alexgeorgiou's bioinformatics [25 articles] Export

Recent papers added to alexgeorgiou's library classified by the tag bioinformatics. You can also see everyone's bioinformatics.

Hide details

	Spectral profiles: A novel representation of tandem mass spectra and its applications for de novo peptide sequencing and identification [My Copy] Mol Cell Proteomics (2 March 2009), M800535-MCP200. by Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner posted to algorithm bioinformatics denovo masspec proteomics by alexgeorgiou on 2009-03-03 09:53:33 as along with 2 people nedwards brianb
	Charge Prediction Machine: Tool for Inferring Precursor Charge States of Electron Transfer Dissociation Tandem Mass Spectra [My Copy] Analytical Chemistry, Vol. 0, No. 0. (0000) by Paulo C. Carvalho, Daniel Cociorva, Catherine C. Wong, Maria Carvalho, Valmir C. Barbosa, John R. Yates posted to bioinformatics charging deconvolution deisotoping isotope masspec proteomics software by alexgeorgiou on 2009-02-18 09:02:27 as
	Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase. [My Copy] Proteomics, Vol. 6, No. 18. (September 2006), pp. 5015-5029. by C. Stephan, K. A. Reidegeld, M. Hamacher, et al.A. van Hall, K. Marcus, C. Taylor, P. Jones, M. Müller, R. Apweiler, L. Martens, G. Körting, D. C. Chamrad, H. Thiele, M. Blüggel, D. Parkinson, P. A. Binz, A. Lyall, H. E. Meyer posted to bioinformatics masspec pipeline by alexgeorgiou on 2009-02-09 15:22:03 as
	BioJava: an Open-Source Framework for Bioinformatics [My Copy] Bioinformatics, Vol. 24, No. 18. (8 August 2008), pp. btn397-2097. by R. C. G. Holland, T. Down, M. Pocock, et al.A. Prlic, D. Huen, K. James, S. Foisy, A. Drager, A. Yates, M. Heuer, M. J. Schreiber posted to api bioinformatics java software by alexgeorgiou on 2009-02-02 13:19:32 as along with 15 people poggio84 djohnson l00cas ilyashl Cortel fbristow kgutwin daforerog niallhaslam guhjy reyez APRegier jamselem dullhunk siebert
	CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 2. (2008), S10. by Svetlin Manavski, Giorgio Valle posted to algorithm alignment bioinformatics gpgpu software by alexgeorgiou on 2009-01-28 09:40:43 as along with 9 people ihaque jmanning2k druvus sterovetta operon antonkratz joule pansapiens bschaeli
	Straightforward ladder sequencing of peptides using a Lys-N metalloendopeptidase [My Copy] Nat Meth, Vol. 5, No. 5. (20 May 2008), pp. 405-407. by Nadia Taouatas, Madalina M. Drugan, Albert J. R. Heck, Shabaz Mohammed posted to bioinformatics lys-n masspec proteomics by alexgeorgiou on 2009-01-28 09:28:13 as along with 1 person nedwards
	Grid-based analysis of tandem mass spectrometry data in clinical proteomics. [My Copy] Studies in health technology and informatics, Vol. 126 (2007), pp. 13-22. by A. Quandt, P. Hernandez, P. Kunzst, et al.C. Pautasso, M. Tuloup, C. Hernandez, R. D. Appel posted to bioinformatics grid masspec pipeline proteomics scheduling software by alexgeorgiou on 2009-01-27 15:51:28 as
	Screening the receptorome: an efficient approach for drug discovery and target validation [My Copy] Drug Discovery Today, Vol. 11, No. 15-16. (August 2006), pp. 708-716. by R. Strachan, G. Ferrara, B. Roth posted to bioinformatics receptome by alexgeorgiou on 2008-12-18 09:37:13 as
	Sensor I threonine of the AAA+ ATPase transcriptional activator PspF is involved in coupling nucleotide triphosphate hydrolysis to the restructuring of sigma 54-RNA polymerase. [My Copy] The Journal of biological chemistry, Vol. 282, No. 13. (30 March 2007), pp. 9825-9833. by J. Schumacher, N. Joly, M. Rappas, et al.D. Bradley, S. R. Wigneshweraraj, X. Zhang, M. Buck posted to aaa atpase bioinformatics pspf sigma54 walkera walkerb by alexgeorgiou on 2008-12-18 09:35:18 as
	MS-Analyzer: preprocessing and data mining services for proteomics applications on the Grid [My Copy] Concurrency and Computation: Practice and Experience, Vol. 19, No. 15. (2007), pp. 2047-2066. by Mario Cannataro, Pierangelo Veltri posted to bioinformatics grid masspec by alexgeorgiou on 2008-12-18 09:28:56 as along with 1 person cannataro
	Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra [My Copy] Mol Cell Proteomics (14 August 2008), M800103-MCP200. by Sangtae Kim, Nitin Gupta, Nuno Bandeira, Pavel A. Pevzner posted to bioinformatics denovo masspec by alexgeorgiou on 2008-12-18 09:27:34 as along with 2 people nedwards brianb
	An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database [My Copy] Journal of the American Society for Mass Spectrometry, Vol. 5, No. 11. (November 1994), pp. 976-989. by J. Eng posted to bioinformatics crosscorrelation masspec by alexgeorgiou on 2008-12-18 09:26:55 as
	Interpreting Top-Down Mass Spectra Using Spectral Alignment [My Copy] Analytical Chemistry, Vol. 80, No. 7. (1 April 2008), pp. 2499-2505. by Ari M. Frank, James J. Pesavento, Craig A. Mizzen, Neil L. Kelleher, Pavel A. Pevzner posted to bioinformatics masspec by alexgeorgiou on 2008-12-18 09:25:14 as along with 3 people nedwards guhjy brianb
	Cross-Correlation Algorithm for Calculation of Peptide Molecular Weight from Tandem Mass Spectra [My Copy] Anal. Chem., Vol. 78, No. 6. (15 March 2006), pp. 1921-1929. by J. D. Venable, T. Xu, D. Cociorva, J. R. Yates posted to bioinformatics crosscorrelation masspec by alexgeorgiou on 2008-12-18 09:23:58 as
	MSNovo: a dynamic programming algorithm for de novo peptide sequencing via tandem mass spectrometry. [My Copy] Anal Chem, Vol. 79, No. 13. (1 July 2007), pp. 4870-4878. by L. Mo, D. Dutta, Y. Wan, T. Chen posted to bioinformatics denovo masspec by alexgeorgiou on 2008-12-18 09:22:30 as along with 1 person guhjy
	PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry. [My Copy] Rapid communications in mass spectrometry : RCM, Vol. 17, No. 20. (2003), pp. 2337-2342. by B. Ma, K. Zhang, C. Hendrie, et al.C. Liang, M. Li, A. Doherty-Kirby, G. Lajoie posted to bioinformatics denovo masspec by alexgeorgiou on 2008-12-18 09:21:49 as
	AuDeNS: A Tool for Automatic De Novo Peptide Sequencing [My Copy] by Sacha Baginsky, Mark Cieliebak, Wilhelm Gruissem, Zsuzsanna Liptak, Matthias Muller, Paolo Penna posted to bioinformatics denovo masspec by alexgeorgiou on 2008-12-18 09:20:27 as
	Constrained De Novo Peptide Identification via Multi-objective Optimization [My Copy] by Malard, A. Heredia-Langner, Baxter, Jarman, Cannon posted to bioinformatics denovo masspec by alexgeorgiou on 2008-12-18 09:19:58 as
	Speeding up tandem mass spectrometry database search: metric embeddings and fast near neighbor search [My Copy] Bioinformatics, Vol. 23, No. 5. (March 2007), pp. 612-618. by Debojyoti Dutta, Ting Chen posted to bioinformatics masspec by alexgeorgiou on 2008-12-18 09:18:52 as along with 2 people guhjy nedwards
	Fast de novo peptide sequencing and spectral alignment via tree decomposition. [My Copy] Pac Symp Biocomput (2006), pp. 255-266. by C. Liu, Y. Song, B. Yan, Y. Xu, L. Cai posted to bioinformatics denovo masspec by alexgeorgiou on 2008-12-18 09:18:06 as along with 2 people mirzazadeh nedwards
	De novo peptide sequencing via tandem mass spectrometry. [My Copy] J Comput Biol, Vol. 6, No. 3-4. (r 1999), pp. 327-342. by V. Dancík, T. A. Addona, K. R. Clauser, J. E. Vath, P. A. Pevzner posted to bioinformatics denovo masspec by alexgeorgiou on 2008-12-18 09:17:21 as along with 1 person nedwards
	Introduction to Computational Proteomics [My Copy] PLoS Comput Biol, Vol. 3, No. 7. (27 July 2007), e114. by Jacques Colinge, Keiryn L. Bennett posted to bioinformatics proteomics by alexgeorgiou on 2008-12-18 09:15:57 as along with 12 people and 1 group Jporci phoenixzxl Borelli daforerog druvus giovenko guhjy chad_davis anwazo zwang cabbagezs groepl Bioinformatics
	MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications. [My Copy] Rapid communications in mass spectrometry : RCM, Vol. 18, No. 18. (2004), pp. 2162-2168. by W. H. McDonald, D. L. Tabb, R. G. Sadygov, et al.M. J. MacCoss, J. Venable, J. Graumann, J. R. Johnson, D. Cociorva, J. R. Yates posted to bioinformatics format masspec by alexgeorgiou on 2008-12-18 09:15:00 as
	A Fast SEQUEST Cross Correlation Algorithm [My Copy] J. Proteome Res. (6 September 2008) by Jimmy K. Eng, Bernd Fischer, Jonas Grossmann, Michael J. Maccoss posted to bioinformatics masspec by alexgeorgiou on 2008-12-18 09:09:26 as along with 3 people fishtank nedwards brianb
	A Model-Based Method for the Prediction of the Isotopic Distribution of Peptides [My Copy] Journal of the American Society for Mass Spectrometry by Dirk Valkenborg, Ivy Jansen, Tomasz Burzykowski posted to bioinformatics deconvolution deisotoping isotope masspec by alexgeorgiou on 2008-12-18 09:05:16 as

Note: You may cite this page as: http://www.citeulike.org/user/alexgeorgiou/tag/bioinformatics

bioinformatics	25
masspec	22
denovo	8
proteomics	5
software	5
algorithm	5
artificial	4
intelligence	4
modelling	4
deconvolution	3
discourse	3
science	3
deisotoping	3
scheduling	3
workflow	3
pipeline	3
cognitive	2
crosscorrelation	2
java	2
isotope	2
grid	2
neuroscience	2
lindenmayer	1
phosphorylation	1
physics	1
receptome	1
format	1
pspf	1
sigma54	1
machine	1
l-system	1
threads	1
multicore	1
alignment	1
reduce	1
walkerb	1
gpgpu	1
aaa	1
api	1
serotonin	1
multithreading	1
genetic	1
membrane	1
jomp	1
rationality	1
lys-n	1
humour	1
openmp	1
narrative	1
map	1
boinc	1
postmodern	1
walkera	1
pattern	1
learning	1
charging	1
atpase	1
pomo	1
act-r	1
p-systems	1

alexgeorgiou's bioinformatics [25 articles] Export

alexgeorgiou's tags