akshayk's library 79 articles Export

	Recent progress in multiple sequence alignment: a survey. [My Copy] Pharmacogenomics, Vol. 3, No. 1. (January 2002), pp. 131-144. by Cédric Notredame posted to survey sequence_alignment multiple_sequence_alignment compbio alignment by akshayk on 2009-10-19 19:28:23 as along with 1 person newton1234
	Finding security vulnerabilities in java applications with static analysis [My Copy] In SSYM'05: Proceedings of the 14th conference on USENIX Security Symposium (2005), pp. 18-18. by V. Benjamin Livshits, Monica S. Lam posted to web_application_security static_analysis stanford security joe_e information_flow by akshayk on 2009-10-16 23:13:45 as along with 3 people qdw1987 srccheck praveenbala
	Pixy: A Static Analysis Tool for Detecting Web Application Vulnerabilities (Short Paper) [My Copy] In IN 2006 IEEE SYMPOSIUM ON SECURITY AND PRIVACY (2006), pp. 258-263. by Nenad Jovanovic, Christopher Kruegel, Engin Kirda posted to web_applications web_application_security security joe_e information_flow_control by akshayk on 2009-10-16 22:56:06 as along with 1 person AnneB
	Securing web application code by static analysis and runtime protection [My Copy] In WWW '04: Proceedings of the 13th international conference on World Wide Web (2004), pp. 40-52. by Yao W. Huang, Fang Yu, Christian Hang, Chung H. Tsai, Der T. Lee, Sy Y. Kuo posted to web_applications web_application_security static_analysis security joe_e information_flow_control by akshayk on 2009-10-16 22:53:34 as along with 5 people mercutio linekin emiliorp GeoffWozniak network01
	From Languages to Systems: Understanding Practical Application Development in Security-typed Languages [My Copy] Computer Security Applications Conference, Annual, Vol. 0 (2006), pp. 153-164. by Boniface Hicks, Kiyan Ahmadizadeh, Patrick McDaniel posted to security pennstate language_extensions joe_e application_development by akshayk on 2009-10-16 22:33:19 as
	Implementing Multiple Protection Domains in Java [My Copy] In In Proceedings of the 1998 USENIX Annual Technical Conference (1998), pp. 259-270. by Chris Hawblitzel, Chi-chao Chang, Grzegorz Czajkowski, Deyu Hu, Thorsten Von Eicken posted to security joe_e java harvard by akshayk on 2009-10-16 18:40:47 as
	Labels and event processes in the asbestos operating system [My Copy] In In Proc. 20th ACM Symp. on Operating System Principles (SOSP (2005), pp. 17-30. by Petros Efstathopoulos, Maxwell Krohn, Steve Vandebogart, et al.Cliff Frey, David Ziegler, Eddie Kohler, David Mazières, Frans Kaashoek, Robert Morris posted to security joe_e information_flow_control by akshayk on 2009-10-15 07:41:35 as
	A Guide to Building Secure Web Applications [My Copy] (22 September 2002) by Mark Curphey, David Endler, William Hau, et al.Steve Taylor, Tim Smith, Alex Russell, Gene McKenna, Richard Parke, Kevin McLaughlin, Nigel Tranter, Amit Klien, Dennis Groves, Izhar By-Gad, Sverre Huseby, Martin Eizner, Michael Hill, Roy McNamara posted to web_applications security owasp joe_e by akshayk on 2009-10-14 00:33:41 as
	Developing secure Web applications [My Copy] Internet Computing, IEEE In Internet Computing, IEEE, Vol. 6, No. 6. (10 December 2002), pp. 38-45. by D. Scott, R. Sharp posted to swap security joe_e cambridge by akshayk on 2009-10-14 00:11:21 as along with 1 person AnneB
	The Oz-E Project: Design Guidelines for a Secure Multiparadigm Programming Language [My Copy] Multiparadigm Programming in Mozart/OZ (2005), pp. 21-40. by Fred Spiessens, Peter Van Roy posted to security oze joe_e capability by akshayk on 2009-10-13 23:33:11 as
	JFlow: Practical Mostly-Static Information Flow Control [My Copy] In In Proc. 26th ACM Symp. on Principles of Programming Languages (POPL (1999), pp. 228-241. by Andrew C. Myers posted to security jif information_flow_control cornell by akshayk on 2009-10-13 23:26:46 as
	SIF: enforcing confidentiality and integrity in web applications [My Copy] In 16th USENIX Security Symposium on USENIX Security Symposium (SS'07) (2007), pp. 1-16. by Stephen Chong, K. Vikram, Andrew C. Myers posted to security information_flow_control cornell by akshayk on 2009-10-13 23:23:10 as along with 1 person michaelbanks
	Identification of functional modules using network topology and high-throughput data. [My Copy] BMC systems biology, Vol. 1, No. 1. (2007), 8. by Igor Ulitsky, Ron Shamir posted to tau networks gene_pathway compbio bioinformatics by akshayk on 2009-09-27 04:17:43 as along with 18 people greg ptrobajo yaredo isimpson qluo aheilbut zufar roys frohike tmmurali dragonrez jfr wnpx Ao_Li2007 lyndon bertelsen ellakat carlk
	Classification of microarray data using gene networks. [My Copy] BMC bioinformatics, Vol. 8, No. 1. (01 February 2007), 35. by Franck Rapaport, Andrei Zinovyev, Marie Dutreix, Emmanuel Barillot, Jean-Philippe P. Vert posted to gene_pathway compbio bioinformatics by akshayk on 2009-09-27 04:12:58 as along with 8 people yaredo aramesh2 zufar SaraNasser jfr heliopais saman_vp tresch
	KEGG: Kyoto Encyclopedia of Genes and Genomes [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 27-30. by Minoru Kanehisa, Susumu Goto posted to kegg gene_pathway compbio by akshayk on 2009-09-23 23:24:27 as along with 20 people mauriceccy jeremymiller cgaugain VGreiff karinlag sgoetz namunet csanford dquest j3xucite fisherp koerner ruvido noby naegele katerinakal grottenolm Evangelia natstreet jerome_ucsf_slb
	Coarse-to-Fine Dynamic Programming [My Copy] IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol. 23, No. 12. (2001), pp. 1379-1390. by C. Raphael posted to probabilistic hmm graphicalmodels dynamic_programming compbio by akshayk on 2009-09-21 07:13:32 as
	Joint estimation of gene conversion rates and mean conversion tract lengths from population SNP data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i231-239. by Junming Yin, Michael I. Jordan, Yun S. Song posted to song snp probabilistic hmm graphicalmodels compbio bioinformatics berkeley by akshayk on 2009-09-21 07:07:01 as along with 3 people and 1 group AlexBateman djkt sameersoi Journal picks
	Algorithms for variable length Markov chain modeling [My Copy] Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 788-789. by Gill Bejerano posted to algorithms bioinformatics compbio markovchain probabilistic by akshayk on 2009-07-28 12:07:51 as
	Random binary matrices in biogeographical ecology—Instituting a good neighbor policy [My Copy] Environmental and Ecological Statistics, Vol. 9, No. 4. (1 December 2002), pp. 405-421. by Arif Zaman, Daniel Simberloff posted to bioinformatics compbio ecology graphs networks randomization by akshayk on 2009-07-27 11:55:25 as
	Current progress in network research: toward reference networks for key model organisms [My Copy] Brief Bioinform, Vol. 8, No. 5. (1 September 2007), pp. 318-332. by Balaji S. Srinivasan, Nigam H. Shah, Jason A. Flannick, Eduardo Abeliuk, Antal F. Novak, Serafim Batzoglou posted to alignment bioinformatics networkalignment networks stanford by akshayk on 2009-07-25 20:21:38 as along with 10 people and 1 group carlk abhishek_tiwari ptrobajo pengchy guhjy grahamc nedwards roys daed marck Bioinformatics
	Automatic Parameter Learning for Multiple Network Alignment [My Copy] Research in Computational Molecular Biology (2008), pp. 214-231. by Jason Flannick, Antal Novak, Chuong Do, Balaji Srinivasan, Serafim Batzoglou posted to alignment bioinformatics networkalignment networks stanford by akshayk on 2009-07-25 20:17:35 as along with 1 person anuragsethi
	Algorithms for connected set cover problem and fault-tolerant connected set cover problem [My Copy] Theor. Comput. Sci., Vol. 410, No. 8-10. (2009), pp. 812-817. by Zhao Zhang, Xiaofeng Gao, Weili Wu posted to algorithms csc networks theory by akshayk on 2009-07-21 17:04:11 as
	Graph-based iterative Group Analysis enhances microarray interpretation [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (23 July 2004), 100. by Rainer Breitling, Anna Amtmann, Pawel Herzyk posted to bioinformatics microarray networks by akshayk on 2009-07-21 10:32:12 as along with 2 people roys hubcite
	Learning to Map Sentences to Logical Form: Structured Classification with Probabilistic Categorial Grammars [My Copy] In Proceedings of the 21th Annual Conference on Uncertainty in Artificial Intelligence (UAI-05) (2005), pp. 658-66. by Luke S. Zettlemoyer, Michael Collins posted to ai grammars nlp probabilistic by akshayk on 2009-07-21 09:39:37 as
	An interface for targeted collection of common sense knowledge using a mixture model [My Copy] In IUI '09: Proceedings of the 13th international conference on Intelligent user interfaces (2009), pp. 137-146. by Robert Speer, Jayant Krishnamurthy, Catherine Havasi, Dustin Smith, Henry Lieberman, Kenneth Arnold posted to ai analogy mit omcs by akshayk on 2009-07-21 09:32:10 as along with 2 people and 3 groups Scis0000002 brusilovsky Adaptive-Web Social Web CMU-HCII
	Discovering regulatory and signalling circuits in molecular interaction networks. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1, No. suppl_1. (1 July 2002), pp. S233-240. by Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel posted to bioinformatics microarray networks ucsd by akshayk on 2009-07-21 09:24:14 as along with 15 people and 2 groups myzhang tmmurali wilbur arne junehlee cswinburne isimpson yaredo dragonrez okarsligil lfriedl noano koller frohike carlk kdl Bioinformatics
	Structure-mapping: A theoretical framework for analogy [My Copy] Cognitive Science, Vol. 7, No. 2. ( 1983), pp. 155-170. by Dedre Gentner posted to ai analogy by akshayk on 2009-06-22 17:26:18 as along with 6 people and 1 group vankov voiklis rebeccamancy garyfeng hirachi rspeer ReadingLab
	Paxos Made Simple [My Copy] (1 November 2001) by Leslie Lamport posted to cs262a distributedcomputing microsoft paxos systems by akshayk on 2009-06-18 10:32:54 as
	Dynamo: amazon's highly available key-value store [My Copy] In SOSP '07: Proceedings of twenty-first ACM SIGOPS symposium on Operating systems principles (2007), pp. 205-220. by Giuseppe Decandia, Deniz Hastorun, Madan Jampani, et al.Gunavardhan Kakulapati, Avinash Lakshman, Alex Pilchin, Swaminathan Sivasubramanian, Peter Vosshall, Werner Vogels posted to amazon cs262a databases dynamo systems by akshayk on 2009-06-18 10:17:32 as along with 23 people and 2 groups kawamoto MaineC nlong wanghc dennis2008 mogwaing frdr tatemura dmeister jorritschippers muli momo54 charoy oster myui ahgharaibeh rstata HenryR mdwelsh gimmedonutnow los icecube rfonseca ecoo-ce SOSP
	On optimistic methods for concurrency control [My Copy] ACM Trans. Database Syst., Vol. 6, No. 2. (June 1981), pp. 213-226. by H. T. Kung, John T. Robinson posted to cmu concurrency cs262a databases systems by akshayk on 2009-06-18 10:14:13 as along with 6 people Scis0000002 neilc epaulson bunge yang ejones
	Xen and the art of virtualization [My Copy] In SOSP '03: Proceedings of the nineteenth ACM symposium on Operating systems principles (2003), pp. 164-177. by Paul Barham, Boris Dragovic, Keir Fraser, et al.Steven Hand, Tim Harris, Alex Ho, Rolf Neugebauer, Ian Pratt, Andrew Warfield posted to cambridge cs262a systems vms xen by akshayk on 2009-06-18 10:13:19 as along with 39 people and 8 groups thermostat adit262 raoul1024 priteau pkt zhensong sachingarg mitake pwais bmarincas brucellino urvoy Gauravsomani pedagand eolmedo kywk carlblesius muli sammydre diwakergupta dmikurube rahul dcraven criswell baurm vivianniu unitial watersong kartoch takatosi cybrpunk rkb napvasconcelos yarapavan mrry csong srinivas_krishnan king_yous dmeister Highly-Available Services at UTCN Blog_and_Wiki_Research mgh-lcs WAND hst-bmi SRL sysnet dopsy
	Stasis: flexible transactional storage [My Copy] In OSDI '06: Proceedings of the 7th symposium on Operating systems design and implementation (2006), pp. 29-44. by Russell Sears, Eric Brewer posted to berkeley cs262a filesystems systems by akshayk on 2009-06-18 10:12:02 as along with 2 people jahwa myui
	The UNIX time-sharing system [My Copy] Commun. ACM, Vol. 17, No. 7. (July 1974), pp. 365-375. by Dennis M. Ritchie, Ken Thompson posted to belllabs cs262a systems unix by akshayk on 2009-06-18 10:11:03 as along with 4 people pedagand mitake Fantozzi muli
	MapReduce: simplified data processing on large clusters [My Copy] Commun. ACM, Vol. 51, No. 1. (January 2008), pp. 107-113. by Jeffrey Dean, Sanjay Ghemawat posted to cs262a distributedcomputing google mapreduce systems by akshayk on 2009-06-18 10:09:47 as along with 23 people and 2 groups jweslley zhaomin yingbo mfisk rijo pprett urvoy verma7 jborn jorritschippers arsyed echi dullhunk thiagomanel knowlengr mircea jwong wentrue mpotamias dmeister quanpt jliegl aespinosa large-scale-ml Desktop Data Grid
	The design and implementation of a log-structured file system [My Copy] ACM Trans. Comput. Syst., Vol. 10, No. 1. (February 1992), pp. 26-52. by Mendel Rosenblum, John K. Ousterhout posted to berkeley cs262a filesystems systems by akshayk on 2009-06-18 10:08:01 as along with 14 people and 2 groups pedagand robertjohnsimmons gtsysqual mogwaing frdr oteri dfabbri shehjart dsilva diwakergupta pool007 thiagomanel Wombat dmeister sysnet Desktop Data Grid
	Memory resource management in VMware ESX server [My Copy] SIGOPS Oper. Syst. Rev., Vol. 36, No. SI. (2002), pp. 181-194. by Carl A. Waldspurger posted to memorymanagement systems vmware by akshayk on 2009-06-18 10:05:47 as along with 9 people and 1 group adit262 gtsysqual mrt2k9 aliguori godmar cybrpunk mejlholm HenryR srinivas_krishnan dopsy
	Experience with processes and monitors in Mesa [My Copy] Commun. ACM, Vol. 23, No. 2. (February 1980), pp. 105-117. by Butler W. Lampson, David D. Redell posted to concurrency cs262a mesa systems by akshayk on 2009-06-18 10:01:47 as along with 4 people and 1 group pedagand neilc RobotAdam diwakergupta sysnet
	AnalogySpace: Reducing the Dimensionality of Common Sense Knowledge [My Copy] In AAAI (2008-08-15 2008), pp. 548-553. by Robert Speer, Catherine Havasi, Henry Lieberman edited by Dieter Fox, Carla P. Gomes posted to ai analogy mit omcs svd by akshayk on 2009-06-18 09:52:10 as
	Knowledge-based analysis of microarray gene expression data by using support vector machines [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 1. (4 January 2000), pp. 262-267. by Michael P. S. Brown, William N. Grundy, David Lin, et al.Nello Cristianini, Charles W. Sugnet, Terrence S. Furey, Manuel Ares, David Haussler posted to bioinformatics machinelearning microarray svm ucsc by akshayk on 2009-06-18 09:45:12 as along with 6 people and 4 groups seb1 nickolay petrposik neveaire dps srp33 Biostatistics Computational-Genomics Bioinformatics Neuroscience
	Studying statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the eukaryotic genomes [My Copy] Brief Bioinform, Vol. 7, No. 1. (1 March 2006), pp. 48-54. by Irina Abnizova, Walter R. Gilks posted to bioinformatics motif-discovery regulatory by akshayk on 2009-06-16 20:24:28 as
	Computer science and bioinformatics [My Copy] Commun. ACM, Vol. 48, No. 3. (2005), pp. 72-78. by Jacques Cohen posted to bioinformatics by akshayk on 2009-06-16 20:19:58 as
	Modeling cellular machinery through biological network comparison. [My Copy] Nature biotechnology, Vol. 24, No. 4. (06 April 2006), pp. 427-433. by Roded Sharan, Trey Ideker posted to bioinformatics networkalignment sysbio tau by akshayk on 2009-06-15 19:38:18 as along with 22 people and 1 group chica sergiun cswinburne kaarsinogen isimpson tmmurali kuhn tuck yas balajis wnpx ma_ko gurkanbebek koller gcalda grahamc massivemayhem karfunkel mingzhi vietanh0 cdeane carlk T_lab
	Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles [My Copy] Research in Computational Molecular Biology (2008), pp. 347-359. by Igor Ulitsky, Richard Karp, Ron Shamir posted to algorithms berkeley bioinformatics microarray sysbio tau theory by akshayk on 2009-06-15 09:21:19 as along with 2 people ptrobajo poirel
	Allegro: Analyzing expression and sequence in concert to discover regulatory programs [My Copy] Nucl. Acids Res. (16 January 2009), gkn1064. by Yonit Halperin, Chaim Linhart, Igor Ulitsky, Ron Shamir posted to bioinformatics mirna motif-discovery tau by akshayk on 2009-06-15 09:16:02 as along with 2 people rdiaz nuin
	Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets. [My Copy] Genome research (14 April 2008) by Chaim Linhart, Yonit Halperin, Ron Shamir posted to bioinformatics mirna motif-discovery sysbio tau by akshayk on 2009-06-15 09:12:56 as along with 12 people and 1 group dolchan wowalz natstreet valeriehilgers jfr ealloza idonaldson maralena fpattyn isimpson tmmurali maximilianh BergmanLab
	Ethane: taking control of the enterprise [My Copy] In SIGCOMM '07: Proceedings of the 2007 conference on Applications, technologies, architectures, and protocols for computer communications (2007), pp. 1-12. by Martin Casado, Michael J. Freedman, Justin Pettit, Jianying Luo, Nick Mckeown, Scott Shenker posted to architecture berkeley cs294-28 netsec by akshayk on 2009-06-15 09:09:27 as along with 1 person urvoy
	Can Ferris Bueller still have his day off? protecting privacy in the wireless era [My Copy] In HOTOS'07: Proceedings of the 11th USENIX workshop on Hot topics in operating systems (2007), pp. 1-6. by Ben Greenstein, Ramakrishna Gummadi, Jeffrey Pang, et al.Mike Y. Chen, Tadayoshi Kohno, Srinivasan Seshan, David Wetherall posted to cmu cs294-28 netsec privacy wireless by akshayk on 2009-06-15 09:08:18 as along with 1 person tnhh
	Conditioned-safe Ceremonies and a User Study of an Application to Web Authentication [My Copy] In Sixteenth Annual Network and Distributed Systems Security Symposium (NDSS 2009) (February 2009) by Chris Karlof, J. D. Tygar, David Wagner posted to authentication berkeley cs294-28 netsec by akshayk on 2009-06-15 09:06:23 as
	Spamscatter: Characterizing Internet Scam Hosting Infrastructure [My Copy] pp. 135-148. by David S. Anderson, Chris Fleizach, Stefan Savage, Geoffrey M. Voelker posted to cs294-28 netsec spam ucsd by akshayk on 2009-06-15 09:01:44 as along with 2 people and 1 group mfisk alexeysmirnov Security
	BotMiner: clustering analysis of network traffic for protocol- and structure-independent botnet detection [My Copy] In SS'08: Proceedings of the 17th conference on Security symposium (2008), pp. 139-154. by Guofei Gu, Roberto Perdisci, Junjie Zhang, Wenke Lee posted to botnet clustering cs294-28 netsec by akshayk on 2009-06-15 09:00:16 as along with 1 person jcreed

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cs294-28	23
security	21
netsec	20
bioinformatics	16
berkeley	12
systems	10
compbio	9
cs262a	9
joe_e	9
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tau	5
ai	4
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dos	4
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nids	4
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bro	2
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detection	2
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filesystems	2
flow	2
graphicalmodels	2
hmm	2
information	2
mirna	2
mit	2
omcs	2
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static_analysis	2
stolfo	2
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zeldovich	2
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attack	1
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backscatter	1
belllabs	1
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song	1
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swap	1
synkill	1
tcp	1
traceback	1
ucsc	1
unix	1
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vmware	1
wireless	1
xen	1

akshayk's library 79 articles Export

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