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alexisgallagher's library [36 articles]

Recent papers added to alexisgallagher's library.
  • Ultraconserved elements in the human genome.
    Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325.
    by G Bejerano, M Pheasant, I Makunin, S Stephen, WJ Kent, JS Mattick, D Haussler
    posted to importmenew by alexisgallagher on 2005-05-25 11:21:39 as ** along with 15 people and 5 groups Ema carlfulp karbak barry ujh bpb aprasad balicea dchughes pradiptaray djkt sujaikumar blobbybirdman cisevol fpattyn structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space.
    Proc Natl Acad Sci U S A, Vol. 96, No. 19. (14 September 1999), pp. 10689-10694.
    by E Bornberg-Bauer, HS Chan
    posted to no-tag by alexisgallagher on 2005-05-25 10:28:20 as ** along with 2 people and 1 group Einat gokhan structural_bioinformatics
  • The role of extinction in evolution.
    Proc Natl Acad Sci U S A, Vol. 91, No. 15. (19 July 1994), pp. 6758-6763.
    by DM Raup
    posted to no-tag by alexisgallagher on 2005-05-25 10:27:07 as ** along with 3 people and 2 groups karbak Flit cygrapher biodiversity_conservation Global_biodiversity_model
  • Generic properties of combinatory maps: neutral networks of RNA secondary structures.
    Bull Math Biol, Vol. 59, No. 2. (March 1997), pp. 339-397.
    by C Reidys, PF Stadler, P Schuster
    posted to neutralnetworks by alexisgallagher on 2005-05-25 10:26:20 as ** along with 1 person evaf
  • Replication and mutation on neutral networks.
    Bull Math Biol, Vol. 63, No. 1. (January 2001), pp. 57-94.
    by C Reidys, CV Forst, P Schuster
    posted to neutralnetworks by alexisgallagher on 2005-05-25 10:24:08 as **
  • Plasticity, evolvability, and modularity in RNA
    Journal of Experimental Zoology, Vol. 288, No. 3., pp. 242-283.
    by Lauren W Ancel, Walter Fontana
    posted to neutralnetworks rna by alexisgallagher on 2005-05-25 10:16:38 as **
  • Collective dynamics of 'small-world' networks.
    Nature, Vol. 393, No. 6684. (4 June 1998), pp. 440-442.
    by DJ Watts, SH Strogatz
    posted to importme by alexisgallagher on 2005-05-19 12:30:45 as ** along with 75 people and 13 groups jmenche chrisdubois tharris MehdiMoussaid jobriath camster G_RAM kewms KAllendoerfer AdrianMiles mague Rsavi zqshen shivaram cmmorel Shirakawa tolosoft nithya nygaard balicea dumpa matteodellamico yoh dullhunk voiklis eldaly ianturton merazzle maqbes muraken zono zeroknowledge choonpeng cerkut xinian mmartin king amac adriandefroment RafG radale jaspervoskuilen timflutre pbrandao sugaya ruvido rsantana cjeans fbaroni michaelmampaey rcrane ransombriggs suizan lpfernandes sbianco kb kaks stefanoallesina beete teferet ladamic iris_2001 livingthingdan jsanpedro jotwin ulmer takeha-e dylanwalker mpotamias jpbarrette Borelli jago ddahlem ilkert tomhebbron Network Data Repository C. elegans / WormBase dbk-lab GraphVis Semantic-Social-Networks microRNA Web2 Soslab CooperationStudies ColDyn contact-id ADMiRes 801
  • What is the promise of developmental evolution? Part II: A causal explanation of evolutionary innovations may be impossible.
    J Exp Zool, Vol. 291, No. 4. (15 December 2001), pp. 305-309.
    by GP Wagner
    posted to importme by alexisgallagher on 2005-05-19 12:29:00 as **
  • What is the promise of developmental evolution? Part I: why is developmental biology necessary to explain evolutionary innovations?
    J Exp Zool, Vol. 288, No. 2. (15 August 2000), pp. 95-98.
    by GP Wagner
    posted to importme by alexisgallagher on 2005-05-19 12:28:12 as **
  • Self-organization in evolution: a mathematical perspective.
    Philos Transact A Math Phys Eng Sci, Vol. 361, No. 1807. (15 June 2003), pp. 1101-1123.
    by I Stewart
    posted to importme by alexisgallagher on 2005-05-19 12:26:43 as ** along with 2 people ddahlem Ema
  • Yeast prions and evolvability.
    Trends Genet, Vol. 17, No. 4. (April 2001), pp. 167-169.
    by C Pál
    posted to importme by alexisgallagher on 2005-05-19 12:23:32 as **
  • The right stuff: appropriate mathematics for evolutionary and developmental biology (editors' introduction to the special issue)
    Artif. Life, Vol. 6, No. 1. (December 1999), pp. 1-2.
    by Chrystopher L Nehaniv, G&\#252;nter P Wagner
    posted to importme by alexisgallagher on 2005-05-19 12:21:41 as **
  • The evolutionary origin of complex features.
    Nature, Vol. 423, No. 6936. (8 May 2003), pp. 139-144.
    by RE Lenski, C Ofria, RT Pennock, C Adami
    posted to importme by alexisgallagher on 2005-05-19 12:16:57 as ** along with 9 people and 2 groups camster karimlakhani PeterCollins cmunson balicea rsantana RobMills ms609 blobbybirdman dbk-lab MACLab
  • The large-scale organization of metabolic networks.
    Nature, Vol. 407, No. 6804. (5 October 2000), pp. 651-654.
    by H Jeong, B Tombor, R Albert, ZN Oltvai, AL Barabási
    posted to importme by alexisgallagher on 2005-05-19 12:15:57 as ** along with 22 people and 2 groups camster snuppepuppan jpmague mague bjorns Borelli shivaram lfriedl cmmorel alexg Shirakawa ddahlem gcalda grahamc jrbanga karfunkel Evangelia shung pmendes stefanoallesina shikin dylanwalker dbk-lab kdl
  • Modeling genetic architecture: a multilinear theory of gene interaction.
    Theor Popul Biol, Vol. 59, No. 1. (February 2001), pp. 61-86.
    by TF Hansen, GP Wagner
    posted to importme by alexisgallagher on 2005-05-19 12:14:40 as **
  • The nature of human altruism
    Nature, Vol. 425, No. 6960. (23 October 2003), pp. 785-791.
    by Ernst Fehr, Urs Fischbacher
    posted to importme by alexisgallagher on 2005-05-19 12:11:34 as ** along with 8 people and 1 group orioriow brian klouie matta leo_20 nickstenning jagarciag shanemacfarlan Glimcher_Lab
  • Evolution: the evolvability enigma.
    Curr Biol, Vol. 11, No. 3. (6 February 2001)
    by JF Brookfield
    posted to importme by alexisgallagher on 2005-05-19 12:09:45 as *
  • Fatal attraction in rats infected with Toxoplasma gondii.
    Proc Biol Sci, Vol. 267, No. 1452. (7 August 2000), pp. 1591-1594.
    by M Berdoy, JP Webster, DW Macdonald
    posted to importme by alexisgallagher on 2005-05-19 12:09:05 as * along with 3 people craigtalbert Debe suizan
  • What is complexity?
    Bioessays, Vol. 24, No. 12. (December 2002), pp. 1085-1094.
    by C Adami
    posted to complexity by alexisgallagher on 2005-05-19 11:36:19 as read along with 20 people and 9 groups qaramazov korakot hamish A_Olympia AdrianMiles citematanalike yish wnpx ddahlem pverstra biosv jules59 sunilbajpai cgershen mattjb mbeautru timflutre tnhh TomQ rrbarb Philosophy_of_Information Blog_and_Wiki_Research mathgamespatterns dtl vds-arg eni macc ComplexAdaptiveSystems DSTO-CAS
  • Sequence complexity in Darwinian evolution
    Complexity, Vol. 8, No. 2. (21 March 2003), pp. 49-56.
    by Christoph Adami
    posted to complexity by alexisgallagher on 2005-05-19 11:26:16 as **
  • Error and attack tolerance of complex networks
    Nature, Vol. 406, No. 6794. (27 July 2000), pp. 378-382.
    by Reka Albert, Hawoong Jeong, Albert-Laszlo Barabasi
    posted to networks by alexisgallagher on 2005-05-19 11:13:16 as ** along with 14 people and 2 groups korakot shivaram cmmorel balicea yoh mmt jaspervoskuilen timflutre thehajime karfunkel Evangelia stefanoallesina tjpp dylanwalker Philosophy_of_Information Blog_and_Wiki_Research
  • Neutral evolution of mutational robustness.
    Proc Natl Acad Sci U S A, Vol. 96, No. 17. (17 August 1999), pp. 9716-9720.
    by E van Nimwegen, JP Crutchfield, M Huynen
    posted to mutationalrobustness neutralnetworks by alexisgallagher on 2005-05-18 01:42:09 as ** along with 5 people and 1 group eldan operon gokhan grisogono Spaans DSTO-CAS
  • Developmental evolution: getting robust about robustness.
    Curr Biol, Vol. 12, No. 10. (14 May 2002)
    by G Gibson
    posted to mutationalrobustness by alexisgallagher on 2005-05-18 01:25:59 as **
  • How neutral networks influence evolvability
    Complex., Vol. 7, No. 2. (2001), pp. 19-33.
    by Marc Ebner, Mark Shackleton, Rob Shipman
    posted to evolvability importme neutralnetworks by alexisgallagher on 2005-05-18 00:49:43 as **
  • On the futility of blind search: an algorithmic view of "no free lunch".
    Evol Comput, Vol. 6, No. 2. (1998), pp. 109-127.
    by JC Culberson
    posted to evolutionarycomputation nofreelunch by alexisgallagher on 2005-05-18 00:27:51 as ** along with 1 person sdvillal
  • Adaptive Evolution on Neutral Networks
    Bulletin of Mathematical Biology, Vol. 63, No. 4. (July 2001), pp. 715-730.
    by CO Wilke
    posted to neutralnetworks by alexisgallagher on 2005-05-17 23:02:56 as **
  • Will Selection for Mutational Robustness Significantly Retard Evolutionary Innovation on Neutral Networks?
    (2002), pp. 192-201.
    by Seth Bullock
    edited by Standish, Abbass, Bedau
    posted to neutralnetworks by alexisgallagher on 2005-05-17 22:47:45 as **
  • A Universal Framework for Self-Replication
    Lecture Notes in Computer Science, Vol. 2801 (January 2003), pp. 1-9.
    by Bryant Adams, Hod Lipson
    posted to selfreplication by alexisgallagher on 2005-05-17 22:40:27 as **
  • Neutrality and self-adaptation
    Natural Computing, Vol. 2, No. 2. (June 2003), pp. 117-132.
    by Christian Igel, Marc Toussaint
    posted to neutralnetworks by alexisgallagher on 2005-05-17 20:54:17 as **
  • Statistical Properties of Neutral Evolution
    Journal of Molecular Evolution, Vol. 57, No. 0. (2003), pp. S103-S119.
    by Ugo Bastolla, Markus Porto, H Eduardo, Michele Vendruscolo
    posted to neutralnetworks by alexisgallagher on 2005-05-17 20:49:32 as ***
  • notes Evolution of mutational robustness.
    Mutat Res, Vol. 522, No. 1-2. (28 January 2003), pp. 3-11.
    by CO Wilke, C Adami
    posted to neutralnetworks by alexisgallagher on 2005-05-17 20:46:26 as ****
  • Molecular clock in neutral protein evolution.
    BMC Genet, Vol. 5, No. 1. (27 August 2004)
    by CO Wilke
    posted to molecularclock neutralnetworks by alexisgallagher on 2005-05-17 20:42:27 as ** along with 2 people and 1 group penka bluto Nie
  • Tierra's missing neutrality: case solved
    (2004), pp. 364-368.
    by R Standish
    edited by J Pollack
    posted to bibtex-import neutralnetworks by alexisgallagher on 2005-05-17 20:38:02 as ***
  • Neutrality in Technological Landscapes
    by Jose Lobo, John H Miller, Walter Fontana
    posted to neutralnetworks by alexisgallagher on 2005-05-17 20:32:57 as *
  • Modelling 'evo-devo' with RNA.
    Bioessays, Vol. 24, No. 12. (December 2002), pp. 1164-1177.
    by W Fontana
    posted to neutralnetworks rna by alexisgallagher on 2005-05-17 19:41:00 as ***** along with 3 people rklancer evaf eckart_bindewald
  • Local graph alignment and motif search in biological networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 41. (12 October 2004), pp. 14689-14694.
    by J Berg, M Lässig
    posted to graphs networks by alexisgallagher on 2005-05-12 17:59:32 as **** along with 3 people and 1 group Ema camster ssb dbk-lab
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