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ajgentles's library [32 articles]

Recent papers added to ajgentles's library.
  • GBNet: Deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approach
    BMC Bioinformatics, Vol. 9 (24 September 2008), 395.
    by Li Shen, Jie Liu, Wei Wang
    posted to no-tag by ajgentles on 2008-10-14 19:36:32 as *** along with 1 person sjung
  • Smad4 is critical for self-renewal of hematopoietic stem cells.
    The Journal of experimental medicine, Vol. 204, No. 3. (19 March 2007), pp. 467-474.
    by G Karlsson, U Blank, JL Moody, M Ehinger, S Singbrant, CX Deng, S Karlsson
    posted to no-tag by ajgentles on 2008-10-13 23:02:15 as **
  • Resistance to TGF-beta 1 correlates with aberrant expression of TGF-beta receptor II in human B-cell lymphoma cell lines.
    Blood, Vol. 109, No. 12. (15 June 2007), pp. 5301-5307.
    by G Chen, P Ghosh, H Osawa, CY Sasaki, L Rezanka, J Yang, TJ O'Farrell, DL Longo
    posted to no-tag by ajgentles on 2008-10-13 23:01:08 as **
  • Transforming growth factor beta suppresses human telomerase reverse transcriptase (hTERT) by Smad3 interactions with c-Myc and the hTERT gene.
    The Journal of biological chemistry, Vol. 281, No. 35. (1 September 2006), pp. 25588-25600.
    by H Li, D Xu, J Li, MC Berndt, JP Liu
    posted to no-tag by ajgentles on 2008-10-13 23:00:10 as **
  • THE DYNAMICS OF CHROMOSOME ORGANIZATION AND GENE REGULATION - Annual Review of Biochemistry, 72(1):573 - Full Text
    posted to chromosome gene organization regulation by ajgentles on 2007-12-18 17:58:45 as ***
  • Spatial organization of active and inactive genes and noncoding DNA within chromosome territories
    J. Cell Biol., Vol. 157, No. 4. (13 May 2002), pp. 579-589.
    by Nicola L Mahy, Paul E Perry, Susan Gilchrist, Richard A Baldock, Wendy A Bickmore
    posted to chromosome gene organization regulation by ajgentles on 2007-12-18 17:57:44 as **
  • Modulating the Expression of Disease Genes with RNA-Based Therapy.
    PLoS Genet, Vol. 3, No. 6. (29 June 2007)
    by Matthew Wood, Haifang Yin, Graham McClorey
    posted to no-tag by ajgentles on 2007-07-24 20:34:12 as ** along with 1 person sebastien_vigneau
  • Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models
    PLoS Genetics, Vol. 3, No. 6. (1 June 2007), e96.
    by Manway Liu, Arthur Liberzon, Sek W Kong, Weil R Lai, Peter J Park, Isaac S Kohane, Simon Kasif
    posted to no-tag by ajgentles on 2007-07-24 20:33:59 as ** along with 3 people tmmurali jfr dragonrez
  • Gene expression profiling analysis of the inner ear.
    Hear Res, Vol. 225, No. 1-2. (March 2007), pp. 1-10.
    by MS Hildebrand, MG de Silva, T Klockars, CA Campbell, RJ Smith, HH Dahl
    posted to no-tag by ajgentles on 2007-07-15 20:48:59 as **
  • Serotonin 2B receptor: Upregulated with age and hearing loss in mouse auditory system
    Neurobiology of Aging, Vol. 28, No. 7. (July 2007), pp. 1112-1123.
    by Sherif F Tadros, Mary D'Souza, Martha L Zettel, Xiaoxia Zhu, Martha Lynch-Erhardt, Robert D Frisina
    posted to hearing mouse by ajgentles on 2007-07-09 19:39:59 as ** along with 1 person Robyn
  • Gene Expression Profile of the Mouse Organ of Corti at the Onset of Hearing
    Genomics, Vol. 83, No. 6. (June 2004), pp. 1000-1011.
    by Celine Pompeia, Belen Hurle, Inna A Belyantseva, Konrad Noben-Trauth, Kirk Beisel, James Gao, Patee Buchoff, Graeme Wistow, Bechara Kachar
    posted to hearing mouse by ajgentles on 2007-07-09 19:36:43 as **
  • Identification of genes expressed in the Xenopus inner ear.
    Cell Mol Biol (Noisy-le-grand), Vol. 47, No. 7. (November 2001), pp. 1229-1239.
    by EE Serrano, C Trujillo-Provencio, DR Sultemeier, WM Bullock, QA Quick
    posted to ear expressed genes xenopus by ajgentles on 2007-07-08 20:31:08 as **
  • Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models
    PLoS Genetics, Vol. 3, No. 6. (1 June 2007), e96.
    by Manway Liu, Arthur Liberzon, Sek W Kong, Weil R Lai, Peter J Park, Isaac S Kohane, Simon Kasif
    posted to analysis network by ajgentles on 2007-06-21 19:07:17 as ** along with 4 people tmmurali zwang cabbagezs chrisamiller
  • Genome-wide transcription and the implications for genomic organization.
    Nat Rev Genet (8 May 2007)
    by Philipp Kapranov, Aarron T T Willingham, Thomas R R Gingeras
    posted to transcription by ajgentles on 2007-06-19 17:38:48 as **** along with 17 people and 5 groups emptyhb pengchy jyuh balicea xico dchughes kengg sebastien_vigneau zwang Ema asddd hanansh antonkratz vietanh0 maximilianh GeeSharpMinor inesdesantiago Bioinformatics WetBiology G4ID Plantandetc Genetics-of-Gambling
  • The nuclear envelope and transcriptional control
    Nature Reviews Genetics, Vol. 8, No. 7. (05 June 2007), pp. 507-517.
    by Asifa Akhtar, Susan M Gasser
    posted to control envelope nuclear transcriptional by ajgentles on 2007-06-19 17:36:37 as ** along with 2 people and 2 groups dchughes margaritis G4ID Genetics-of-Gambling
  • RNA regulons: coordination of post-transcriptional events
    Nature Reviews Genetics, Vol. 8, No. 7., pp. 533-543.
    by Jack D Keene
    posted to regulation rna transcriptional by ajgentles on 2007-06-19 17:35:47 as **** along with 2 people and 2 groups jyuh jonathanjacobs Molecular Biology PROTEIN TRANSLATION
  • Predictive Modeling of Signaling Crosstalk during C. elegans Vulval Development
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e92.
    by Jasmin Fisher, Nir Piterman, Alex Hajnal, Thomas A Henzinger
    posted to c crosstalk elegans modeling signaling by ajgentles on 2007-05-25 17:38:30 as ** along with 3 people and 2 groups kristgy roland_ewald carmaus dIEMoSIRIS MoSi-Rostock
  • Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e90.
    by Timothy E Reddy, Charles Delisi, Boris E Shakhnovich
    posted to binding factor prediction site transcription by ajgentles on 2007-05-25 17:33:16 as ** along with 2 people and 1 group dpollard adepace EisenLab
  • Systemic cancer progression and tumor dormancy: mathematical models meet single cell genomics.
    Cell Cycle, Vol. 5, No. 16. (August 2006), pp. 1788-1798.
    by CA Klein, D Hölzel
    posted to cancer modeling progression by ajgentles on 2007-05-22 19:47:07 as **
  • Flexible and accurate detection of genomic copy-number changes from aCGH
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 May 2007), e122.eor.
    by Oscar M Rueda, Ramon Diaz-Uriarte
    posted to acgh changes copy number by ajgentles on 2007-05-21 17:55:15 as **
  • Selective Translational Repression of Truncated Proteins from Frameshift Mutation-Derived mRNAs in Tumors
    PLoS Biology, Vol. 5, No. 5. (1 May 2007), e109.
    by Kwon T You, Long S Li, Nam-Gyun Kim, Hyun J Kang, Kwi H Koh, Yong-Joon Chwae, Kyoung M Kim, Yoon K Kim, Sung M Park, Sung K Jang, Hoguen Kim
    posted to cancer frameshift mutations nmd by ajgentles on 2007-05-16 17:15:51 as **
  • Playing hide and seek with mammalian meiotic crossover hotspots.
    Trends Genet (12 April 2007)
    by Jérôme Buard, Bernard de Massy
    posted to hot recombination spots by ajgentles on 2007-05-06 02:46:35 as **
  • Modeling Systems-Level Regulation of Host Immune Responses
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 April 2007), e109.eor.
    by Juilee Thakar, Mylisa Pilione, Girish Kirimanjeswara, Eric T Harvill, Reka Albert
    posted to host immune modeling pathogens response by ajgentles on 2007-05-04 16:40:07 as **
  • SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms.
    BMC Bioinformatics, Vol. 7 (2006)
    by T Van den Bulcke, K Van Leemput, B Naudts, P van Remortel, H Ma, A Verschoren, B De Moor, K Marchal
    posted to data network synthetic validation by ajgentles on 2007-05-04 03:31:20 as ** along with 3 people Ayest tvdbulck frohike
  • Validating module network learning algorithms using simulated data
    BMC Bioinformatics, Vol. 8, No. Suppl 2. (2007)
    by Tom Michoel, Steven Maere, Eric Bonnet, Anagha Joshi, Yvan Saeys, Tim Van den Bulcke, Koenraad Van Leemput, Piet van Remortel, Martin Kuiper, Kathleen Marchal, Yves Van de Peer
    posted to data network synthetic validation by ajgentles on 2007-05-04 03:30:40 as ** along with 7 people and 2 groups irinamohorianu ptrobajo shigepong erbon vietanh0 mattjb srp33 ComplexAdaptiveSystems DSTO-CAS
  • Chemical biology: Ignore the nonsense
    Nature (22 April 2007)
    by Anton Schmitz, Michael Famulok
    posted to avoidance decay mediated nonsense by ajgentles on 2007-05-02 19:34:49 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Multiplexing to the max
    Nature Methods, Vol. 4, No. 5., pp. 381-381.
    by Allison Doerr
    posted to microfluidics multiplexing by ajgentles on 2007-05-02 18:51:55 as **
  • Protein-protein interactions: better by the dozen
    Nature Methods, Vol. 4, No. 5., pp. 389-389.
    by Veronique Kiermer
    posted to interactions protein-protein yeast by ajgentles on 2007-05-02 18:51:21 as **
  • Comparative genomics using Fugu reveals insights into regulatory subfunctionalization
    Genome Biology, Vol. 8 (11 April 2007), R53.
    by Adam Woolfe, Greg Elgar
    posted to cnes evolution fugu regulatory by ajgentles on 2007-05-02 18:47:34 as ** along with 2 people and 1 group adepace ajpowell EisenLab
  • Discovery of tissue-specific exons using comprehensive human exon microarrays
    Genome Biology, Vol. 8 (24 April 2007), R64.
    by Tyson A Clark, Anthony C Schweitzer, Tina X Chen, Michelle K Staples, Gang Lu, Hui Wang, Alan Williams, John E Blume
    posted to exon expression gene specific tissue by ajgentles on 2007-05-02 18:44:47 as ** along with 3 people jo_davies jyuh jfr
  • Statistical tools for synthesizing lists of differentially expressed features in related experiments
    Genome Biology, Vol. 8 (11 April 2007), R54.
    by Marta Blangiardo, Sylvia Richardson
    posted to bayesian comparing experiments expression gene by ajgentles on 2007-05-02 18:43:09 as ** along with 4 people jyuh jfr dayjm heliopais
  • Developing a systems-level understanding of gene expression
    Genome Biology, Vol. 8 (30 April 2007), 304.
    by Olivier Elemento
    posted to conference expression gene networks summary systems by ajgentles on 2007-05-02 18:37:32 as *** along with 1 person mdharsee
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