andytseng's library 92 articles Export

	Text mining and ontologies in biomedicine: Making sense of raw text [My Copy] Brief Bioinform, Vol. 6, No. 3. (1 January 2005), pp. 239-251. by Irena Spasic, Sophia Ananiadou, John McNaught, Anand Kumar posted to biomedical ontology text_mining by andytseng on 2006-07-27 15:27:01 as along with 17 people and 5 groups lmichan tsunol artaban421 daforerog liblab svozil arafalov henk-cul farzanehs lauras irenas yas hpiwowar helliontroy johnkork daniel_schober yggdrasil Bioinformatics NLP dbk-lab T_lab biomedical-nlp
	Biomedical Language Processing: What's Beyond PubMed? [My Copy] Molecular Cell, Vol. 21, No. 5. (03 March 2006), pp. 589-594. by Lawrence Hunter, K. Bretonnel Cohen posted to biomedical nlp by andytseng on 2006-07-27 15:25:58 as along with 16 people and 3 groups billhao Gaetan artaban421 robert85 lmichan gavinhoran ogenex henk-cul farzanehs irenas yas hpiwowar caporaso jacky957 TheresaNiederberger satre dbk-lab T_lab biomedical-nlp
	A metabolome pipeline: from concept to data to knowledge [My Copy] Metabolomics, Vol. 1, No. 1. (March 2005), pp. 39-51. by Marie Brown, Warwick B. Dunn, David I. Ellis, et al.Royston Goodacre, Julia Handl, Joshua D. Knowles, Steve O'Hagan, Irena Spasic, Douglas B. Kell posted to data machine_learning metabolome omics by andytseng on 2006-07-27 15:25:15 as along with 3 people and 1 group irenas egonw JeremyZucker dbk-lab
	Metabolic footprinting and systems biology: the medium is the message [My Copy] Nature Reviews Microbiology, Vol. 3, No. 7. (01 July 2005), pp. 557-565. by Douglas B. Kell, Marie Brown, Hazel M. Davey, Warwick B. Dunn, Irena Spasic, Stephen G. Oliver posted to metabolomics omics systems_biology by andytseng on 2006-07-27 15:24:03 as along with 5 people and 1 group pauldobson irenas Borelli alexg bayesian dbk-lab
	MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics [My Copy] BMC Bioinformatics, Vol. 7 (2006), 281. by Irena Spasic, Warwick Dunn, Giles Velarde, et al.Andy Tseng, Helen Jenkins, Nigel W. Hardy, Stephen G. Oliver, Douglas B. Kell posted to data database metabolomics modeling omics ontology xml by andytseng on 2006-07-27 15:16:13 as along with 2 people and 1 group irenas orzenil dbk-lab
	A Proposal For A Common Data Exchange Format For Repertory Grid Data [My Copy] Journal of Constructivist Psychology, Vol. 17, No. 3. (July 2004), pp. 247-251. by Otto B. Walter, Andreas Bacher, Martin Fromm posted to data database grid by andytseng on 2006-05-02 16:09:32 as
	Design of a data model for developing laboratory information management and analysis systems for protein production. [My Copy] Proteins, Vol. 58, No. 2. (1 February 2005), pp. 278-284. by A. Pajon, J. Ionides, J. Diprose, et al.J. Fillon, R. Fogh, A. W. Ashton, H. Berman, W. Boucher, M. Cygler, E. Deleury, R. Esnouf, J. Janin, R. Kim, I. Krimm, C. L. Lawson, E. Oeuillet, A. Poupon, S. Raymond, T. Stevens, H. van Tilbeurgh, J. Westbrook, P. Wood, E. Ulrich, W. Vranken, L. Xueli, E. Laue, D. I. Stuart, K. Henrick posted to data modeling by andytseng on 2006-05-02 12:02:15 as
	An algebra for semantic interoperability of information sources [My Copy] Bioinformatics and Bioengineering Conference, 2001. Proceedings of the IEEE 2nd International Symposium on (2001), pp. 174-182. by P. Mitra, G. Wiederhold posted to modeling ontology semantic by andytseng on 2006-04-19 11:59:52 as
	OntoKhoj: a semantic web portal for ontology searching, ranking and classification [My Copy] In WIDM '03: Proceedings of the 5th ACM international workshop on Web information and data management (2003), pp. 58-61. by Chintan Patel, Kaustubh Supekar, Yugyung Lee, E. K. Park posted to ontology ranking semantic_web by andytseng on 2006-04-04 17:25:48 as along with 6 people and 2 groups jgronski wcrosbie gphroh taho searchy wasp Wikipedia CoP_CMS
	Searching and Ranking Ontologies on the Semantic Web [My Copy] In Workshop on Ontology Management: Searching, Selection, Ranking, and Segmentation (2005), pp. 57-60. by Edward Thomas, Harith Alani, Derek Sleeman, Christopher Brewster posted to ontology search_engine semantic_web_mining by andytseng on 2006-04-04 16:41:14 as
	Functional genomics databases on the web [My Copy] Cellular Microbiology, Vol. 7, No. 8. (August 2005), pp. 1053-1059. by Christian J. Stoeckert posted to database fuge www by andytseng on 2006-04-03 15:36:11 as along with 1 person and 1 group irenas dbk-lab
	Top-down standards will not serve systems biology. [My Copy] Nature, Vol. 440, No. 7080. (2 March 2006), pp. 24-24. by John Quackenbush, Christian Stoeckert, Catherine Ball, et al.Alvis Brazma, Robert Gentleman, Wolfgang Huber, Rafael Irizarry, Marc Salit, Gavin Sherlock, Paul Spellman, Neil Winegarden posted to standard systems_biology by andytseng on 2006-04-03 15:33:44 as along with 4 people and 1 group neilswainston irenas wnpx mhucka dbk-lab
	Computational prediction of human metabolic pathways from the complete human genome. [My Copy] Genome Biol, Vol. 6, No. 1. (2005) by P. Romero, J. Wagg, M. L. Green, D. Kaiser, M. Krummenacker, P. D. Karp posted to gene human_genome metabolic_pathway by andytseng on 2006-02-14 12:08:00 as along with 5 people and 2 groups ilyashl tmmurali okarsligil eweaver bsmagic Bioinformatics bioinplant
	ChemDB: a public database of small molecules and related chemoinformatics resources. [My Copy] Bioinformatics (20 September 2005) by Jonathan Chen, S Joshua J. Swamidass, Yimeng Dou, Jocelyne Bruand, Pierre Baldi posted to database omics by andytseng on 2006-02-06 15:33:20 as along with 1 person BragilMassoud
	Fusion of mass spectrometry-based metabolomics data. [My Copy] Anal Chem, Vol. 77, No. 20. (15 October 2005), pp. 6729-6736. by A. K. Smilde, M. J. van der Werf, S. Bijlsma, B. J. van der Werff-van der Vat, R. H. Jellema posted to data mass_spectrometry metabolomics by andytseng on 2006-01-30 15:53:02 as along with 3 people and 1 group mayercd irenas rvosa dbk-lab
	Grammatical model of the regulation of gene expression. [My Copy] Proc Natl Acad Sci U S A, Vol. 89, No. 20. (15 October 1992), pp. 9405-9409. by J. Collado-Vides posted to genomics modeling by andytseng on 2006-01-30 15:51:01 as along with 3 people and 1 group irenas discreteonyxorb maximilianh dbk-lab
	From XML to RDF: how semantic web technologies will change the design of 'omic' standards [My Copy] Nature Biotechnology, Vol. 23, No. 9. (07 September 2005), pp. 1099-1103. by Xiaoshu Wang, Robert Gorlitsky, Jonas S. Almeida posted to modeling omics rdf standard xml by andytseng on 2006-01-30 15:48:03 as along with 15 people and 3 groups egonw eesruiz rvosa druvus badger_master irenas moborg wnpx dullhunk hpiwowar ianturton mza jmuhlich ibuch dansullivanblk ImagCom - Biomedical Text Computing dbk-lab SorgerLab
	A proposed framework for the description of plant metabolomics experiments and their results [My Copy] Nature Biotechnology, Vol. 22, No. 12. (06 December 2004), 1601. by Helen Jenkins, Nigel Hardy, Manfred Beckmann, et al.John Draper, Aileen R. Smith, Janet Taylor, Oliver Fiehn, Royston Goodacre, Raoul J. Bino, Robert Hall, Joachim Kopka, Geoffrey A. Lane, B. Markus Lange, Jang R. Liu, Pedro Mendes, Basil J. Nikolau, Stephen G. Oliver, Norman W. Paton, Sue Rhee, Ute Roessner-Tunali, Kazuki Saito, Jørn Smedsgaard, Lloyd W. Sumner, Trevor Wang, Sean Walsh, Eve S. Wurtele, Douglas B. Kell posted to metabolomics modeling ontology by andytseng on 2006-01-20 16:18:58 as along with 9 people and 2 groups dbk irenas betainverse LeightonP agileproteomics BIBLIOma dullhunk pmendes katerinakal streptomyces dbk-lab
	Functional annotation and network reconstruction through cross-platform integration of microarray data [My Copy] Nat Biotech, Vol. 23, No. 2. (16 February 2005), pp. 238-243. by Xianghong J. Zhou, Ming-Chih J. Kao, Haiyan Huang, et al.Angela Wong, Juan Nunez-Iglesias, Michael Primig, Oscar M. Aparicio, Caleb E. Finch, Todd E. Morgan, Wing H. Wong posted to algorithm data modeling omics by andytseng on 2005-12-06 13:02:04 as along with 8 people and 2 groups Borelli cswinburne setar imouthesmp lyongu wnpx rdiaz bsmagic Bioinformatics bioinplant
	Will a Biological Database Be Different from a Biological Journal? [My Copy] PLoS Computational Biology, Vol. 1, No. 3. (26 August 2005), pp. 0179-0181. by Philip Bourne posted to bioinformatics database by andytseng on 2005-10-11 13:30:46 as
	Biological Databases for Plant Research [My Copy] Plant Physiology, Vol. 138, No. 1., pp. 1-3. by Seung Y. Rhee, Bill Crosby posted to bioinformatics database omics by andytseng on 2005-10-10 14:48:04 as
	Summary recommendations for standardization and reporting of metabolic analyses. [My Copy] Nat Biotechnol, Vol. 23, No. 7. (July 2005), pp. 833-838. by J. C. Lindon, J. K. Nicholson, E. Holmes, et al.H. C. Keun, A. Craig, J. T. Pearce, S. J. Bruce, N. Hardy, S. A. Sansone, H. Antti, P. Jonsson, C. Daykin, M. Navarange, R. D. Beger, E. R. Verheij, A. Amberg, D. Baunsgaard, G. H. Cantor, L. Lehman-McKeeman, M. Earll, S. Wold, E. Johansson, J. N. Haselden, K. Kramer, C. Thomas, J. Lindberg, I. Schuppe-Koistinen, I. D. Wilson, M. D. Reily, D. G. Robertson, H. Senn, A. Krotzky, S. Kochhar, J. Powell, F. van der Ouderaa, R. Plumb, H. Schaefer, M. Spraul posted to metabolomics standard by andytseng on 2005-08-10 10:02:21 as along with 4 people and 1 group irenas betainverse daniel_schober BIBLIOma dbk-lab
	A Short Study on the Success of the Gene Ontology [My Copy] Journal of Web Semantics, Vol. 1, No. 2. (2004) by Michael Bada, Robert Stevens, Carole Goble, et al.Yolanda Gil, Michael Ashburner, Judith A. Blake, Michael J. Cherry, Midori Harris, Suzanna Lewis edited by Carole Goble, Toru Ishida, Rudi Studer, Stefan Decker posted to database gene ontology by andytseng on 2005-08-10 09:58:15 as
	GENOMICS: A Crisis in Postgenomic Nomenclature [My Copy] Science, Vol. 296, No. 5568. (26 April 2002), pp. 671-672. by Stanley Fields, Mark Johnston posted to genomics omics by andytseng on 2005-06-27 13:04:28 as along with 1 person and 1 group irenas dbk-lab
	Metabolomics: Current Analytical Platforms and Methodologies [My Copy] In Trends in Analytical Chemistry, Vol. 24, No. 4. (2005), pp. 285-294. by Warwick B. Dunn, David I. Ellis posted to infrared_spectroscopy mass_spectrometry metabolic_fingerprinting metabolic_profiling metabolite metabolome metabolomics metabonomics nmr by andytseng on 2005-06-27 09:42:59 as
	Measuring the Metabolome: Current Analytical Technologies [My Copy] The Analyst,, No. 130. (2005), pp. 606-625. by Warwick B. Dunn, Nigel J. C. Bailey, Helen Johnson posted to metabolome by andytseng on 2005-06-27 09:35:36 as
	Semantic similarity measures as tools for exploring the gene ontology. [My Copy] Pac Symp Biocomput (2003), pp. 601-612. by P. W. Lord, R. D. Stevens, A. Brass, C. A. Goble posted to gene ontology by andytseng on 2005-06-09 17:09:18 as along with 9 people and 3 groups stefanorb irenas CitoJam ejmeij gaudan josemblazquez macavity1g sgoetz pmidford dbk-lab ilps LanguageModeling
	Data mining and knowledge discovery in databases [My Copy] Commun. ACM, Vol. 39, No. 11. (November 1996), pp. 24-26. by Usama Fayyad, Ramasamy Uthurusamy posted to data_mining database knowledge_discovery by andytseng on 2005-06-09 17:07:24 as along with 2 people and 2 groups irenas horeis dbk-lab CompIntelligentSystems
	Growing Pains for Metabolomics - The newest 'omic science is producing results - and more data than researchers know what to do with. [My Copy] In The Scientist (25 April 2005), pp. 25-28. by Bennett Daviss posted to metabolomics omics by andytseng on 2005-06-09 16:56:19 as
	An Evaluation of Representing Proteomics Experiments within FuGE-OM [My Copy] (April 2005) by Andrew Jones, Angel Pizarro, Paul Spellman, Chris Taylor, Norman Paton posted to fuge modeling omics ontology by andytseng on 2005-06-09 12:05:46 as
	Data standards for 'omic' science - Nature Biotechnology [My Copy] Nature Biotechnology, Vol. 22, No. 5. (2004), pp. 613-614. by John Quackenbush posted to data omics standard by andytseng on 2005-05-25 16:03:58 as
	A survey in indexing and searching XML documents [My Copy] J. Am. Soc. Inf. Sci. Technol., Vol. 53, No. 6. (May 2002), pp. 415-437. by Robert W. Luk, H. V. Leong, Tharam S. Dillon, Alvin T. Chan, W. Bruce Croft, James Allan posted to algorithm data database modeling xml by andytseng on 2005-05-11 13:56:37 as along with 6 people and 2 groups mogwaing gerold myui arjen bug dagmar dIEMoSIRIS compneur
	On views and XML [My Copy] SIGMOD Rec., Vol. 28, No. 4. (1999), pp. 30-38. by Serge Abiteboul posted to data database schema xml by andytseng on 2005-05-11 13:53:54 as
	Querying structured text in an XML database [My Copy] In SIGMOD '03: Proceedings of the 2003 ACM SIGMOD international conference on Management of data (2003), pp. 4-15. by Shurug Al-Khalifa, Cong Yu, H. V. Jagadish posted to algorithm database query_optimisation xml by andytseng on 2005-05-11 13:49:47 as along with 1 person arjen
	Automata theory for XML researchers [My Copy] SIGMOD Rec., Vol. 31, No. 3. (September 2002), pp. 39-46. by Frank Neven posted to modeling xml by andytseng on 2005-05-11 13:46:27 as along with 3 people and 5 groups kinaba voigt seabay Blog_and_Wiki_Research CSCW OpenArchive P2P XMLDataManagement
	A data model for XML databases [My Copy] J. Intell. Inf. Syst., Vol. 20, No. 1. (January 2003), pp. 63-80. by Vilas Wuwongse, Kiyoshi Akama, Chutiporn Anutariya, Ekawit Nantajeewarawat posted to database modeling xml by andytseng on 2005-05-11 13:42:59 as along with 1 person wasi
	Data modeling in the understanding database course: adding UML and XML modeling to the traditional course content [My Copy] J. Comput. Small Coll., Vol. 17, No. 5. (April 2002), pp. 147-153. by Bruce J. Neubauer posted to data database modeling uml xml by andytseng on 2005-05-11 13:40:53 as
	Adding Structure to Unstructured Data [My Copy] In Database Theory---ICDT'97, 6th International Conference, Vol. 1186 (August--October~ 1997), pp. 336-350. by Peter Buneman, Susan B. Davidson, Mary F. Fernandez, Dan Suciu edited by Foto N. Afrati, Phokion Kolaitis posted to data semistructured_data by andytseng on 2005-05-11 11:19:10 as along with 2 people gerold goltus
	Semistructured data and XML [My Copy] (2000), pp. 9-30. by Dan Suciu posted to query_language query_optimisation semistructured_data xml by andytseng on 2005-05-11 10:44:45 as along with 2 people gerold myui
	Data on the Web: from relations to semistructured data and XML [My Copy] (2000) by Serge Abiteboul, Peter Buneman, Dan Suciu posted to data database www xml by andytseng on 2005-05-11 10:36:33 as along with 2 people and 1 group takeha-e mahler Rightscom
	Requirements for XML document database systems [My Copy] In DocEng '01: Proceedings of the 2001 ACM Symposium on Document engineering (2001), pp. 85-94. by Airi Salminen, F. W. Frank posted to database requirement_engineering xml by andytseng on 2005-05-11 10:18:42 as
	On Uncertainty and Data-Warehouse Design [My Copy] Lecture Notes in Computer Science, Vol. 3261 (October 2004), pp. 4-13. by Panagiotis Chountas, Ilias Petrounias, Christos Vasilakis, et al.Andy Tseng, Elia El-Darzi, Krassimir T. Atanassov, Vassilis Kodogiannis posted to data data_mining olap warehouse by andytseng on 2005-05-06 17:19:17 as
	Creating a bioinformatics nation. [My Copy] Nature, Vol. 417, No. 6885. (9 May 2002), pp. 119-120. by Lincoln Stein posted to integration xml by andytseng on 2005-05-06 17:15:29 as along with 13 people and 1 group pekrau druvus irenas balicea moborg wnpx dullhunk fisherp cjeans sentausa pablomendes rvosa fgibson dbk-lab
	XML Databases, are Ready for Bioinformatics? [My Copy] In Proceedings of the 5th Annual Spanish Bioinformatics Conference (2004), pp. 166-170. by Jose M. Fernandez, Alfonso Valencia edited by Xavier Messeguer, Gabriel Valiente posted to bioinformatics database xml by andytseng on 2005-05-06 17:14:47 as along with 1 person and 1 group irenas dbk-lab
	Using XML technology for the ontology-based semantic integration of life science databases. [My Copy] IEEE Trans Inf Technol Biomed, Vol. 8, No. 2. (June 2004), pp. 154-160. by S. Philippi, J. Köhler posted to database ontology xml by andytseng on 2005-05-06 17:14:20 as along with 2 people and 1 group irenas agileproteomics dbk-lab
	Plug-and-play XML: a health care perspective. [My Copy] J Am Med Inform Assoc, Vol. 9, No. 1. (b 2002), pp. 37-48. by R. Schweiger, S. Hoelzer, U. Altmann, J. Rieger, J. Dudeck posted to xml by andytseng on 2005-05-06 17:13:43 as along with 2 people and 1 group irenas m5101202 dbk-lab
	YAdumper: extracting and translating large information volumes from relational databases to structured flat files. [My Copy] Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2455-2457. by J. M. Fernández, A. Valencia posted to data database xml by andytseng on 2005-05-06 17:13:23 as along with 1 person and 1 group irenas dbk-lab
	Dynamic XML-based exchange of relational data: application to the Human Brain Project. [My Copy] AMIA Annu Symp Proc (2003), pp. 644-648. by Z. Tang, Y. Kadiyska, H. Li, D. Suciu, J. F. Brinkley posted to bioinformatics data xml by andytseng on 2005-05-06 17:12:49 as along with 1 person and 1 group irenas dbk-lab
	Automating data acquisition into ontologies from pharmacogenetics relational data sources using declarative object definitions and XML. [My Copy] Pac Symp Biocomput (2002), pp. 88-99. by D. L. Rubin, M. Hewett, D. E. Oliver, T. E. Klein, R. B. Altman posted to data ontology xml by andytseng on 2005-05-06 17:12:14 as along with 1 person and 1 group irenas dbk-lab
	Designing XML schemas for bioinformatics. [My Copy] Biotechniques, Vol. 34, No. 6. (June 2003) by R. E. Bruhn, P. J. Burton posted to bioinformatics schema xml by andytseng on 2005-05-06 17:11:25 as along with 2 people and 1 group irenas dullhunk dbk-lab

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xml	29
database	22
omics	22
data	20
web_mining	17
www	17
modeling	14
data_mining	13
ontology	11
metabolomics	8
web_usage_mining	8
bioinformatics	7
algorithm	6
standard	6
web_access_log	5
knowledge_discovery	4
personalisation	4
web_content_mining	4
biomedical	3
gene	3
metabolome	3
schema	3
web_structure_mining	3
fuge	2
genomics	2
mass_spectrometry	2
olap	2
query_optimisation	2
semantic_web_mining	2
semistructured_data	2
systems_biology	2
uml	2
access_pattern	1
administration_tools	1
association_rule	1
data_preparation	1
fuzzy	1
grid	1
http	1
human_genome	1
information_retrieval	1
infrared_spectroscopy	1
integration	1
machine_learning	1
markov_model	1
metabolic_fingerprinting	1
metabolic_pathway	1
metabolic_profiling	1
metabolite	1
metabonomics	1
nlp	1
nmr	1
pattern_discovery	1
pattern_recognition	1
query_language	1
ranking	1
rdf	1
requirement_engineering	1
search_engine	1
semantic	1
semantic_web	1
sequential_pattern	1
soft_computing	1
statistics	1
text_mining	1
visualization	1
warehouse	1

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