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How does eukaryotic gene prediction work?

by: Michael R. Brent
Nature biotechnology, Vol. 25, No. 8. (01 August 2007), pp. 883-885, doi:10.1038/nbt0807-883  Key: citeulike:1544641

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Abstract

Computational prediction of gene structure is crucial for interpreting genomic sequences. But how do the algorithms involved work and how accurate are they? Gene-prediction programs are used primarily to annotate large, contiguous sequences generated by whole-genome sequencing. Most programs used for this purpose aim to predict the complete exon-intron structures of the protein-encoding portions of transcripts (open reading frames or ORFs).


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