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	Correlated mutations and residue contacts in proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 18, No. 4. (April 1994), pp. 309-317. by Ulrike Göbel, Chris Sander, Reinhard Schneider, Alfonso Valencia posted to protein-sequence residue-covariation by analogAI on 2006-05-05 04:59:39 as along with 9 people mgomes qluo RebeccaHamer mcbla gbart dgront cjeans jteyra Lombardo_7
	The identification of conserved interactions within the SH3 domain by alignment of sequences and structures. [My Copy] Protein Sci, Vol. 9, No. 11. (November 2000), pp. 2170-2180. by S. M. Larson, A. R. Davidson posted to protein-structure residue-covariation by analogAI on 2005-12-21 03:57:38 as
	Evolutionarily conserved networks of residues mediate allosteric communication in proteins [My Copy] Nature Structural & Molecular Biology, Vol. 10, No. 1. (16 December 2002), pp. 59-69. by Gurol M. Suel, Steve W. Lockless, Mark A. Wall, Rama Ranganathan posted to protein-structure residue-covariation by analogAI on 2005-12-21 03:52:53 as along with 20 people and 3 groups mgomes qluo arjun_citeulike RebeccaHamer ynaito lna dimka marcius eckart_bindewald gbart nirfriedman dgront caporaso choonpeng efge carlescorbi mingzhi yalexeev weisblum ca3295 biomedical-nlp BioinfoCIPF SGU-CIPF
	Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions. [My Copy] J Mol Biol, Vol. 303, No. 3. (27 October 2000), pp. 433-446. by S. M. Larson, A. A. Di Nardo, A. R. Davidson posted to protein-structure residue-covariation by analogAI on 2005-12-21 03:50:29 as along with 6 people and 2 groups ana gbart Haggan cjeans tale bethbromley structural_bioinformatics Bioinformatics
	Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families [My Copy] Science, Vol. 286, No. 5438. (8 October 1999), pp. 295-299. by Steve W. Lockless, Rama Ranganathan posted to protein-structure residue-covariation by analogAI on 2005-12-21 03:34:47 as along with 17 people and 6 groups mgomes qluo stevanspringer Einat marcius eckart_bindewald dgront caporaso sriram_s choonpeng Haggan rabio mottonen zambujo mingzhi bethbromley ca3295 Marcotte_Lab structural_bioinformatics FAB-lab biomedical-nlp BioinfoCIPF SGU-CIPF
	Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels. [My Copy] Proteins, Vol. 14, No. 2. (October 1992), pp. 309-323. by R. B. Russell, G. J. Barton posted to protein-structure structuralalignment by analogAI on 2005-12-01 01:07:46 as along with 3 people mijam chad_davis jefferlyemerson
	A method for simultaneous alignment of multiple protein structures. [My Copy] Proteins, Vol. 56, No. 1. (1 July 2004), pp. 143-156. by M. Shatsky, R. Nussinov, H. J. Wolfson posted to protein-structure structuralalignment by analogAI on 2005-11-28 05:22:26 as along with 5 people tomjad nachtalp j3xucite carlescorbi kgutwin
	An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments. [My Copy] J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 691-711. by A. S. Yang, B. Honig posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-11-23 23:47:02 as
	Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. [My Copy] Protein Eng, Vol. 11, No. 9. (September 1998), pp. 739-747. by I. N. Shindyalov, P. E. Bourne posted to protein-structure structuralalignment by analogAI on 2005-11-22 02:42:03 as along with 11 people and 2 groups medic0747 sebk reyez pjcite nigham jwm dgront rabio siebertm Inchoate sim82 Radiation_Damage Stressosome
	Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions [My Copy] Acta Crystallographica Section D: Biological Crystallography, Vol. 60, No. 1. (01 December 2004), pp. 2256-2268. by Krissinel, E., Henrick, K. posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:51:43 as along with 3 people and 4 groups barry jwm robert structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
	LGA: A method for finding 3D similarities in protein structures. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3370-3374. by A. Zemla posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:42:19 as along with 3 people and 2 groups karbak ana vavi structural_bioinformatics Bioinformatics
	Protein structure alignment using environmental profiles [My Copy] Protein Eng., Vol. 13, No. 8. (1 August 2000), pp. 535-543. by Jongsun Jung, Byungkook Lee posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:33:31 as
	Protein structure comparison using the markov transition model of evolution. [My Copy] Proteins, Vol. 41, No. 1. (1 October 2000), pp. 108-122. by T. Kawabata, K. Nishikawa posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:28:02 as along with 1 person nigham
	Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. [My Copy] Protein Sci, Vol. 13, No. 7. (July 2004), pp. 1865-1874. by V. A. Ilyin, A. Abyzov, C. M. Leslin posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:19:04 as along with 3 people and 2 groups medic0747 reyez ana structural_bioinformatics Bioinformatics
	Multiple flexible structure alignment using partial order graphs [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2362-2369. by Yuzhen Ye, Adam Godzik posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:15:26 as along with 2 people ubcg08l irenas
	Evolutionarily conserved pathways of energetic connectivity in protein families. [My Copy] Science, Vol. 286, No. 5438. (8 October 1999), pp. 295-299. by S. W. Lockless, R. Ranganathan posted to protein-structure residue-covariation by analogAI on 2005-11-16 18:46:35 as along with 2 people lna gbart
	Finding important sites in protein sequences [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 23. (12 November 2002), pp. 14764-14771. by Peter J. Bickel, Katherina J. Kechris, Philip C. Spector, Gary J. Wedemayer, Alexander N. Glazer posted to informationtheory residue-covariation by analogAI on 2006-08-04 02:38:46 as along with 4 people qluo RebeccaHamer nickolay sriram_s
	Gaps in structurally similar proteins: towards improvement of multiple sequence alignment. [My Copy] Proteins, Vol. 54, No. 1. (1 January 2004), pp. 71-87. by J. O. Wrabl, N. V. Grishin posted to protein-sequence sequencealignment structuralalignment by analogAI on 2006-06-29 05:45:12 as along with 4 people and 2 groups j3xucite ana barry granujilla structural_bioinformatics Bioinformatics
	Stabilization centers in proteins: identification, characterization and predictions. [My Copy] J Mol Biol, Vol. 272, No. 4. (3 October 1997), pp. 597-612. by Z. Dosztányi, A. Fiser, I. Simon posted to protein-stability protein-structure residue-covariation by analogAI on 2005-12-21 05:55:53 as along with 1 person and 1 group Einat structural_bioinformatics
	Simulating protein evolution in sequence and structure space. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 202-207. by Y. Xia, M. Levitt posted to computer-simulation protein-sequence protein-structure proteinfolding by analogAI on 2005-12-21 05:11:20 as along with 13 people and 4 groups idoerg yuslinaz saunders betainverse korakot mdimmic karbak rmj001 ana barry aalibes gbart insectopalo Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics
	An integrated approach to the analysis and modeling of protein sequences and structures. II. On the relationship between sequence and structural similarity for proteins that are not obviously related in sequence. [My Copy] J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 679-689. by A. S. Yang, B. Honig posted to protein-structure structuralalignment by analogAI on 2005-11-23 23:46:13 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance. [My Copy] J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 665-678. by A. S. Yang, B. Honig posted to protein-structure structuralalignment by analogAI on 2005-11-23 23:40:39 as along with 2 people and 2 groups ana dimka structural_bioinformatics Bioinformatics
	Frequency of gaps observed in a structurally aligned protein pair database suggests a simple gap penalty function [My Copy] Nucl. Acids Res., Vol. 32, No. 9. (20 May 2004), pp. 2838-2843. by Nalin C. Goonesekere, Byungkook Lee posted to protein-structure structuralalignment by analogAI on 2005-11-22 02:43:01 as along with 2 people and 2 groups j3xucite ana structural_bioinformatics Bioinformatics
	MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. [My Copy] Protein science : a publication of the Protein Society, Vol. 11, No. 11. (1 November 2002), pp. 2606-2621. by Angel R. Ortiz, Charlie E. Strauss, Osvaldo Olmea posted to protein-structure structuralalignment by analogAI on 2005-11-19 02:09:13 as along with 8 people and 2 groups tomjad awarlau ana iakes dimka jwm sebk tjimenez structural_bioinformatics Bioinformatics
	Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins [My Copy] Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 1010-1019. by Yuan Xin, Bystroff Christopher posted to protein-structure structuralalignment by analogAI on 2005-11-19 02:07:51 as
	Structural Bioinformatics (Methods of Biochemical Analysis) [My Copy] (24 February 2003) posted to protein-structure review-article by analogAI on 2005-11-19 01:30:45 as along with 1 person npt11tpn
	MultiProt - A Multiple Protein Structural Alignment Algorithm [My Copy] In WABI '02: Proceedings of the Second International Workshop on Algorithms in Bioinformatics, Vol. 2452 (2002), pp. 235-250. by Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson posted to protein-structure structuralalignment by analogAI on 2005-11-12 00:00:45 as
	How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins. [My Copy] J Mol Biol, Vol. 136, No. 3. (25 January 1980), pp. 225-270. by A. M. Lesk, C. Chothia posted to protein-structure by analogAI on 2005-11-11 22:22:29 as along with 1 person and 1 group Einat structural_bioinformatics
	HMM Logos for visualization of protein families. [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (21 January 2004), 7. by Benjamin Schuster-Böckler, Jörg Schultz, Sven Rahmann posted to sequencelogos by analogAI on 2005-11-24 10:29:13 as along with 2 people BioNica pansapiens
	Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming. [My Copy] J Mol Biol, Vol. 212, No. 2. (20 March 1990), pp. 403-428. by A. Sali, T. L. Blundell posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-11-24 01:00:06 as along with 1 person bicko
	A new progressive-iterative algorithm for multiple structure alignment [My Copy] Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3255-3263. by Dmitry Lupyan, Alejandra Leo-Macias, Angel R. Ortiz posted to protein-structure structuralalignment by analogAI on 2005-11-12 01:27:23 as along with 3 people and 2 groups ana dimka insectopalo structural_bioinformatics Bioinformatics
	Plasmid vectors for selecting IS1-promoted deletions in cloned DNA: sequence analysis of the omega interposon. [My Copy] Gene, Vol. 103, No. 1. (15 July 1991), pp. 17-23. by P. Prentki, A. Binda, A. Epstein posted to interposon omega by analogAI on 2008-08-14 00:33:57 as
	Cyanobacterial leader peptides for protein secretion [My Copy] FEMS Microbiology Letters, Vol. 218, No. 2. (2003), pp. 351-357. by Tatiana V. Sergeyenko, Dmitry A. Los posted to glucanase lichenase pcc6803 signalprotein by analogAI on 2008-06-27 11:11:41 as
	Synechocystis PCC6803: a euryhaline cyanobacterium [My Copy] FEMS Microbiology Letters, Vol. 18, No. 1-2. (1983), pp. 99-102. by D. L. Richardson, R. H. Reed, W. D. P. Stewart posted to growth halotolerance pcc6803 by analogAI on 2008-06-24 22:28:54 as
	Conjugative transfer and autonomous replication of a promiscuous IncQ plasmid in the cyanobacterium Synechocystis PCC 6803 [My Copy] Molecular and General Genetics MGG, Vol. 221, No. 1. (1 March 1990), pp. 129-133. by Sabine Kreps, Fabrice Ferino, Christine Mosrin, Jozef Gerits, Max Mergeay, Pierre Thuriaux posted to pcc6803 plasmid transformation by analogAI on 2008-06-09 08:49:40 as
	A host-vector system for gene cloning in the cyanobacterium Synechocystis PCC 6803 [My Copy] Molecular and General Genetics MGG, Vol. 204, No. 1. (1 July 1986), pp. 185-191. by F. Chauvat, L. Vries, A. Ende, G. A. Arkel posted to pcc6803 transformation by analogAI on 2008-06-09 07:10:46 as
	Engineering BioBrick vectors from BioBrick parts [My Copy] Journal of Biological Engineering, Vol. 2, No. 5. (14 April 2008) by Reshma P. Shetty, Drew Endy, Thomas F. Knight posted to biobrick transformation vector by analogAI on 2008-05-06 05:32:54 as
	On the Rate of Diatom Growth [My Copy] Journal of the Marine Biological Association of the United Kingdom, Vol. 19, No. 1. (1933), pp. 253-276. by H. W. Harvey posted to clostorium_nitzschia diatom by analogAI on 2006-11-26 23:28:34 as
	CO2 fixation and ethanol production with microalgal photosynthesis and intracellular anaerobic fermentation [My Copy] pp. 137-142. by A. Hirano posted to chlamydomonas_reinhardtii chlorella_vulgaris ethanol green_algae by analogAI on 2006-11-04 07:56:24 as
	Specificity grafting of human antibody frameworks selected from a phage display library: generation of a highly stable humanized anti-CD22 single-chain Fv fragment [My Copy] Protein Eng., Vol. 16, No. 10. (1 October 2003), pp. 753-759. by Jurgen Krauss, Michaela A. Arndt, Andrew C. Martin, Huaitian Liu, Susanna M. Rybak posted to protein-engineering protein-stability by analogAI on 2006-08-22 20:37:14 as
	Identification of differences in the specificity-determining residues of antibodies that recognize antigens of different size: implications for the rational design of antibody repertoires. [My Copy] J Mol Recognit, Vol. 17, No. 2. (r 2004), pp. 132-143. by J. C. Almagro posted to immunoglobulin proteinrecognition by analogAI on 2006-08-22 20:30:24 as
	Stability improvement of antibodies for extracellular and intracellular applications: CDR grafting to stable frameworks and structure-based framework engineering. [My Copy] Methods, Vol. 34, No. 2. (October 2004), pp. 184-199. by S. Ewert, A. Honegger, A. Plückthun posted to cdr immunoglobulin protein-engineering protein-stability protein-structure residue-covariation review-article by analogAI on 2006-06-03 07:07:31 as
	Engineering novel binding proteins from nonimmunoglobulin domains [My Copy] Nature Biotechnology, Vol. 23, No. 10. (06 October 2005), pp. 1257-1268. by Kaspar H. Binz, Patrick Amstutz, Andreas Plückthun posted to immunoglobulin protein-engineering proteinrecognition by analogAI on 2006-06-03 06:55:34 as
	Improving contact predictions by the combination of correlated mutations and other sources of sequence information. [My Copy] Folding & design, Vol. 2, No. 3. (1997) by O. Olmea, A. Valencia posted to protein-structure residue-covariation by analogAI on 2006-05-05 05:31:43 as along with 2 people qluo RebeccaHamer
	Information content of individual genetic sequences. [My Copy] J Theor Biol, Vol. 189, No. 4. (21 December 1997), pp. 427-441. by T. D. Schneider posted to informationtheory sequencealignment statistics by analogAI on 2005-12-16 03:44:49 as
	Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. [My Copy] Comput Appl Biosci, Vol. 12, No. 4. (August 1996), pp. 327-345. by K. Sjölander, K. Karplus, M. Brown, et al.R. Hughey, A. Krogh, I. S. Mian, D. Haussler posted to sequencealignment statistics by analogAI on 2005-12-16 03:31:32 as along with 1 person kumar_physics
	FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. [My Copy] J Mol Biol, Vol. 310, No. 1. (29 June 2001), pp. 243-257. by J. Shi, T. L. Blundell, K. Mizuguchi posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-12-03 00:21:11 as along with 8 people and 1 group semin j3xucite miguel bicko massivemayhem medic0747 sebk TOchi OPIG
	Multiple structural alignment by secondary structures: algorithm and applications. [My Copy] Protein Sci, Vol. 12, No. 11. (November 2003), pp. 2492-2507. by O. Dror, H. Benyamini, R. Nussinov, H. J. Wolfson posted to protein-structure structuralalignment by analogAI on 2005-12-01 00:02:06 as along with 2 people ziquje dimka
	The immunoglobulin fold family: sequence analysis and 3D structure comparisons. [My Copy] Protein Eng, Vol. 12, No. 7. (July 1999), pp. 563-571. by D. M. Halaby, A. Poupon, J. Mornon posted to immunoglobulin proteinfolding proteinrecognition by analogAI on 2005-11-29 05:49:42 as along with 1 person and 1 group stevanspringer FAB-lab
	Determining the roles of different chain fragments in recognition of immunoglobulin fold [My Copy] Protein Eng., Vol. 15, No. 1. (1 January 2002), pp. 13-19. by B. Reva, A. Kister, S. Topiol, I. Gelfand posted to immunoglobulin protein-structure proteinfolding by analogAI on 2005-11-29 05:47:58 as

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protein-structure	45
structuralalignment	23
residue-covariation	16
immunoglobulin	11
sequencealignment	8
proteinfolding	6
informationtheory	5
proteinrecognition	5
pcc6803	4
review-article	4
cdr	3
protein-engineering	3
protein-sequence	3
protein-stability	3
sequencelogos	3
transformation	3
allergy	2
disulfides	2
statistics	2
behavior	1
biobrick	1
caig	1
chlamydomonas_reinhardtii	1
chlorella_vulgaris	1
cichlid	1
clostorium_nitzschia	1
computer-simulation	1
diatom	1
ethanol	1
geneexpression	1
glucanase	1
green_algae	1
growth	1
halotolerance	1
ige	1
interposon	1
lichenase	1
omega	1
plasmid	1
signalprotein	1
smallmolecule	1
vector	1

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