analogAI's structuralalignment [23 articles] Export

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	Gaps in structurally similar proteins: towards improvement of multiple sequence alignment. [My Copy] Proteins, Vol. 54, No. 1. (1 January 2004), pp. 71-87. by J. O. Wrabl, N. V. Grishin posted to protein-sequence sequencealignment structuralalignment by analogAI on 2006-06-29 05:45:12 as along with 4 people and 2 groups j3xucite ana barry granujilla structural_bioinformatics Bioinformatics
	FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. [My Copy] J Mol Biol, Vol. 310, No. 1. (29 June 2001), pp. 243-257. by J. Shi, T. L. Blundell, K. Mizuguchi posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-12-03 00:21:11 as along with 8 people and 1 group semin j3xucite miguel bicko massivemayhem medic0747 sebk TOchi OPIG
	Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels. [My Copy] Proteins, Vol. 14, No. 2. (October 1992), pp. 309-323. by R. B. Russell, G. J. Barton posted to protein-structure structuralalignment by analogAI on 2005-12-01 01:07:46 as along with 3 people mijam chad_davis jefferlyemerson
	Multiple structural alignment by secondary structures: algorithm and applications. [My Copy] Protein Sci, Vol. 12, No. 11. (November 2003), pp. 2492-2507. by O. Dror, H. Benyamini, R. Nussinov, H. J. Wolfson posted to protein-structure structuralalignment by analogAI on 2005-12-01 00:02:06 as along with 2 people ziquje dimka
	A method for simultaneous alignment of multiple protein structures. [My Copy] Proteins, Vol. 56, No. 1. (1 July 2004), pp. 143-156. by M. Shatsky, R. Nussinov, H. J. Wolfson posted to protein-structure structuralalignment by analogAI on 2005-11-28 05:22:26 as along with 5 people tomjad nachtalp j3xucite carlescorbi kgutwin
	Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming. [My Copy] J Mol Biol, Vol. 212, No. 2. (20 March 1990), pp. 403-428. by A. Sali, T. L. Blundell posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-11-24 01:00:06 as along with 1 person bicko
	An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments. [My Copy] J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 691-711. by A. S. Yang, B. Honig posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-11-23 23:47:02 as
	An integrated approach to the analysis and modeling of protein sequences and structures. II. On the relationship between sequence and structural similarity for proteins that are not obviously related in sequence. [My Copy] J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 679-689. by A. S. Yang, B. Honig posted to protein-structure structuralalignment by analogAI on 2005-11-23 23:46:13 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance. [My Copy] J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 665-678. by A. S. Yang, B. Honig posted to protein-structure structuralalignment by analogAI on 2005-11-23 23:40:39 as along with 2 people and 2 groups ana dimka structural_bioinformatics Bioinformatics
	Frequency of gaps observed in a structurally aligned protein pair database suggests a simple gap penalty function [My Copy] Nucl. Acids Res., Vol. 32, No. 9. (20 May 2004), pp. 2838-2843. by Nalin C. Goonesekere, Byungkook Lee posted to protein-structure structuralalignment by analogAI on 2005-11-22 02:43:01 as along with 2 people and 2 groups j3xucite ana structural_bioinformatics Bioinformatics
	Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. [My Copy] Protein Eng, Vol. 11, No. 9. (September 1998), pp. 739-747. by I. N. Shindyalov, P. E. Bourne posted to protein-structure structuralalignment by analogAI on 2005-11-22 02:42:03 as along with 11 people and 2 groups medic0747 sebk reyez pjcite nigham jwm dgront rabio siebertm Inchoate sim82 Radiation_Damage Stressosome
	MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. [My Copy] Protein science : a publication of the Protein Society, Vol. 11, No. 11. (1 November 2002), pp. 2606-2621. by Angel R. Ortiz, Charlie E. Strauss, Osvaldo Olmea posted to protein-structure structuralalignment by analogAI on 2005-11-19 02:09:13 as along with 8 people and 2 groups tomjad awarlau ana iakes dimka jwm sebk tjimenez structural_bioinformatics Bioinformatics
	Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins [My Copy] Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 1010-1019. by Yuan Xin, Bystroff Christopher posted to protein-structure structuralalignment by analogAI on 2005-11-19 02:07:51 as
	Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. [My Copy] J Mol Biol, Vol. 346, No. 4. (4 March 2005), pp. 1173-1188. by R. Kolodny, P. Koehl, M. Levitt posted to protein-structure review-article structuralalignment by analogAI on 2005-11-19 01:53:49 as along with 5 people and 2 groups karbak ana lulab balajis reyez structural_bioinformatics Bioinformatics
	Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions [My Copy] Acta Crystallographica Section D: Biological Crystallography, Vol. 60, No. 1. (01 December 2004), pp. 2256-2268. by Krissinel, E., Henrick, K. posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:51:43 as along with 3 people and 4 groups barry jwm robert structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
	LGA: A method for finding 3D similarities in protein structures. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3370-3374. by A. Zemla posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:42:19 as along with 3 people and 2 groups karbak ana vavi structural_bioinformatics Bioinformatics
	Protein structure alignment using environmental profiles [My Copy] Protein Eng., Vol. 13, No. 8. (1 August 2000), pp. 535-543. by Jongsun Jung, Byungkook Lee posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:33:31 as
	Protein structure comparison using the markov transition model of evolution. [My Copy] Proteins, Vol. 41, No. 1. (1 October 2000), pp. 108-122. by T. Kawabata, K. Nishikawa posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:28:02 as along with 1 person nigham
	Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. [My Copy] Protein Sci, Vol. 13, No. 7. (July 2004), pp. 1865-1874. by V. A. Ilyin, A. Abyzov, C. M. Leslin posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:19:04 as along with 3 people and 2 groups medic0747 reyez ana structural_bioinformatics Bioinformatics
	Multiple flexible structure alignment using partial order graphs [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2362-2369. by Yuzhen Ye, Adam Godzik posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:15:26 as along with 2 people ubcg08l irenas
	3DCoffee: combining protein sequences and structures within multiple sequence alignments. [My Copy] J Mol Biol, Vol. 340, No. 2. (2 July 2004), pp. 385-395. by O. O'Sullivan, K. Suhre, C. Abergel, D. G. Higgins, C. Notredame posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-11-16 19:09:35 as along with 4 people and 4 groups ana jwm edvin nickolay structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
	A new progressive-iterative algorithm for multiple structure alignment [My Copy] Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3255-3263. by Dmitry Lupyan, Alejandra Leo-Macias, Angel R. Ortiz posted to protein-structure structuralalignment by analogAI on 2005-11-12 01:27:23 as along with 3 people and 2 groups ana dimka insectopalo structural_bioinformatics Bioinformatics
	MultiProt - A Multiple Protein Structural Alignment Algorithm [My Copy] In WABI '02: Proceedings of the Second International Workshop on Algorithms in Bioinformatics, Vol. 2452 (2002), pp. 235-250. by Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson posted to protein-structure structuralalignment by analogAI on 2005-11-12 00:00:45 as

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protein-structure	45
structuralalignment	23
residue-covariation	16
immunoglobulin	11
sequencealignment	8
proteinfolding	6
informationtheory	5
proteinrecognition	5
pcc6803	4
review-article	4
cdr	3
protein-engineering	3
protein-sequence	3
protein-stability	3
sequencelogos	3
transformation	3
allergy	2
disulfides	2
statistics	2
behavior	1
biobrick	1
caig	1
chlamydomonas_reinhardtii	1
chlorella_vulgaris	1
cichlid	1
clostorium_nitzschia	1
computer-simulation	1
diatom	1
ethanol	1
geneexpression	1
glucanase	1
green_algae	1
growth	1
halotolerance	1
ige	1
interposon	1
lichenase	1
omega	1
plasmid	1
signalprotein	1
smallmolecule	1
vector	1

analogAI's structuralalignment [23 articles] Export

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