analogAI's library 73 articles Export

	Plasmid vectors for selecting IS1-promoted deletions in cloned DNA: sequence analysis of the omega interposon. [My Copy] Gene, Vol. 103, No. 1. (15 July 1991), pp. 17-23. by P. Prentki, A. Binda, A. Epstein posted to interposon omega by analogAI on 2008-08-14 00:33:57 as
	Cyanobacterial leader peptides for protein secretion [My Copy] FEMS Microbiology Letters, Vol. 218, No. 2. (2003), pp. 351-357. by Tatiana V. Sergeyenko, Dmitry A. Los posted to glucanase lichenase pcc6803 signalprotein by analogAI on 2008-06-27 11:11:41 as
	Synechocystis PCC6803: a euryhaline cyanobacterium [My Copy] FEMS Microbiology Letters, Vol. 18, No. 1-2. (1983), pp. 99-102. by D. L. Richardson, R. H. Reed, W. D. P. Stewart posted to growth halotolerance pcc6803 by analogAI on 2008-06-24 22:28:54 as
	Conjugative transfer and autonomous replication of a promiscuous IncQ plasmid in the cyanobacterium Synechocystis PCC 6803 [My Copy] Molecular and General Genetics MGG, Vol. 221, No. 1. (1 March 1990), pp. 129-133. by Sabine Kreps, Fabrice Ferino, Christine Mosrin, Jozef Gerits, Max Mergeay, Pierre Thuriaux posted to pcc6803 plasmid transformation by analogAI on 2008-06-09 08:49:40 as
	A host-vector system for gene cloning in the cyanobacterium Synechocystis PCC 6803 [My Copy] Molecular and General Genetics MGG, Vol. 204, No. 1. (1 July 1986), pp. 185-191. by F. Chauvat, L. Vries, A. Ende, G. A. Arkel posted to pcc6803 transformation by analogAI on 2008-06-09 07:10:46 as
	Engineering BioBrick vectors from BioBrick parts [My Copy] Journal of Biological Engineering, Vol. 2, No. 5. (14 April 2008) by Reshma P. Shetty, Drew Endy, Thomas F. Knight posted to biobrick transformation vector by analogAI on 2008-05-06 05:32:54 as
	On the Rate of Diatom Growth [My Copy] Journal of the Marine Biological Association of the United Kingdom, Vol. 19, No. 1. (1933), pp. 253-276. by H. W. Harvey posted to clostorium_nitzschia diatom by analogAI on 2006-11-26 23:28:34 as
	CO2 fixation and ethanol production with microalgal photosynthesis and intracellular anaerobic fermentation [My Copy] pp. 137-142. by A. Hirano posted to chlamydomonas_reinhardtii chlorella_vulgaris ethanol green_algae by analogAI on 2006-11-04 07:56:24 as
	Specificity grafting of human antibody frameworks selected from a phage display library: generation of a highly stable humanized anti-CD22 single-chain Fv fragment [My Copy] Protein Eng., Vol. 16, No. 10. (1 October 2003), pp. 753-759. by Jurgen Krauss, Michaela A. Arndt, Andrew C. Martin, Huaitian Liu, Susanna M. Rybak posted to protein-engineering protein-stability by analogAI on 2006-08-22 20:37:14 as
	Identification of differences in the specificity-determining residues of antibodies that recognize antigens of different size: implications for the rational design of antibody repertoires. [My Copy] J Mol Recognit, Vol. 17, No. 2. (r 2004), pp. 132-143. by J. C. Almagro posted to immunoglobulin proteinrecognition by analogAI on 2006-08-22 20:30:24 as
	Finding important sites in protein sequences [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 23. (12 November 2002), pp. 14764-14771. by Peter J. Bickel, Katherina J. Kechris, Philip C. Spector, Gary J. Wedemayer, Alexander N. Glazer posted to informationtheory residue-covariation by analogAI on 2006-08-04 02:38:46 as along with 4 people qluo RebeccaHamer nickolay sriram_s
	Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: an information theoretic analysis. [My Copy] Proc Natl Acad Sci U S A, Vol. 90, No. 15. (1 August 1993), pp. 7176-7180. by B. T. Korber, R. M. Farber, D. H. Wolpert, A. S. Lapedes posted to informationtheory residue-covariation by analogAI on 2006-08-04 02:34:46 as along with 1 person min013
	Covariability of V3 loop amino acids. [My Copy] AIDS Res Hum Retroviruses, Vol. 12, No. 15. (10 October 1996), pp. 1401-1411. by P. J. Bickel, P. C. Cosman, R. A. Olshen, P. C. Spector, A. G. Rodrigo, J. I. Mullins posted to informationtheory residue-covariation by analogAI on 2006-08-04 02:34:07 as
	Finding the fittest fold: using the evolutionary record to design new proteins. [My Copy] Cell, Vol. 122, No. 6. (23 September 2005), pp. 832-834. by R. G. Smock, L. M. Gierasch posted to caig protein-structure proteinfolding residue-covariation by analogAI on 2006-07-05 08:27:59 as along with 2 people and 3 groups marcius caporaso biomedical-nlp BioinfoCIPF SGU-CIPF
	Gaps in structurally similar proteins: towards improvement of multiple sequence alignment. [My Copy] Proteins, Vol. 54, No. 1. (1 January 2004), pp. 71-87. by J. O. Wrabl, N. V. Grishin posted to protein-sequence sequencealignment structuralalignment by analogAI on 2006-06-29 05:45:12 as along with 4 people and 2 groups j3xucite ana barry granujilla structural_bioinformatics Bioinformatics
	Stability improvement of antibodies for extracellular and intracellular applications: CDR grafting to stable frameworks and structure-based framework engineering. [My Copy] Methods, Vol. 34, No. 2. (October 2004), pp. 184-199. by S. Ewert, A. Honegger, A. Plückthun posted to cdr immunoglobulin protein-engineering protein-stability protein-structure residue-covariation review-article by analogAI on 2006-06-03 07:07:31 as
	Engineering novel binding proteins from nonimmunoglobulin domains [My Copy] Nature Biotechnology, Vol. 23, No. 10. (06 October 2005), pp. 1257-1268. by Kaspar H. Binz, Patrick Amstutz, Andreas Plückthun posted to immunoglobulin protein-engineering proteinrecognition by analogAI on 2006-06-03 06:55:34 as
	Protein secondary structure: entropy, correlations and prediction. [My Copy] Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1603-1611. by G. E. Crooks, S. E. Brenner posted to informationtheory protein-structure residue-covariation by analogAI on 2006-05-05 20:58:37 as along with 2 people and 1 group zambujo Einat structural_bioinformatics
	Improving contact predictions by the combination of correlated mutations and other sources of sequence information. [My Copy] Folding & design, Vol. 2, No. 3. (1997) by O. Olmea, A. Valencia posted to protein-structure residue-covariation by analogAI on 2006-05-05 05:31:43 as along with 2 people qluo RebeccaHamer
	A graphical interface for correlated mutations and other protein structure prediction methods. [My Copy] Comput Appl Biosci, Vol. 13, No. 3. (June 1997), pp. 319-321. by F. Pazos, O. Olmea, A. Valencia posted to protein-structure residue-covariation by analogAI on 2006-05-05 05:18:52 as
	Correlated mutations and residue contacts in proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 18, No. 4. (April 1994), pp. 309-317. by Ulrike Göbel, Chris Sander, Reinhard Schneider, Alfonso Valencia posted to protein-sequence residue-covariation by analogAI on 2006-05-05 04:59:39 as along with 9 people mgomes qluo RebeccaHamer mcbla gbart dgront cjeans jteyra Lombardo_7
	Native protein sequences are close to optimal for their structures [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 19. (12 September 2000), pp. 10383-10388. by Brian Kuhlman, David Baker posted to protein-structure residue-covariation by analogAI on 2006-05-05 04:56:03 as along with 2 people jwm gisle
	Stabilization centers in proteins: identification, characterization and predictions. [My Copy] J Mol Biol, Vol. 272, No. 4. (3 October 1997), pp. 597-612. by Z. Dosztányi, A. Fiser, I. Simon posted to protein-stability protein-structure residue-covariation by analogAI on 2005-12-21 05:55:53 as along with 1 person and 1 group Einat structural_bioinformatics
	Simulating protein evolution in sequence and structure space. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 202-207. by Y. Xia, M. Levitt posted to computer-simulation protein-sequence protein-structure proteinfolding by analogAI on 2005-12-21 05:11:20 as along with 13 people and 4 groups idoerg yuslinaz saunders betainverse korakot mdimmic karbak rmj001 ana barry aalibes gbart insectopalo Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics
	The identification of conserved interactions within the SH3 domain by alignment of sequences and structures. [My Copy] Protein Sci, Vol. 9, No. 11. (November 2000), pp. 2170-2180. by S. M. Larson, A. R. Davidson posted to protein-structure residue-covariation by analogAI on 2005-12-21 03:57:38 as
	Evolutionarily conserved networks of residues mediate allosteric communication in proteins [My Copy] Nature Structural & Molecular Biology, Vol. 10, No. 1. (16 December 2002), pp. 59-69. by Gurol M. Suel, Steve W. Lockless, Mark A. Wall, Rama Ranganathan posted to protein-structure residue-covariation by analogAI on 2005-12-21 03:52:53 as along with 20 people and 3 groups mgomes qluo arjun_citeulike RebeccaHamer ynaito lna dimka marcius eckart_bindewald gbart nirfriedman dgront caporaso choonpeng efge carlescorbi mingzhi yalexeev weisblum ca3295 biomedical-nlp BioinfoCIPF SGU-CIPF
	Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions. [My Copy] J Mol Biol, Vol. 303, No. 3. (27 October 2000), pp. 433-446. by S. M. Larson, A. A. Di Nardo, A. R. Davidson posted to protein-structure residue-covariation by analogAI on 2005-12-21 03:50:29 as along with 6 people and 2 groups ana gbart Haggan cjeans tale bethbromley structural_bioinformatics Bioinformatics
	Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families [My Copy] Science, Vol. 286, No. 5438. (8 October 1999), pp. 295-299. by Steve W. Lockless, Rama Ranganathan posted to protein-structure residue-covariation by analogAI on 2005-12-21 03:34:47 as along with 17 people and 6 groups mgomes qluo stevanspringer Einat marcius eckart_bindewald dgront caporaso sriram_s choonpeng Haggan rabio mottonen zambujo mingzhi bethbromley ca3295 Marcotte_Lab structural_bioinformatics FAB-lab biomedical-nlp BioinfoCIPF SGU-CIPF
	Information content of individual genetic sequences. [My Copy] J Theor Biol, Vol. 189, No. 4. (21 December 1997), pp. 427-441. by T. D. Schneider posted to informationtheory sequencealignment statistics by analogAI on 2005-12-16 03:44:49 as
	Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. [My Copy] Comput Appl Biosci, Vol. 12, No. 4. (August 1996), pp. 327-345. by K. Sjölander, K. Karplus, M. Brown, et al.R. Hughey, A. Krogh, I. S. Mian, D. Haussler posted to sequencealignment statistics by analogAI on 2005-12-16 03:31:32 as along with 1 person kumar_physics
	Position-based sequence weights. [My Copy] J Mol Biol, Vol. 243, No. 4. (4 November 1994), pp. 574-578. by S. Henikoff, J. G. Henikoff posted to sequencealignment by analogAI on 2005-12-15 00:16:53 as along with 1 person and 1 group Einat structural_bioinformatics
	FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. [My Copy] J Mol Biol, Vol. 310, No. 1. (29 June 2001), pp. 243-257. by J. Shi, T. L. Blundell, K. Mizuguchi posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-12-03 00:21:11 as along with 8 people and 1 group semin j3xucite miguel bicko massivemayhem medic0747 sebk TOchi OPIG
	Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels. [My Copy] Proteins, Vol. 14, No. 2. (October 1992), pp. 309-323. by R. B. Russell, G. J. Barton posted to protein-structure structuralalignment by analogAI on 2005-12-01 01:07:46 as along with 3 people mijam chad_davis jefferlyemerson
	Multiple structural alignment by secondary structures: algorithm and applications. [My Copy] Protein Sci, Vol. 12, No. 11. (November 2003), pp. 2492-2507. by O. Dror, H. Benyamini, R. Nussinov, H. J. Wolfson posted to protein-structure structuralalignment by analogAI on 2005-12-01 00:02:06 as along with 2 people ziquje dimka
	The immunoglobulin fold family: sequence analysis and 3D structure comparisons. [My Copy] Protein Eng, Vol. 12, No. 7. (July 1999), pp. 563-571. by D. M. Halaby, A. Poupon, J. Mornon posted to immunoglobulin proteinfolding proteinrecognition by analogAI on 2005-11-29 05:49:42 as along with 1 person and 1 group stevanspringer FAB-lab
	Determining the roles of different chain fragments in recognition of immunoglobulin fold [My Copy] Protein Eng., Vol. 15, No. 1. (1 January 2002), pp. 13-19. by B. Reva, A. Kister, S. Topiol, I. Gelfand posted to immunoglobulin protein-structure proteinfolding by analogAI on 2005-11-29 05:47:58 as
	The importance of loop length in the folding of an immunoglobulin domain [My Copy] Protein Engineering, Design and Selection, Vol. 17, No. 5. (1 May 2004), pp. 443-453. by Caroline F. Wright, John Christodoulou, Christopher M. Dobson, Jane Clarke posted to immunoglobulin protein-structure proteinfolding by analogAI on 2005-11-29 05:46:21 as
	A method for simultaneous alignment of multiple protein structures. [My Copy] Proteins, Vol. 56, No. 1. (1 July 2004), pp. 143-156. by M. Shatsky, R. Nussinov, H. J. Wolfson posted to protein-structure structuralalignment by analogAI on 2005-11-28 05:22:26 as along with 5 people tomjad nachtalp j3xucite carlescorbi kgutwin
	HMM Logos for visualization of protein families. [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (21 January 2004), 7. by Benjamin Schuster-Böckler, Jörg Schultz, Sven Rahmann posted to sequencelogos by analogAI on 2005-11-24 10:29:13 as along with 2 people BioNica pansapiens
	Sequence logos: a new way to display consensus sequences. [My Copy] Nucleic acids research, Vol. 18, No. 20. (25 October 1990), pp. 6097-6100. by T. D. Schneider, R. M. Stephens posted to sequencelogos by analogAI on 2005-11-24 10:27:39 as along with 8 people and 1 group mgomes GustavoLacerda stubrown calderonv hplatero indigoviolet yevishere austin EisenLab
	WebLogo: a sequence logo generator. [My Copy] Genome research, Vol. 14, No. 6. (1 June 2004), pp. 1188-1190. by Gavin E. Crooks, Gary Hon, John-Marc M. Chandonia, Steven E. Brenner posted to sequencelogos by analogAI on 2005-11-24 10:25:50 as along with 15 people and 2 groups daforerog ramonvidal gwallau ivankel dsmueller GustavoLacerda rpetrenko calderonv hplatero dfgreen Mehlhorn indigoviolet xiaobeizhao sobolevnrm yevishere EisenLab baker-group
	Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming. [My Copy] J Mol Biol, Vol. 212, No. 2. (20 March 1990), pp. 403-428. by A. Sali, T. L. Blundell posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-11-24 01:00:06 as along with 1 person bicko
	An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments. [My Copy] J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 691-711. by A. S. Yang, B. Honig posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-11-23 23:47:02 as
	An integrated approach to the analysis and modeling of protein sequences and structures. II. On the relationship between sequence and structural similarity for proteins that are not obviously related in sequence. [My Copy] J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 679-689. by A. S. Yang, B. Honig posted to protein-structure structuralalignment by analogAI on 2005-11-23 23:46:13 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance. [My Copy] J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 665-678. by A. S. Yang, B. Honig posted to protein-structure structuralalignment by analogAI on 2005-11-23 23:40:39 as along with 2 people and 2 groups ana dimka structural_bioinformatics Bioinformatics
	An attempt to define allergen-specific molecular surface features: a bioinformatic approach [My Copy] Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4201-4204. by Ruta Furmonaviciene, Brian J. Sutton, Fabian Glaser, et al.Charlie A. Laughton, Nick Jones, Herb F. Sewell, Farouk Shakib posted to allergy protein-structure proteinrecognition by analogAI on 2005-11-23 08:25:09 as
	The biology of IGE and the basis of allergic disease. [My Copy] Annu Rev Immunol, Vol. 21 (2003), pp. 579-628. by H. J. Gould, B. J. Sutton, A. J. Beavil, et al.R. L. Beavil, N. McCloskey, H. A. Coker, D. Fear, L. Smurthwaite posted to allergy ige immunoglobulin review-article by analogAI on 2005-11-23 07:59:51 as
	Frequency of gaps observed in a structurally aligned protein pair database suggests a simple gap penalty function [My Copy] Nucl. Acids Res., Vol. 32, No. 9. (20 May 2004), pp. 2838-2843. by Nalin C. Goonesekere, Byungkook Lee posted to protein-structure structuralalignment by analogAI on 2005-11-22 02:43:01 as along with 2 people and 2 groups j3xucite ana structural_bioinformatics Bioinformatics
	Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. [My Copy] Protein Eng, Vol. 11, No. 9. (September 1998), pp. 739-747. by I. N. Shindyalov, P. E. Bourne posted to protein-structure structuralalignment by analogAI on 2005-11-22 02:42:03 as along with 11 people and 2 groups medic0747 sebk reyez pjcite nigham jwm dgront rabio siebertm Inchoate sim82 Radiation_Damage Stressosome
	MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. [My Copy] Protein science : a publication of the Protein Society, Vol. 11, No. 11. (1 November 2002), pp. 2606-2621. by Angel R. Ortiz, Charlie E. Strauss, Osvaldo Olmea posted to protein-structure structuralalignment by analogAI on 2005-11-19 02:09:13 as along with 8 people and 2 groups tomjad awarlau ana iakes dimka jwm sebk tjimenez structural_bioinformatics Bioinformatics

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protein-structure	45
structuralalignment	23
residue-covariation	16
immunoglobulin	11
sequencealignment	8
proteinfolding	6
informationtheory	5
proteinrecognition	5
pcc6803	4
review-article	4
cdr	3
protein-engineering	3
protein-sequence	3
protein-stability	3
sequencelogos	3
transformation	3
allergy	2
disulfides	2
statistics	2
behavior	1
biobrick	1
caig	1
chlamydomonas_reinhardtii	1
chlorella_vulgaris	1
cichlid	1
clostorium_nitzschia	1
computer-simulation	1
diatom	1
ethanol	1
geneexpression	1
glucanase	1
green_algae	1
growth	1
halotolerance	1
ige	1
interposon	1
lichenase	1
omega	1
plasmid	1
signalprotein	1
smallmolecule	1
vector	1

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