Thorsten A. Kirschberg, Mini Balakrishnan, Neil H. Squires, et al.Tiffany Barnes, Katherine M. Brendza, Xiaowu Chen, Eugene J. Eisenberg, Weili Jin, Nilima Kutty, Stephanie Leavitt, Albert Liclican, Qi Liu, Xiaohong Liu, John Mak, Jason K. Perry, Michael Wang, William J. Watkins, Eric B. Lansdon posted to rnase_h by ahmetbakan on 2009-10-19 01:47:16 as
	Predicting Ligand Binding Affinity with Alchemical Free Energy Methods in a Polar Model Binding Site [My Copy] Journal of Molecular Biology (24 September 2009) by Sarah E. Boyce, David L. Mobley, Gabriel Rocklin, Alan P. Graves, Ken A. Dill, Brian K. Shoichet posted to free_energy binding_affinity by ahmetbakan on 2009-10-19 01:46:38 as
	Ten Simple Rules for Chairing a Scientific Session [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (25 September 2009), e1000517. by Alex Bateman, Philip E. Bourne posted to educational by ahmetbakan on 2009-10-19 01:45:26 as along with 7 people perkeo timflutre Yanno silberbauer daforerog fgibson dullhunk
	Three-Dimensional Pharmacophore Methods in Drug Discovery [My Copy] Journal of Medicinal Chemistry, Vol. 0, No. 0. (0000) by Andrew R. Leach, Valerie J. Gillet, Richard A. Lewis, Robin Taylor posted to pharmacophore by ahmetbakan on 2009-10-19 01:44:42 as
	The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 34. (25 August 2009), pp. 14349-14354. by Ahmet Bakan, Ivet Bahar posted to nma flexibility essential-dynamics enm anm by ahmetbakan on 2009-10-18 19:11:57 as along with 5 people and 1 group apaydin anuragsethi jmccammon okapi boris_aguilar McCammon
	Knowledge-Based Characterization of Similarity Relationships in the Human Protein−Tyrosine Phosphatase Family for Rational Inhibitor Design [My Copy] Journal of Medicinal Chemistry, Vol. 0, No. 0. (0000) by Dušica Vidović, Stephan C. Schürer posted to ptp by ahmetbakan on 2009-10-07 19:49:47 as
	An Alternative Method for the Evaluation of Docking Performance: RSR vs RMSD [My Copy] J. Chem. Inf. Model. (4 July 2008) by Dilmurat Yusuf, Andrew M. Davis, Gerard J. Kleywegt, Stefan Schmitt posted to docking scoring by ahmetbakan on 2009-02-22 21:36:47 as along with 3 people BragilMassoud reyez mcaruso13
	Specific Inactivation and Nuclear Anchoring of Extracellular Signal-Regulated Kinase 2 by the Inducible Dual-Specificity Protein Phosphatase DUSP5 [My Copy] Mol. Cell. Biol., Vol. 25, No. 5. (1 March 2005), pp. 1830-1845. by Margret Mandl, David N. Slack, Stephen M. Keyse posted to mapk mkps by ahmetbakan on 2009-02-16 22:49:38 as
	A role for MKP3 in axial patterning of the zebrafish embryo [My Copy] Development, Vol. 131, No. 12. (15 June 2004), pp. 2769-2779. by Michael Tsang, Shingo Maegawa, Anne Kiang, Raymond Habas, Eric Weinberg, Igor B. Dawid posted to fgf_signaling mkps zebra_fish by ahmetbakan on 2009-02-16 20:56:04 as
	Identification of Sef, a novel modulator of FGF signalling. [My Copy] Nature cell biology, Vol. 4, No. 2. (February 2002), pp. 165-169. by M. Tsang, R. Friesel, T. Kudoh, I. B. Dawid posted to fgf_signaling zebra_fish by ahmetbakan on 2009-02-16 20:55:21 as along with 1 person jamesy8008
	Generation of FGF reporter transgenic zebrafish and their utility in chemical screens [My Copy] BMC Developmental Biology, Vol. 7 (06 June 2007), 62. by Gabriela A. Molina, Simon C. Watkins, Michael Tsang posted to fgf_signaling screening by ahmetbakan on 2009-02-16 20:18:49 as along with 1 person lisa1
	In vivo drug discovery in the zebrafish [My Copy] Nature Reviews Drug Discovery, Vol. 4, No. 1. (01 January 2005), pp. 35-44. by Leonard I. Zon, Randall T. Peterson posted to drug_discovery review by ahmetbakan on 2009-02-16 20:15:06 as along with 4 people sameersoi ajaymalik theogony guhjy
	Dusp6 (Mkp3) is a negative feedback regulator of FGF-stimulated ERK signaling during mouse development [My Copy] Development, Vol. 134, No. 1. (1 January 2007), pp. 167-176. by Chaoying Li, Daryl A. Scott, Ekaterina Hatch, Xiaoyan Tian, Suzanne L. Mansour posted to mapk mkps fgf_signaling by ahmetbakan on 2009-02-16 20:12:17 as along with 3 people dkoveal agonzale jamesy8008
	Promotion and Attenuation of FGF Signaling Through the Ras-MAPK Pathway [My Copy] Sci. STKE, Vol. 2004, No. 228. (13 April 2004), pe17. by Michael Tsang, Igor B. Dawid posted to fgf_signaling by ahmetbakan on 2009-02-16 20:05:16 as along with 2 people lisa1 jamesy8008
	Mechanisms underlying differential responses to FGF signaling. [My Copy] Cytokine Growth Factor Rev, Vol. 16, No. 2. (April 2005), pp. 233-247. by L. Dailey, D. Ambrosetti, A. Mansukhani, C. Basilico posted to fgf_signaling by ahmetbakan on 2009-02-16 20:04:25 as along with 1 person lisa1
	Functions and regulations of fibroblast growth factor signaling during embryonic development. [My Copy] Developmental biology, Vol. 287, No. 2. (15 November 2005), pp. 390-402. by Bernard Thisse, Christine Thisse posted to fgf_signaling by ahmetbakan on 2009-02-16 20:02:37 as along with 2 people jamesy8008 lisa1
	Structure and regulation of MAPK phosphatases [My Copy] Cellular Signalling, Vol. 16, No. 7. (July 2004), pp. 769-779. by A. Farooq, M. Zhou posted to mkps review by ahmetbakan on 2009-02-11 19:57:57 as along with 1 person dkoveal
	Principal Component Analysis of Native Ensembles of Biomolecular Structures (PCA_NEST): Insights into Functional Dynamics [My Copy] Bioinformatics (15 January 2009), btp023. by Lee-Wei Yang, Eran Eyal, Ivet Bahar, Akio Kitao posted to anm dynamics pca by ahmetbakan on 2009-01-29 17:02:04 as along with 4 people and 1 group sobolevnrm agomez carlosjavierna apaydin baker-group

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fgf_signaling	7
mkps	5
dynamics	3
educational	3
review	3
anm	2
conformational_selection	2
enm	2
induced-fit	2
mapk	2
nma	2
pca	2
zebra_fish	2
allostery	1
binding_affinity	1
cavity_detection	1
continuum_solvation_models	1
docking	1
drug_discovery	1
drug_t	1
enzymes	1
essential-dynamics	1
flexibility	1
free_energy	1
gnm	1
pharmacophore	1
ptp	1
rnase_h	1
scoring	1
screening	1

ahmetbakan's library 32 articles Export

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