anna_yershova's protein [52 articles] Export Sort

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	A refinement protocol to determine structure, topology, and depth of insertion of membrane proteins using hybrid solution and solid-state NMR restraints [My Copy] Journal of Biomolecular NMR, Vol. 44, No. 4. (1 August 2009), pp. 195-205. by Lei Shi, Nathaniel Traaseth, Raffaello Verardi, Alessandro Cembran, Jiali Gao, Gianluigi Veglia posted to nmr protein by anna_yershova on 2009-07-30 18:18:15 as along with 1 person viktor21614
	De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 16. (6 August 2002), pp. 10260-10265. by Chad M. Rienstra, Lisa Tucker-Kellogg, Christopher P. Jaroniec, et al.Morten Hohwy, Bernd Reif, Michael T. Mcmahon, Bruce Tidor, Tomás Lozano-Pérez, Robert G. Griffin posted to crystallography dynamics nmr protein by anna_yershova on 2009-07-24 20:07:25 as along with 1 person viktor21614
	Structural basis for the selectivity of the external thioesterase of the surfactin synthetase [My Copy] Nature, Vol. 454, No. 7206. (14 August 2008), pp. 907-911. by Alexander Koglin, Frank Lohr, Frank Bernhard, et al.Vladimir V. Rogov, Dominique P. Frueh, Eric R. Strieter, Mohammad R. Mofid, Peter Guntert, Gerhard Wagner, Christopher T. Walsh, Mohamed A. Marahiel, Volker Dotsch posted to dynamics protein by anna_yershova on 2009-07-24 19:34:49 as along with 2 people cychen_cite zwang
	Dynamic thiolation-thioesterase structure of a non-ribosomal peptide synthetase [My Copy] Nature, Vol. 454, No. 7206. (14 August 2008), pp. 903-906. by Dominique P. Frueh, Haribabu Arthanari, Alexander Koglin, et al.David A. Vosburg, Andrew E. Bennett, Christopher T. Walsh, Gerhard Wagner posted to dynamics protein by anna_yershova on 2009-07-24 19:33:55 as along with 2 people and 1 group cychen_cite joseph_x_zhou protein_Dyn
	Crystal structure of the human [bgr]2 adrenergic G-protein-coupled receptor [My Copy] Nature, Vol. 450, No. 7168. (15 November 2007), pp. 383-387. by Soren G. F. Rasmussen, Hee-Jung Choi, Daniel M. Rosenbaum, et al.Tong S. Kobilka, Foon S. Thian, Patricia C. Edwards, Manfred Burghammer, Venkata R. P. Ratnala, Ruslan Sanishvili, Robert F. Fischetti, Gebhard F. X. Schertler, William I. Weis, Brian K. Kobilka posted to accessibility_constrains protein by anna_yershova on 2009-07-24 19:21:43 as along with 4 people leocmcheung reyez jwm tkershaw
	High-Resolution Crystal Structure of an Engineered Human 2-Adrenergic G Protein Coupled Receptor [My Copy] Science, Vol. 318, No. 5854. (23 November 2007), pp. 1258-1265. by Vadim Cherezov, Daniel M. Rosenbaum, Michael A. Hanson, et al.Soren G. F. Rasmussen, Foon S. Thian, Tong S. Kobilka, Hee-Jung Choi, Peter Kuhn, William I. Weis, Brian K. Kobilka, Raymond C. Stevens posted to accessibility_constrains protein by anna_yershova on 2009-07-24 19:20:58 as along with 9 people and 3 groups artkoch cafeandaman jwm Fritz gcaltabiano merj sobolevnrm davidlott rph neurolit LabCompMed baker-group
	A crystal clear view of the [beta]2-adrenergic receptor [My Copy] Nat Biotech, Vol. 26, No. 2. (February 2008), pp. 189-191. by Robert J. Lefkowitz, Jin-Peng Sun, Arun K. Shukla posted to accessibility_constrains protein by anna_yershova on 2009-07-24 19:16:04 as along with 2 people tkershaw merj
	Conformational changes in G-protein-coupled receptors-the quest for functionally selective conformations is open. [My Copy] British journal of pharmacology, Vol. 153 Suppl 1 (3 March 2008) by C. Hoffmann, A. Zürn, M. Bünemann, M. J. Lohse posted to accessibility_constrains protein by anna_yershova on 2009-07-24 19:15:14 as along with 2 people and 1 group xdeupi Fritz neurolit
	Structural insights into G-protein-coupled receptor activation☆ [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 6. (25 December 2008), pp. 734-740. by W. Weis, B. Kobilka posted to accessibility_constrains protein by anna_yershova on 2009-07-24 19:13:41 as along with 2 people and 2 groups priyaps barry structural_bioinformatics McCammon
	Ligand-Stabilized Conformational States of Human ²2 Adrenergic Receptor: Insight into G-Protein-Coupled Receptor Activation [My Copy] Vol. 94, No. 6. (15 March 2008), pp. 2027-2042. by Supriyo Bhattacharya, Spencer E. Hall, Hubert Li, Nagarajan Vaidehi posted to accessibility_constrains protein by anna_yershova on 2009-07-24 19:10:49 as
	Structural basis for ligand binding and specificity in adrenergic receptors: implications for GPCR-targeted drug discovery. [My Copy] Biochemistry, Vol. 47, No. 42. (21 October 2008), pp. 11013-11023. by T. Huber, S. Menon, T. P. Sakmar posted to accessibility_constrains protein by anna_yershova on 2009-07-24 19:09:44 as along with 1 person agrossfield
	FTIR analysis of GPCR activation using azido probes [My Copy] Nat Chem Biol, Vol. 5, No. 6. (June 2009), pp. 397-399. by Shixin Ye, Thomas Huber, Reiner Vogel, Thomas P. Sakmar posted to accessibility_constrains protein by anna_yershova on 2009-07-24 19:08:27 as along with 1 person Takao
	Rapid Sampling of Molecular Motions with Prior Information Constraints [My Copy] PLoS Comput Biol, Vol. 5, No. 2. (27 February 2009), e1000295. by Barak Raveh, Angela Enosh, Ora Schueler-Furman, Dan Halperin posted to accessibility_constrains protein by anna_yershova on 2009-07-24 18:59:18 as along with 1 person apaydin
	TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. [My Copy] Journal of biomolecular NMR, Vol. 44, No. 4. (August 2009), pp. 213-223. by Yang Shen, Frank Delaglio, Gabriel Cornilescu, Ad Bax posted to nmr protein by anna_yershova on 2009-07-19 18:58:54 as along with 4 people dgront laurabailey viktor21614 apaydin
	CCP4 Program Suite : refmac [My Copy] by Trueblood Schomaker posted to crystallography dynamics protein by anna_yershova on 2009-07-19 18:04:18 as
	Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution [My Copy] Science, Vol. 320, No. 5882. (13 June 2008), pp. 1471-1475. by Oliver F. Lange, Nils-Alexander Lakomek, Christophe Fares, et al.Gunnar F. Schroder, Korvin F. A. Walter, Stefan Becker, Jens Meiler, Helmut Grubmuller, Christian Griesinger, Bert L. de Groot posted to dynamics protein rdc by anna_yershova on 2009-07-19 17:55:31 as along with 6 people and 3 groups edws paulschlesinger higueruelo barry jmccammon cchang structural_bioinformatics McCammon Chang group
	NMR Residual Dipolar Couplings as Probes of Biomolecular Dynamics [My Copy] Chemical Reviews, Vol. 106, No. 5. (1 May 2006), pp. 1720-1736. by Joel R. Tolman, Ke Ruan posted to dynamics nmr protein rdc by anna_yershova on 2009-07-11 18:03:12 as along with 1 person Diego_Prada
	Structural biology: Protein dynamics from disorder [My Copy] Nature, Vol. 459, No. 7250. (24 June 2009), pp. 1063-1064. by Joel R. Tolman posted to dynamics nmr protein by anna_yershova on 2009-07-11 18:00:55 as along with 5 people skywalkerus02 niallhaslam reyez pablocarb yse
	Alteration of enzyme specificity by computational loop remodeling and design [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 23. (9 June 2009), pp. 9215-9220. by Paul M. Murphy, Jill M. Bolduc, Jasmine L. Gallaher, Barry L. Stoddard, David Baker posted to dee design loops protein by anna_yershova on 2009-06-15 18:51:21 as along with 1 person zwang
	Motif-directed flexible backbone design of functional interactions [My Copy] Protein Science, Vol. 18, No. 6. (2009), pp. 1293-1305. by James J. Havranek, David Baker posted to dee design protein by anna_yershova on 2009-06-15 18:47:38 as along with 1 person aalibes
	A dictionary for protein side-chain entropies from NMR order parameters. [My Copy] Journal of the American Chemical Society, Vol. 131, No. 21. (3 June 2009), pp. 7226-7227. by D. W. Li, R. Brüschweiler posted to dee design protein by anna_yershova on 2009-06-15 17:45:09 as along with 3 people krapnik kintoki carlosjavierna
	In silico Relationship between Configurational Entropy and Soft Degrees of Freedom in Proteins and Peptides [My Copy] Physical Review Letters, Vol. 102, No. 11. (2009), 118108. by Da W. Li, Rafael Brüschweiler posted to dee design protein by anna_yershova on 2009-06-15 06:26:56 as along with 2 people and 1 group Diego_Prada sobolevnrm baker-group
	De novo determination of internuclear vector orientations from residual dipolar couplings measured in three independent alignment media. [My Copy] Journal of biomolecular NMR, Vol. 41, No. 2. (June 2008), pp. 61-76. by K. Ruan, K. B. Briggman, J. R. Tolman posted to dynamics nmr protein rdc by anna_yershova on 2009-05-28 19:50:46 as
	Structure of UDP-N-acetylglucosamine acyltransferase with a bound antibacterial pentadecapeptide. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 29. (18 July 2006), pp. 10877-10882. by A. H. Williams, R. M. Immormino, D. T. Gewirth, C. R. Raetz posted to nih protein by anna_yershova on 2009-04-04 22:33:11 as
	Rapid determination of protein folds using residual dipolar couplings [My Copy] Journal of Molecular Biology, Vol. 304, No. 3. (1 December 2000), pp. 447-460. by Andrew, Fang Tian, Hashim M. Al-Hashimi, James H. Prestegard posted to loops new_parameters rdc protein by anna_yershova on 2009-03-27 15:04:38 as
	Determination of Protein Backbone Structure Using Only Residual Dipolar Couplings [My Copy] Journal of American Chemical Society, Vol. 123, No. 7. (2001), pp. 1541-1542. by Jean-Christophe Hus, Dominique Marion, Martin Blackledge posted to loops new_parameters rdc protein by anna_yershova on 2009-03-27 15:04:32 as
	Protein Docking Using Continuum Electrostatics and Geometric Fit [My Copy] Protein Engineering, Vol. 14, No. 2. (2001), pp. 105-113. by J. G. Mandell, V. A. Roberts, M. E. Pique, et al.V. Kotlovyi, J. C. Mitchell, E. Nelson, I. Tsigelny, Eyck posted to protein by anna_yershova on 2009-03-27 15:04:32 as
	Automated NMR protein structure calculation [My Copy] Progress in Nuclear Magnetic Resonance Spectroscopy, Vol. 43, pp. 105-125. by Peter Guntert posted to noe protein by anna_yershova on 2009-03-27 15:04:31 as
	A Dipolar Coupling Based Strategy for Simultaneous Resonance Assignment and Structure Determination of Protein Backbones [My Copy] Journal of American Chemical Society, Vol. 123, No. 47. (2001), pp. 11791-11796. by Fang Tian, Homayoun Valafar, James H. Prestegard posted to loops rdc new_parameters protein by anna_yershova on 2009-03-27 15:04:29 as
	A Hierarchical Approach to All-Atom Protein Loop Prediction [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 55 (2004), pp. 351-367. by Matthew P. Jacobson, David L. Pincus, Chaya S. Rapp, et al.Tyler J. F. Day, Barry Honig, David E. Shaw, Richard A. Friesner posted to loops noe protein by anna_yershova on 2009-03-27 15:04:23 as
	Stable isotope labeling methods for protein NMR spectroscopy [My Copy] Progress in Nuclear Magnetic Resonance Spectroscopy, Vol. 53, No. 4. (November 2008), pp. 208-226. by Shin-Ya Ohki, Masatsune Kainosho posted to protein by anna_yershova on 2009-03-27 15:04:22 as
	Protein structure determination in living cells by in-cell NMR spectroscopy [My Copy] Nature, Vol. 458 (5 March 2009), pp. 102-105. by Daisuke Sakakibara, Atsuko Sasaki, Teppei Ikeya, et al.Junpei Hamatsu, Tomomi Hanashima, Masaki Mishima, Masatoshi Yoshimasu, Nobuhiro Hayashi, Tsutomu Mikawa, Markus Walchli, Brian O. Smith, Masahiro Shirakawa, Peter Guntert, Yutaka Ito posted to protein by anna_yershova on 2009-03-27 15:04:19 as
	Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops [My Copy] Algorithms in Bioinformatics, Vol. 4645 (2007), pp. 265-276. by Ankur Dhanik, Peggy Yao, Nathan Marz, et al.Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe posted to loops protein by anna_yershova on 2009-03-27 15:04:15 as
	Direct structure refinement of high molecular weight proteins against residual dipolar couplings and carbonyl chemical shift changes upon alignment: an application to maltose binding protein [My Copy] Journal of Biomolecular NMR, Vol. 21, No. 1. (September 2001), pp. 31-40. by Wing-Yiu Choy, Martin Tollinger, Geoffrey A. Mueller, Lewis E. Kay posted to csa nmr rdc protein by anna_yershova on 2009-03-27 15:04:13 as
	16-Fold Degeneracy of Peptide Plane Orientations from Residual Dipolar Couplings: Analytical Treatment and Implications for Protein Structure Determination [My Copy] Journal of American Chemical Society, Vol. xxxx, No. xxx., pp. xxx-xxx-xxx-xxx. by Jean-Christophe Hus, Loïc Salmon, Guillaume Bouvignies, Johannes Lotze, Martin Blackledge, Rafael Brüschweiler posted to nmr rdc protein by anna_yershova on 2009-03-27 15:04:11 as
	Protein Structural Analysis from Solid-State NMR-Derived Orientational Constraints [My Copy] Biophysical Journal, Vol. 72, No. 5. (May 1997), pp. 2342-2348. by J. R. Quine, M. T. Brenneman, T. A. Cross posted to loops rdc new_parameters protein by anna_yershova on 2009-03-27 15:04:11 as
	Wiley InterScience :: JOURNALS :: Proteins: Structure, Function, and Bioinformatics [My Copy] posted to protein by anna_yershova on 2009-03-27 15:04:10 as
	Analysis of Calpha Geometry in Protein Structures [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 18, No. 4. (3 February 2004), pp. 324-337. by T. J. Oldfield, R. E. Hubbard posted to loops pseudobonds protein by anna_yershova on 2009-03-27 15:03:54 as
	Modelling Protein-Protein and Protein-DNA Docking. [My Copy] Bioinformatics ― From Genomes to Drugs, \mboxT. Lengauer (editor) (2002), pp. 361-404. by M. J. E. Sternberg, G. Moont posted to protein by anna_yershova on 2009-03-27 15:03:54 as
	Using Motion Planning to Map Protein Folding Landscapes and Analyze Folding Kinetics of Known Native Structures [My Copy] Journal of Computational Biology, Vol. 10, No. 3. (2003), pp. 239-255. by N. M. Amato, K. A. Dill, G. Song posted to protein by anna_yershova on 2009-03-27 15:03:50 as
	The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles. [My Copy] Journal of Computational Chemistry, Vol. 29, No. 10. (30 July 2008), pp. 1527-42. by Ivelin Georgiev, Ryan H. Lilien, Bruce R. Donald posted to dee design donald protein by anna_yershova on 2009-03-27 15:03:50 as
	Exact solutions for internuclear vectors and backbone dihedral angles from NH residual dipolar couplings in two media, and their application in a systematic search algorithm for determining protein backbone structure [My Copy] Journal of Biomolecular NMR, No. 29. (2004), pp. 223-242. by Lincong Wang, Bruce R. Donald posted to donald nmr rdc protein by anna_yershova on 2009-03-27 15:03:49 as
	Protein structure in anisotropic environments: Development of orientational constraints [My Copy] Concepts in Magnetic Resonance, Vol. 12, No. 2. (11 February 2000), pp. 55-70. by T. S. Cross posted to loops rdc new_parameters protein by anna_yershova on 2009-03-27 15:03:47 as
	Using Motion Planning to Study Protein Folding Pathways [My Copy] Journal of Computational Biology, Vol. 9, No. 2. (2002), pp. 149-168. by G. Song, N. M. Amato posted to protein by anna_yershova on 2009-03-27 15:03:43 as
	Full cyclic coordinate descent: solving the protein loop closure problem in Cα space [My Copy] BMC Bioinformatics, Vol. 6, No. 159., pp. 2005-2005. by Wouter Boomsma, Thomas Hamelryck posted to ccd loops protein by anna_yershova on 2009-03-27 15:03:38 as
	De novo determination of protein structure by NMR using orientational and long-range order restraints [My Copy] Journal of Molecular Biology, Vol. 298, No. 5. (19 May 2000), pp. 927-936. by Jean-Christophe Hus, Dominique Marion, Martin posted to loops rdc new_parameters protein by anna_yershova on 2009-03-27 15:03:28 as
	A complete algorithm to resolve ambiguity for intersubunit NOE assignment in structure determination of symmetric homo-oligomers [My Copy] Protein Science, Vol. 2007, No. 16. (2007), pp. 69-81. by Shobha Potluri, Anthony K. Yan, Bruce R. Donald, Chris Bailey-Kellogg posted to donald nmr noe protein by anna_yershova on 2009-03-27 15:03:28 as
	Analysis of a Systematic Search-Based Algorithm for Determining Protein Backbone Structure from a Minimal Number of Residual Dipolar Couplings [My Copy] (2004), pp. 319-330. by Lincong Wang, Bruce R. Donald posted to donald nmr rdc protein by anna_yershova on 2009-03-27 15:03:22 as
	Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops [My Copy] IEEE/ACM Trans Comput Biol Bioinform, Vol. 5, No. 4. (December 2008), pp. 534-545. by Peggy Yao, Ankur Dhanik, Nathan Marz, et al.Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe, Inbal Halperin-Lansberg, Russ B. Altman posted to loops protein by anna_yershova on 2009-03-27 15:03:19 as
	Using Motion Planning to Map Protein Folding Landscapes and Analyze Folding Kinetics of Known Native Structures [My Copy] Journal of Computational Biology, Vol. 10, No. 3. (2003), pp. 239-255. by N. M. Amato, K. A. Dill, G. Song posted to protein by anna_yershova on 2009-03-27 15:03:18 as

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