ana's library 517 articles Export

	Ras Conformational Switching: Simulating Nucleotide-Dependent Conformational Transitions with Accelerated Molecular Dynamics [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (20 March 2009), e1000325. by Barry J. Grant, Alemayehu A. Gorfe, Andrew J. Mccammon posted to no-tag by ana on 2009-03-25 23:40:24 as along with 2 people and 3 groups allmensch barry structural_bioinformatics McCammon Bioinformatics
	A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types [My Copy] Molecular Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350. by Olivier Elemento, Noam Slonim, Saeed Tavazoie posted to no-tag by ana on 2007-11-20 02:02:46 as along with 17 people and 2 groups cerca ilyashl TRHvidsten leelarcombe kieran101 brant cwbrown aswin cjeans zwang cabbagezs nklee maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
	Common aging pathways in worms, flies, mice and humans [My Copy] J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1607-1612. by Stuart K. Kim posted to no-tag by ana on 2007-11-20 01:58:51 as along with 2 people mkotlyar greg
	MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216. by Saurabh Sinha, Xin He posted to no-tag by ana on 2007-11-20 01:58:32 as along with 7 people and 2 groups dpollard cjeans zwang maximilianh hpaces Ema uwe EisenLab cis-regulatory-evolution
	The challenge of protein structure determination lessons from structural genomics [My Copy] Protein Sci, Vol. 16, No. 11. (1 November 2007), pp. 2472-2482. by Lukasz Slabinski, Lukasz Jaroszewski, Ana P. Rodrigues, et al.Leszek Rychlewski, Ian A. Wilson, Scott A. Lesley, Adam Godzik posted to jcsg structural_genomics target_selection by ana on 2007-11-05 18:39:24 as along with 3 people mkotlyar jwm rph
	Profile-based string kernels for remote homology detection and motif extraction. [My Copy] J Bioinform Comput Biol, Vol. 3, No. 3. (June 2005), pp. 527-550. by R. Kuang, E. Ie, K. Wang, et al.K. Wang, M. Siddiqi, Y. Freund, C. Leslie posted to new by ana on 2007-08-02 23:32:02 as along with 3 people and 2 groups barry chrn craigtalbert structural_bioinformatics Bioinformatics
	Activity of a C. elegans GATA transcription factor, ELT-1, expressed in yeast. [My Copy] J Mol Biol, Vol. 253, No. 5. (10 November 1995), pp. 665-676. by Y. H. Shim, J. J. Bonner, T. Blumenthal posted to new by ana on 2007-07-31 19:23:38 as along with 2 people and 3 groups thegoose2 tharris C. elegans / WormBase structural_bioinformatics Bioinformatics
	The evolutionary duplication and probable demise of an endodermal GATA factor in Caenorhabditis elegans. [My Copy] Genetics, Vol. 165, No. 2. (October 2003), pp. 575-588. by T. Fukushige, B. Goszczynski, H. Tian, J. D. McGhee posted to new by ana on 2007-07-31 19:22:05 as along with 2 people and 3 groups thegoose2 tharris C. elegans / WormBase structural_bioinformatics Bioinformatics
	Vector analysis as a fast and easy method to compare gene expression responses between different experimental backgrounds [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Rainer Breitling, Patrick Armengaud, Anna Amtmann posted to new by ana on 2007-07-23 04:33:08 as along with 1 person and 2 groups 0004573p structural_bioinformatics Bioinformatics
	Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster. [My Copy] Proc Natl Acad Sci U S A (31 July 2006) by Celine Moorman, Ling V V. Sun, Junbai Wang, et al.Elzo de Wit, Wendy Talhout, Lucas D D. Ward, Frauke Greil, Xiang-Jun J. Lu, Kevin P P. White, Harmen J J. Bussemaker, Bas van Steensel posted to new by ana on 2007-07-17 03:27:57 as along with 4 people and 4 groups indigoviolet xwbcn johncumbers wrowell structural_bioinformatics Bioinformatics EisenLab Cline_lab
	Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes [My Copy] Brief Bioinform (12 July 2007), bbm027. by Nikolay A. Kolchanov, Tatyana I. Merkulova, Elena V. Ignatieva, et al.Elena A. Ananko, Dmitry Y. Oshchepkov, Viktor G. Levitsky, Gennady V. Vasiliev, Nataly V. Klimova, Vasily M. Merkulov, T. Charles Hodgman posted to new by ana on 2007-07-16 21:26:56 as along with 5 people and 2 groups gotgenes wowalz GustavoLacerda cabbagezs xili03 structural_bioinformatics Bioinformatics
	The Evolution of Transcriptional Regulation in Eukaryotes [My Copy] Mol Biol Evol, Vol. 20, No. 9. (1 September 2003), pp. 1377-1419. by Gregory A. Wray, Matthew W. Hahn, Ehab Abouheif, et al.James P. Balhoff, Margaret Pizer, Matthew V. Rockman, Laura A. Romano posted to new by ana on 2007-07-16 21:25:14 as along with 11 people and 5 groups athma provero wrowell dpollard adepace nickluscombe anatiferous mimulus_99 cisevol emptyhb emmahe structural_bioinformatics Bioinformatics EisenLab EBI-regulation cis-regulatory-evolution
	Orchestrated response: a symphony of transcription factors for gene control. [My Copy] Genes Dev, Vol. 14, No. 20. (15 October 2000), pp. 2551-2569. by B. Lemon, R. Tjian posted to new by ana on 2007-07-16 21:25:09 as along with 3 people and 3 groups athma nickluscombe lusk structural_bioinformatics Bioinformatics EBI-regulation
	Analysis of computational approaches for motif discovery [My Copy] Algorithms for Molecular Biology, Vol. 1, No. 1. (19 May 2006), 8. by Nan Li, Martin Tompa posted to new by ana on 2007-07-07 19:41:31 as along with 11 people and 2 groups wowalz yevishere barry tuck chad_davis dquest lusk nklee maximilianh xi03 csdhwang structural_bioinformatics Bioinformatics
	Genomic cis-regulatory architecture and trans-acting regulators of a single interneuron-specific gene battery in C. elegans. [My Copy] Dev Cell, Vol. 6, No. 6. (June 2004), pp. 757-770. by A. S. Wenick, O. Hobert posted to new by ana on 2007-07-03 00:28:04 as along with 4 people and 3 groups thegoose2 tharris maximilianh blobbybirdman C. elegans / WormBase structural_bioinformatics Bioinformatics
	Predicting gene expression from sequence. [My Copy] Cell, Vol. 117, No. 2. (16 April 2004), pp. 185-198. by M. A. Beer, S. Tavazoie posted to new by ana on 2007-07-03 00:00:13 as along with 12 people and 6 groups rsaito thegoose2 winterschlaefer tharris xwbcn adepace nickluscombe noano koller jrest phoenixzxl klo TranscriptionalRegulationWithThermodynamicModels C. elegans / WormBase structural_bioinformatics Bioinformatics EisenLab EBI-regulation
	FoxA1 binding to the MMTV LTR modulates chromatin structure and transcription. [My Copy] Exp Cell Res, Vol. 304, No. 2. (1 April 2005), pp. 593-603. by P. H. Holmqvist, S. Belikov, K. S. Zaret, O. Wrange posted to new by ana on 2007-07-02 23:36:40 as along with 2 groups structural_bioinformatics Bioinformatics
	Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans [My Copy] Nature Biotechnology, Vol. 25, No. 6. (07 May 2007), pp. 663-668. by Denis Dupuy, Nicolas Bertin, César A. Hidalgo, et al.Kavitha Venkatesan, Domena Tu, David Lee, Jennifer Rosenberg, Nenad Svrzikapa, Aurélie Blanc, Alain Carnec, Anne-Ruxandra Carvunis, Rock Pulak, Jane Shingles, John Reece-Hoyes, Rebecca Hunt-Newbury, Ryan Viveiros, William A. Mohler, Murat Tasan, Frederick P. Roth, Christian Le Peuch, Ian A. Hope, Robert Johnsen, Donald G. Moerman, Albert-László Barabási, David Baillie, Marc Vidal posted to new by ana on 2007-07-02 23:33:08 as along with 5 people and 4 groups thegoose2 eetadic tharris brant Doug C. elegans / WormBase structural_bioinformatics Bioinformatics EisenLab
	A developmental timing microRNA and its target regulate life span in C. elegans. [My Copy] Science, Vol. 310, No. 5756. (23 December 2005), pp. 1954-1957. by M. Boehm, F. Slack posted to new by ana on 2007-07-02 23:32:46 as along with 4 people and 3 groups thegoose2 tharris eckart_bindewald tardigrade C. elegans / WormBase structural_bioinformatics Bioinformatics
	Comparative genomics of nematodes. [My Copy] Trends Genet, Vol. 21, No. 10. (October 2005), pp. 573-581. by M. Mitreva, M. L. Blaxter, D. M. Bird, J. P. McCarter posted to new by ana on 2007-07-02 23:09:12 as along with 2 people and 3 groups thegoose2 tharris C. elegans / WormBase structural_bioinformatics Bioinformatics
	Regulation of Organogenesis by the Caenorhabditis elegans FoxA Protein PHA-4 [My Copy] Science, Vol. 295, No. 5556. (1 February 2002), pp. 821-825. by J. Gaudet, S. E. Mango posted to new by ana on 2007-06-25 20:28:47 as along with 6 people and 4 groups thegoose2 tharris tardigrade postrational maximilianh Auger C. elegans / WormBase structural_bioinformatics Bioinformatics Dead 60's
	Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions. [My Copy] Genome research, Vol. 17, No. 6. (1 June 2007), pp. 787-797. by Zhengdong D. Zhang, Alberto Paccanaro, Yutao Fu, et al.Sherman Weissman, Zhiping Weng, Joseph Chang, Michael Snyder, Mark B. Gerstein posted to new by ana on 2007-06-14 18:55:20 as along with 9 people and 5 groups paccanarolab aprasad Borelli kengg ghattem epigenetics blobbybirdman inesdesantiago jasonflannick Paccanaro Lab structural_bioinformatics Bioinformatics Plantandetc UH - Computational Biology
	A global analysis of Caenorhabditis elegans operons [My Copy] Nature, Vol. 417, No. 6891. (20 June 2002), pp. 851-854. by Thomas Blumenthal, Donald Evans, Christopher D. Link, et al.Alessandro Guffanti, Daniel Lawson, Jean Thierry-Mieg, Danielle Thierry-Mieg, Wei L. Chiu, Kyle Duke, Moni Kiraly, Stuart K. Kim posted to new by ana on 2007-06-12 23:44:04 as along with 2 groups structural_bioinformatics Bioinformatics
	Genome organization: Teamed up for transcription [My Copy] Nature, Vol. 417, No. 6891. (20 June 2002), pp. 797-798. by Christian von Mering, Peer Bork posted to new by ana on 2007-06-12 23:41:46 as along with 2 groups structural_bioinformatics Bioinformatics
	Insulin/IGF Signaling and HNF-3/forkhead Proteins [My Copy] Science, Vol. 279, No. 5352. (6 February 1998), 783e. by Terry G. Unterman;, Kui Lin, Cynthia Kenyon posted to new by ana on 2007-06-09 03:28:06 as along with 2 groups structural_bioinformatics Bioinformatics
	daf-16: An HNF-3/forkhead family member that can function to double the life-span of Caenorhabditis elegans. [My Copy] Science, Vol. 278, No. 5341. (14 November 1997), pp. 1319-1322. by K. Lin, J. B. Dorman, A. Rodan, C. Kenyon posted to new by ana on 2007-06-09 03:22:09 as along with 3 people and 7 groups thegoose2 HEIRS tharris HEIRS Immunology and Autoimmune Diseases HEIRS - Environmental Illness Research HEIRS Cellular Biology HEIRS Adaptive Biology, Ecology and Evolution C. elegans / WormBase structural_bioinformatics Bioinformatics
	Transcription factors: structural families and principles of DNA recognition. [My Copy] Annu Rev Biochem, Vol. 61 (1992), pp. 1053-1095. by C. O. Pabo, R. T. Sauer posted to new by ana on 2007-06-08 02:56:43 as along with 3 people and 2 groups barry medic0747 uz_labu_laimi structural_bioinformatics Bioinformatics
	Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5. [My Copy] Nature, Vol. 364, No. 6436. (29 July 1993), pp. 412-420. by K. L. Clark, E. D. Halay, E. Lai, S. K. Burley posted to new by ana on 2007-06-08 02:55:14 as along with 2 groups structural_bioinformatics Bioinformatics
	The fork head domain: a novel DNA binding motif of eukaryotic transcription factors? [My Copy] Cell, Vol. 63, No. 3. (2 November 1990), pp. 455-456. by D. Weigel, H. Jäckle posted to new by ana on 2007-06-08 02:53:31 as along with 1 person and 2 groups jayster4 structural_bioinformatics Bioinformatics
	An evolutionary framework for the study of developmental evolution in a set of nematodes related to Caenorhabditis elegans. [My Copy] Mol Phylogenet Evol, Vol. 8, No. 2. (October 1997), pp. 249-259. by J. G. Baldwin, L. M. Frisse, J. T. Vida, C. D. Eddleman, W. K. Thomas posted to new by ana on 2007-06-06 01:19:54 as along with 2 people and 3 groups thegoose2 tharris C. elegans / WormBase structural_bioinformatics Bioinformatics
	A molecular evolutionary framework for the phylum Nematoda [My Copy] Nature, Vol. 392, No. 6671. (5 March 1998), pp. 71-75. by Mark L. Blaxter, Paul De Ley, James R. Garey, et al.Leo X. Liu, Patsy Scheldeman, Andy Vierstraete, Jacques R. Vanfleteren, Laura Y. Mackey, Mark Dorris, Linda M. Frisse, J. T. Vida, Kelley W. Thomas posted to new by ana on 2007-06-06 01:16:45 as along with 2 groups structural_bioinformatics Bioinformatics
	Caenorhabditis elegans is a nematode. [My Copy] Science, Vol. 282, No. 5396. (11 December 1998), pp. 2041-2046. by M. Blaxter posted to new by ana on 2007-06-06 01:14:35 as along with 3 people and 3 groups thegoose2 tharris tardigrade C. elegans / WormBase structural_bioinformatics Bioinformatics
	Conservation, Regulation, Synteny, and Introns in a Large-scale C. briggsae-C. elegans Genomic Alignment [My Copy] Genome Res., Vol. 10, No. 8. (1 August 2000), pp. 1115-1125. by James W. Kent, Alan M. Zahler posted to new by ana on 2007-06-06 01:08:06 as along with 3 people and 3 groups thegoose2 tharris wenhan C. elegans / WormBase structural_bioinformatics Bioinformatics
	Building a dictionary for genomes: Identification of presumptive regulatory sites by statistical analysis [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 18. (29 August 2000), pp. 10096-10100. by Harmen J. Bussemaker, Hao Li, Eric D. Siggia posted to new by ana on 2007-06-05 01:42:47 as along with 4 people and 2 groups marcio dquest johncumbers ep161302 structural_bioinformatics Bioinformatics
	Identification of the differential distribution patterns of mRNAs and consensus binding sequences for mouse DAF-16 homologues. [My Copy] Biochem J, Vol. 349, No. Pt 2. (15 July 2000), pp. 629-634. by T. Furuyama, T. Nakazawa, I. Nakano, N. Mori posted to new by ana on 2007-06-05 00:29:41 as along with 3 people and 3 groups thegoose2 tharris johncumbers C. elegans / WormBase structural_bioinformatics Bioinformatics
	DAF-16 target genes that control C. elegans life-span and metabolism. [My Copy] Science, Vol. 300, No. 5619. (25 April 2003), pp. 644-647. by S. S. Lee, S. Kennedy, A. C. Tolonen, G. Ruvkun posted to new by ana on 2007-06-05 00:22:35 as along with 3 people and 3 groups thegoose2 tharris johncumbers C. elegans / WormBase structural_bioinformatics Bioinformatics
	Transcriptional outputs of the Caenorhabditis elegans forkhead protein DAF-16 [My Copy] Aging Cell, Vol. 2, No. 2. (2003), pp. 111-121. by Joshua Mcelwee, Kerry Bubb, James H. Thomas posted to new by ana on 2007-06-05 00:20:05 as along with 1 person and 2 groups tardigrade structural_bioinformatics Bioinformatics
	SMK-1, an Essential Regulator of DAF-16-Mediated Longevity [My Copy] Cell, Vol. 124, No. 5. (10 March 2006), pp. 1039-1053. by Suzanne Wolff, Hui Ma, Denise Burch, Gustavo A. Maciel, Tony Hunter, Andrew Dillin posted to new by ana on 2007-06-05 00:16:05 as along with 2 groups structural_bioinformatics Bioinformatics
	Opposing activities protect against age-onset proteotoxicity. [My Copy] Science (New York, N.Y.), Vol. 313, No. 5793. (15 September 2006), pp. 1604-1610. by Ehud Cohen, Jan Bieschke, Rhonda M. Perciavalle, Jeffery W. Kelly, Andrew Dillin posted to abeta1-42 aging alzheimers daf-16 daf-2 hsf-1 promoter by ana on 2007-06-04 03:30:00 as along with 3 people and 3 groups bratwurst thegoose2 tharris C. elegans / WormBase structural_bioinformatics Bioinformatics
	PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. [My Copy] PLoS computational biology, Vol. 1, No. 7. (December 2005) by Rahul Siddharthan, Eric D. Siggia, Erik van Nimwegen posted to new by ana on 2007-06-02 04:04:46 as along with 17 people and 3 groups farhat wowalz aprasad cajunsushi treangen druvus postrational dquest AaronDarling nickluscombe noano adsmitty lusk lilou idonaldson yevishere isimpson structural_bioinformatics Bioinformatics EBI-regulation
	Applied bioinformatics for the identification of regulatory elements. [My Copy] Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287. by W. W. Wasserman, A. Sandelin posted to new by ana on 2007-06-02 04:03:24 as along with 18 people and 8 groups wowalz yas icases chad_davis moborg gpalidwor dchughes nickluscombe johncumbers giovanni xiaobeizhao bertelsen Stew nklee jdiezperezj ArtemPankin mariakmejia isimpson structural_bioinformatics Bioinformatics EisenLab G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling
	Structural Evolution of the Protein Kinase-Like Superfamily. [My Copy] PLoS Comput Biol, Vol. 1, No. 5. (21 October 2005) by Eric D D. Scheeff, Philip E E. Bourne posted to jcsg phylogenetics protein_sequence protein_structure by ana on 2007-06-02 03:59:29 as along with 4 people and 2 groups yuslinaz BragilMassoud anwazo renatomilani structural_bioinformatics Bioinformatics
	Divergent evolution within protein superfolds inferred from profile-based phylogenetics. [My Copy] Journal of molecular biology, Vol. 354, No. 3. (2 December 2005), pp. 722-737. by Douglas L. Theobald, Deborah S. Wuttke posted to jcsg phylogenetics protein_sequence protein_structure by ana on 2007-06-02 03:54:22 as along with 6 people and 4 groups martainn cmura yuslinaz barry dlr caporaso structural_bioinformatics Bioinformatics biomedical-nlp McCammon
	Practical strategies for discovering regulatory DNA sequence motifs. [My Copy] PLoS computational biology, Vol. 2, No. 4. (1 April 2006), e36. by K. D. MacIsaac, E. Fraenkel posted to new by ana on 2007-06-02 03:05:13 as along with 16 people and 2 groups leemond31 Dulce maximilianh heliopais daforerog natstreet druvus giovenko nuin bryankr chad_davis balicea hggr GustavoLacerda svdate kristallreiner structural_bioinformatics Bioinformatics
	Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans [My Copy] Nature, Vol. 424, No. 6946. (17 July 2003), pp. 277-283. by Coleen T. Murphy, Steven A. Mccarroll, Cornelia I. Bargmann, et al.Andrew Fraser, Ravi S. Kamath, Julie Ahringer, Hao Li, Cynthia Kenyon posted to new by ana on 2007-06-02 03:04:32 as along with 3 people and 3 groups thegoose2 tharris johncumbers C. elegans / WormBase structural_bioinformatics Bioinformatics
	SISYPHUS--structural alignments for proteins with non-trivial relationships. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by A. Andreeva, A. Prlić, T. J. Hubbard, A. G. Murzin posted to protein_structure structure_classification structure_comparison by ana on 2007-05-29 23:18:59 as along with 5 people and 2 groups timhubbard barry dgront massivemayhem martainn structural_bioinformatics Bioinformatics
	Protein families and TRIBES in genome sequence space. [My Copy] Nucleic Acids Res, Vol. 31, No. 15. (1 August 2003), pp. 4632-4638. by A. J. Enright, V. Kunin, C. A. Ouzounis posted to family-size jcsg by ana on 2007-05-22 01:51:20 as along with 1 person and 2 groups tmmurali structural_bioinformatics Bioinformatics
	Scaling law in sizes of protein sequence families: from super-families to orphan genes. [My Copy] Proteins, Vol. 51, No. 4. (1 June 2003), pp. 569-576. by R. Unger, S. Uliel, S. Havlin posted to family-size jcsg by ana on 2007-05-22 01:26:14 as along with 2 groups structural_bioinformatics Bioinformatics
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to promoter_finding transcription_factor by ana on 2007-05-22 01:12:46 as along with 38 people and 6 groups mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
	Comparative genomics in C. elegans, C. briggsae, and other Caenorhabditis species. [My Copy] Methods Mol Biol, Vol. 351 (2006), pp. 13-29. by A. Coghlan, J. E. Stajich, T. W. Harris posted to celegans comparative_genomics by ana on 2007-05-22 00:47:14 as along with 2 people and 3 groups thegoose2 tharris C. elegans / WormBase structural_bioinformatics Bioinformatics

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protein_structure	195
structure_comparison	99
protein_sequence	44
jcsg	43
protein_evolution	43
structure_alignment	38
new	37
interaction_hierarchy	29
comparative_genomics	28
sequence_comparison	26
virulence_factor	24
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structure_prediction	23
split-barrel	21
protein_folding	20
structure_flexible	20
contact_maps	19
indels	17
protein_function	17
hgt	16
project	16
streptococcus	16
web_server	15
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benchmark	13
fold_space	13
minimal_genome	13
protein_interaction	13
protein_universe	13
scop-b-45-1-1	12
structure_superposition	12
essential_genes	11
target_selection	11
malaria	10
molecular_mimicry	10
pca	10
sequence_alignment	10
genome_evolution	9
phylogeny	9
protein_dynamics	9
sequence_structure	9
algorithms	8
comparative_modeling	8
homology_analogy	8
metagenomics	7
bioinformatics	6
core_genome	6
function_evolution	6
function_prediction	6
multiple_structure_comparison	6
nma	6
orthology	6
statistical_coupling_analysis	6
structure_core	6
book	5
contact_order	5
correlated_mutations	5
hydrogen-bond	5
molecular_dynamics	5
packing_density	5
power-law	5
protein_design	5
protein_stability	5
contact_prediction	4
family-size	4
flexible_structure_alignment	4
gene_finding	4
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model_refinement	4
multiple_sequence_alignment	4
promoter_identification	4
r	4
scop-b-45-1-1-pre	4
score	4
statistics	4
barrel	3
evolution	3
gene_duplication	3
mine	3
multiple_structure_alignment	3
neofunctionalization	3
scop-b-45-1-2	3
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stochastic_process	3
celegans	2
classification	2
crohns_disease	2
crystalization	2
directed_evolution	2
flavoenzymes	2
genome_sequence	2
graph_theory	2
hmm	2
local_interaction	2
loop	2
microarray	2
multi-domain	2
neural_networks	2
pathogenicity_island	2
pathway-genome_annotation	2
phylogenetics	2
protein_disorder	2
protein_expression	2
protein_moonlighting	2
remote_homology	2
scop-b-43-4	2
secondary_structure	2
structure_fragments	2
taxonomy	2
ubiquitination	2
water-mediated_contacts	2
abeta1-42	1
active_site	1
adaptive_evolution	1
afp	1
aging	1
allosteric	1
alzheimers	1
base_composition	1
codon_bias	1
daf-16	1
daf-2	1
database	1
data_mining	1
dataset	1
ddm	1
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dna	1
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dynamic_programming	1
family_analysis	1
ferredoxin-reductase-fad-binding	1
ferrodoxin-reductase-fad-binding	1
gene_ontology	1
genome_size	1
glycerol_kinase	1
hinge_bend	1
hsf-1	1
hydrophobic_effect	1
kogs	1
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luca	1
modeling	1
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potential	1
prion	1
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promoter_finding	1
pseudogene	1
repeats	1
scop-b-45	1
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scoring_matrix	1
software_development	1
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structure_determination	1
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subcellular_localization	1
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threading	1
transcription_factor	1
tree_of_life	1
visualization	1
weibull_function	1

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