Register | Log in | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

antonkratz's library [83 articles]

Recent papers added to antonkratz's library.
  • Still Stratus Not Altocumulus: Further Evidence against the Date/Party Hub Distinction
    PLoS Biology, Vol. 5, No. 6. (1 June 2007), e154.
    by Nizar N Batada, Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Laurence D Hurst, Mike Tyers
    posted to topology by antonkratz on 2008-07-03 05:49:58 as ** along with 2 people carlk winterschlaefer
  • Effects of topology on network evolution
    Nat Phys, Vol. 2, No. 8. (2006), pp. 532-536.
    by Panos Oikonomou, Philippe Cluzel
    posted to bialgorithms by antonkratz on 2008-06-25 11:33:10 as ** along with 4 people kentsis merazzle ganden watson
  • Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.
    Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15776-15781.
    by T Shiraki, S Kondo, S Katayama, K Waki, T Kasukawa, H Kawaji, R Kodzius, A Watahiki, M Nakamura, T Arakawa, S Fukuda, D Sasaki, A Podhajska, M Harbers, J Kawai, P Carninci, Y Hayashizaki
    posted to cagecluster by antonkratz on 2008-06-20 05:09:57 as ** along with 5 people setar troels_marstrand xiaobeizhao olympos gjuggler
  • The multitasking genome
    Nature Genetics, Vol. 38, No. 6., pp. 608-609.
    by Thomas R Gingeras
    posted to cagecluster by antonkratz on 2008-06-16 04:14:48 as ** along with 2 people olympos bioyang
  • Large-scale clustering of CAGE tag expression data
    BMC Bioinformatics, Vol. 8 (21 May 2007), 161.
    by Kazuro Shimokawa, Yuko Okamura-Oho, Takio Kurita, Martin C Frith, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki
    posted to promoter cagecluster by antonkratz on 2008-06-16 04:12:08 as ** along with 1 person gjuggler
  • A genomic view of alternative splicing.
    Nat Genet, Vol. 30, No. 1. (January 2002), pp. 13-19.
    by B Modrek, C Lee
    posted to as aktuell by antonkratz on 2008-06-16 03:39:59 as ** along with 6 people and 3 groups srp33 setar Cortel balicea dalloliogm mirzazadeh Web2 splicing yeast
  • Intellectual property. Patents on human genes: an analysis of scope and claims.
    Science, Vol. 307, No. 5715. (11 March 2005), pp. 1566-1567.
    by J Paradise, L Andrews, T Holbrook
    posted to no-tag by antonkratz on 2008-06-14 02:53:20 as ** along with 3 people and 1 group Enro ladygoat perrywoo CGREL
  • Molecular basis of telapre vir resistance due to V36 and T54 mutations in the NS3-4 A protease of HCV
    Genome Biology, Vol. 9 (23 January 2008), R16.
    by Christoph Welsch, Francisco S Domingues, Simone Susser, Iris Antes, Christoph Hartmann, Gabriele Mayr, Andreas Schlicker, Christoph Sarrazin, Mario Albrecht, Stefan Zeuzem, Thomas Lengauer
    posted to bialgorithms by antonkratz on 2008-05-27 07:44:29 as **
  • K-core decomposition of Internet graphs: hierarchies, self-similarity and measurement biases
    (16 Apr 2008)
    by José I Alvarez-Hamelin, Luca Dall'asta, Alain Barrat, Alessandro Vespignani
    posted to bialgorithms by antonkratz on 2008-05-25 11:19:21 as ** along with 1 person thecolourblue
  • An O(m) Algorithm for Cores Decomposition of Networks
    (25 Oct 2003)
    by V Batagelj, M Zaversnik
    posted to bialgorithms by antonkratz on 2008-05-25 11:00:08 as **
  • Using expander graphs to find vertex connectivity
    J. ACM, Vol. 53, No. 5. (September 2006), pp. 800-844.
    by Harold N Gabow
    posted to bialgorithms by antonkratz on 2008-05-14 06:23:08 as **
  • Parallel depth first search. Part I. implementation
    Int. J. Parallel Program., Vol. 16, No. 6. (December 1987), pp. 479-499.
    by Nageshwara V Rao, Vipin Kumar
    posted to bialgorithms by antonkratz on 2008-05-11 14:05:27 as **
  • notes Depth-First Search and Linear Graph Algorithms
    SIAM Journal on Computing, Vol. 1, No. 2. (1972), pp. 146-160.
    by Robert Tarjan
    posted to bialgorithms by antonkratz on 2008-05-11 13:52:43 as ** along with 3 people timotay naegele djlin
  • Evolution of gene regulatory networks: Robustness as an emergent property of evolution
    Physica A: Statistical Mechanics and its Applications, Vol. 387, No. 8-9. (15 March 2008), pp. 2170-2186.
    by Arun Krishnan, Masaru Tomita, Alessandro Giuliani
    posted to grn by antonkratz on 2008-05-09 07:41:28 as **
  • A note on two problems in connexion with graphs
    Numerische Mathematik, Vol. 1, No. 1. (1 December 1959), pp. 269-271.
    by EW Dijkstra
    posted to bialgorithms by antonkratz on 2008-05-08 06:50:25 as ** along with 2 people and 1 group ben500 hp2oo1 Video based Animation for People
  • A protein interaction map of Drosophila melanogaster.
    Science, Vol. 302, No. 5651. (5 December 2003), pp. 1727-1736.
    by L Giot, JS Bader, C Brouwer, A Chaudhuri, B Kuang, Y Li, YL Hao, CE Ooi, B Godwin, E Vitols, G Vijayadamodar, P Pochart, H Machineni, M Welsh, Y Kong, B Zerhusen, R Malcolm, Z Varrone, A Collis, M Minto, S Burgess, L McDaniel, E Stimpson, F Spriggs, J Williams, K Neurath, N Ioime, M Agee, E Voss, K Furtak, R Renzulli, N Aanensen, S Carrolla, E Bickelhaupt, Y Lazovatsky, A DaSilva, J Zhong, CA Stanyon, RL Finley, KP White, M Braverman, T Jarvie, S Gold, M Leach, J Knight, RA Shimkets, MP McKenna, J Chant, JM Rothberg
    posted to bialgorithms by antonkratz on 2008-04-28 06:14:40 as ** along with 12 people and 2 groups carlk csanford dragonrez shivaram lfriedl nuke2005 lyongu sesejun maryee xico memming eukfn kdl WetBiology
  • No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions.
    BMC Bioinformatics, Vol. 5 (19 April 2004)
    by MN Offman, RN Nurtdinov, MS Gelfand, D Frishman
    posted to domains by antonkratz on 2008-04-23 07:30:19 as ** along with 1 person ramensky
  • Prediction of Protein Functions Based on K-Cores of Protein-Protein Interaction Networks and Amino Acid Sequences
    Genome Informatics 14: 498499 (2003)
    by Md
    posted to bialgorithms by antonkratz on 2008-04-21 10:35:02 as ** along with 1 person thecolourblue
  • Peeling the yeast protein network.
    Proteomics, Vol. 5, No. 2. (February 2005), pp. 444-449.
    by S Wuchty, E Almaas
    posted to bialgorithms by antonkratz on 2008-04-21 10:24:21 as ** along with 1 person shivaram
  • iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions
    Bioinformatics, Vol. 21, No. 3. (01 February 2005), 410.
    by Robert D Finn, Mhairi Marshall, Alex Bateman
    posted to pfam by antonkratz on 2008-04-05 08:52:27 as ** along with 5 people and 2 groups mdimmic barry chad_davis choonpeng massivemayhem structural_bioinformatics Bioinformatics
  • The Pfam protein families database.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 276-280.
    by A Bateman, E Birney, L Cerruti, R Durbin, L Etwiller, SR Eddy, S Griffiths-Jones, KL Howe, M Marshall, EL Sonnhammer
    posted to pfam by antonkratz on 2008-04-05 08:50:50 as ** along with 7 people bandrewfox ziquje Cortel cjeans mirzazadeh wenhan IrinaMoreira
  • Pfam: multiple sequence alignments and HMM-profiles of protein domains.
    Nucleic Acids Res, Vol. 26, No. 1. (1 January 1998), pp. 320-322.
    by EL Sonnhammer, SR Eddy, E Birney, A Bateman, R Durbin
    posted to pfam by antonkratz on 2008-04-05 08:49:28 as ** along with 1 person cjeans
  • Inferring Alternative Splicing Patterns in Mouse from a Full-Length cDNA Library and Microarray Data
    Genome Res., Vol. 12, No. 8. (1 August 2002), pp. 1286-1293.
    by Hiromi Kochiwa, Ryosuke Suzuki, Takanori Washio, Rintaro Saito, The RIKEN Phase, Hidemasa Bono, Piero Carninci, Yasushi Okazaki, Rika Miki, Yoshihide Hayashizaki, Masaru Tomita
    posted to prof_takanori_washio by antonkratz on 2008-03-03 09:56:03 as **
  • Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa)
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1758-1763.
    by Noriyuki Kitagawa, Takanori Washio, Shunichi Kosugi, Tomoya Yamashita, Kenji Higashi, Hiroshi Yanagawa, Kenichi Higo, Koji Satoh, Yasuhiro Ohtomo, Tomomi Sunako, Kazuo Murakami, Kenichi Matsubara, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Shoshi Kikuchi, Masaru Tomita
    posted to prof_takanori_washio by antonkratz on 2008-03-03 09:50:58 as **
  • Computational comparative analyses of alternative splicing regulation using full-length cDNA of various eukaryotes.
    RNA, Vol. 10, No. 7. (July 2004), pp. 1005-1018.
    by H Itoh, T Washio, M Tomita
    posted to prof_takanori_washio by antonkratz on 2008-03-03 09:47:43 as ** along with 2 people and 1 group kaspermunch raylim Bioinformatics
  • Increase of functional diversity by alternative splicing
    Trends in Genetics, Vol. 19, No. 3. (March 2003), pp. 124-128.
    by Evgenia V Kriventseva, Ina Koch, Rolf Apweiler, Martin Vingron, Peer Bork, Mikhail S Gelfand, Shamil Sunyaev
    posted to assessing by antonkratz on 2008-02-07 05:42:54 as **
  • The Protein Identifier Cross-Reference (PICR) service: reconciling protein identifiers across multiple source databases
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Richard Cote, Philip Jones, Lennart Martens, Samuel Kerrien, Florian Reisinger, Quan Lin, Rasko Leinonen, Rolf Apweiler, Henning Hermjakob
    posted to proteins by antonkratz on 2008-01-12 07:49:29 as ** along with 5 people jyuh dullhunk niallhaslam gmonce barriot
  • Complex controls: the role of alternative promoters in mammalian genomes
    Trends in Genetics, Vol. 19, No. 11. (2003), pp. 640-648.
    by JR Landry, DL Mager, BT Wilhelm
    posted to promoter by antonkratz on 2007-11-11 06:25:50 as **
  • ASAP: the Alternative Splicing Annotation Project
    Nucl. Acids Res., Vol. 31, No. 1. (1 January 2003), pp. 101-105.
    by Christopher Lee, Levan Atanelov, Barmak Modrek, Yi Xing
    posted to assessing by antonkratz on 2007-11-05 08:59:34 as **
  • notes Large scale study of protein domain distribution in the context of alternative splicing.
    Nucleic Acids Res, Vol. 31, No. 16. (15 August 2003), pp. 4828-4835.
    by S Liu, RB Altman
    posted to assessing by antonkratz on 2007-11-05 08:42:16 as ** along with 1 person Cortel
  • notes Increase of functional diversity by alternative splicing
    Trends in Genetics, Vol. 2003, No. 19., pp. 124-128.
    by EV Kriventseva, I Koch, R Apweiler
    posted to assessing by antonkratz on 2007-11-05 08:32:39 as **
  • The Genome Sequence of Drosophila melanogaster
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2185-2195.
    by Mark D Adams, Susan E Celniker, Robert A Holt, Craig J Venter
    posted to no-tag by antonkratz on 2007-10-21 16:35:02 as ** along with 7 people brant dragonrez RMGraze Chue treangen bluto mimulus_99
  • notes Genome sequence of the nematode C. elegans: a platform for investigating biology.
    Science, Vol. 282, No. 5396. (11 December 1998), pp. 2012-2018.
    by
    posted to genome by antonkratz on 2007-10-21 16:30:52 as ** along with 7 people CitoJam sdinka Cortel treangen sujaikumar jeanfamily wormbase_ant
  • notes Finishing the euchromatic sequence of the human genome.
    Nature, Vol. 431, No. 7011. (21 October 2004), pp. 931-945.
    by
    posted to genome by antonkratz on 2007-10-21 16:04:08 as ** along with 10 people and 2 groups setar Cortel aprasad dullhunk caporaso nickluscombe joshuashen tvdbulck shikin blackm0k biomedical-nlp EBI-regulation
  • Alternative splicing and genome complexity.
    Nat Genet, Vol. 30, No. 1. (January 2002), pp. 29-30.
    by D Brett, H Pospisil, J Valcárcel, J Reich, P Bork
    posted to as by antonkratz on 2007-10-21 15:43:22 as ** along with 3 people and 1 group Ema kaspermunch PunkRock Bioinformatics
  • Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes.
    Genome Res (12 December 2005)
    by Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-Ichi I Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano
    posted to promoter by antonkratz on 2007-10-19 05:43:25 as ** along with 7 people bethsabrina yoanjacquemin ujh textoris troels_marstrand olympos nosada17
  • notes Distinct class of putative "non-conserved" promoters in humans: Comparative studies of alternative promoters of human and mouse genes
    Genome Res., Vol. 17, No. 7. (1 July 2007), pp. 1005-1014.
    by Katsuki Tsuritani, Takuma Irie, Riu Yamashita, Yuta Sakakibara, Hiroyuki Wakaguri, Akinori Kanai, Junko Mizushima-Sugano, Sumio Sugano, Kenta Nakai, Yutaka Suzuki
    posted to promoter by antonkratz on 2007-10-16 04:30:52 as ** along with 6 people and 2 groups nickluscombe djkt cabbagezs toshiaki_katayama kmdaily cisevol EBI-regulation cis-regulatory-evolution
  • Cell-free cotranslation and selection using in vitro virus for high-throughput analysis of protein–protein interactions and complexes
    Genome Research (2005), pp. 710-717.
    by Etsuko Miyamoto-Sato, Masamichi Ishizaka, Kenichi Horisawa
    posted to ivv by antonkratz on 2007-10-03 07:11:45 as **
  • In vitro display technologies: novel developments and applications
    pp. 400-405.
    by P Amstutz
    posted to ivv by antonkratz on 2007-10-03 07:08:25 as **
  • Towards a proteome-scale map of the human protein–protein interaction network
    Nature (28 September 2005)
    by Jean-François Rual, Kavitha Venkatesan, Tong Hao, Tomoko Hirozane-Kishikawa, Amélie Dricot, Ning Li, Gabriel F Berriz, Francis D Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou, Niels Klitgord, Christophe Simon, Mike Boxem, Stuart Milstein, Jennifer Rosenberg, Debra S Goldberg, Lan V Zhang, Sharyl L Wong, Giovanni Franklin, Siming Li, Joanna S Albala, Janghoo Lim, Carlene Fraughton, Estelle Llamosas, Sebiha Cevik, Camille Bex, Philippe Lamesch, Robert S Sikorski, Jean Vandenhaute, Huda Y Zoghbi, Alex Smolyar, Stephanie Bosak, Reynaldo Sequerra, Lynn Doucette-Stamm, Michael E Cusick, David E Hill, Frederick P Roth, Marc Vidal
    posted to ppi by antonkratz on 2007-10-03 07:05:16 as ** along with 18 people and 2 groups ksiek csanford dragonrez kuhn okarsligil jfr lyongu maryee benny wnpx yoh noano gurkanbebek mbeautru eukfn grahamc lpfernandes Evangelia Bioinformatics ParkinsonLab_at_MaRS
  • BLAT--the BLAST-like alignment tool.
    Genome Res, Vol. 12, No. 4. (April 2002), pp. 656-664.
    by WJ Kent
    posted to alignment by antonkratz on 2007-10-03 07:03:50 as ** along with 19 people and 1 group bozdagd gpappas talponer operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet inesdesantiago yoanjacquemin EisenLab
  • How does DNA sequence motif discovery work?
    Nature Biotechnology, Vol. 24, No. 8., pp. 959-961.
    by Patrik D'Haeseleer
    posted to alignment by antonkratz on 2007-10-03 07:02:55 as ** along with 4 people and 1 group isimpson okarsligil xi03 idonaldson Bioinformatics
  • A computer program for aligning a cDNA sequence with a genomic DNA sequence.
    Genome Res, Vol. 8, No. 9. (September 1998), pp. 967-974.
    by L Florea, G Hartzell, Z Zhang, GM Rubin, W Miller
    posted to alignment by antonkratz on 2007-10-03 07:01:48 as ** along with 1 person wenhan
  • Impact of Alternative Promoter Usage in Normal and Disease Gene Regulation
    by Anders Kvist
    posted to promoter by antonkratz on 2007-10-02 06:43:25 as **
  • alternative splicing of first exons is indicative of alternative proximal promoter usage
    posted to promoter by antonkratz on 2007-10-02 06:40:19 as **
  • Integrative approach for computationally inferring protein domain interactions.
    Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 923-929.
    by SK Ng, Z Zhang, SH Tan
    posted to interdom by antonkratz on 2007-10-01 06:37:09 as ** along with 3 people carlk dyermd phoenixzxl
  • InterDom: a database of putative interacting protein domains for validating predicted protein interactions and complexes.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 251-254.
    by SK Ng, Z Zhang, SH Tan, K Lin
    posted to interdom by antonkratz on 2007-10-01 06:36:07 as **
  • Impact of Alternative Initiation, Splicing, and Termination on the Diversity of the mRNA Transcripts Encoded by the Mouse Transcriptome
    Genome Research (2003), pp. 1290-1300.
    by Mihaela Zavolan, Shinji Kondo, Christian Schönbach, Jun Adachi, David A Hume, Riken GER Group, GSL Members, Yoshihide Hayashizaki, Terry Gaasterland
    posted to promoter as by antonkratz on 2007-09-29 06:19:45 as *****
  • The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome.
    Nucleic Acids Res, Vol. 32, No. 13. (2004), pp. 3977-3983.
    by J Leipzig, P Pevzner, S Heber
    posted to as by antonkratz on 2007-09-19 07:49:00 as ** along with 6 people and 1 group greg setar Cortel radek dchughes nedwards spliceml
  • Bioinformatics of alternative splicing and its regulation
    Brief Bioinform, Vol. 7, No. 1. (1 March 2006), pp. 55-69.
    by Liliana Florea
    posted to as by antonkratz on 2007-09-19 07:48:02 as **
    • Note: You may cite this page as: http://www.citeulike.org/user/antonkratz

    Result page: 1 2 Next RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.