anuragsethi's energylandscape [13 articles] Export

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	Multiscale characterization of protein conformational ensembles [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2009), pp. 837-851. by Amarda Shehu, Lydia E. Kavraki, Cecilia Clementi posted to sampling_method multiscale energylandscape dynamics conformational_flexibility by anuragsethi on 2009-11-13 03:53:14 as along with 4 people and 3 groups okapi barry sobolevnrm apaydin structural_bioinformatics McCammon baker-group
	From the Cover: Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations [My Copy] Proc Natl Acad Sci USA, Vol. 106, No. 45. (Nov 2009), pp. 19011-19016. by F. Noé, C. Schütte, E. Vanden Eijnden, L. Reich, T. Weikl posted to sampling_method protein markov_models freeenergy folding energylandscape dynamics conformational_flexibility by anuragsethi on 2009-11-12 23:18:41 as along with 1 person sobolevnrm
	Multi-scale characterization of the energy landscape of proteins with application to the C3D/Efb-C complex [My Copy] Proteins by Nurit Haspel, Brian V. Geisbrecht, John Lambris, Lydia Kavraki posted to sampling_method multiscale energylandscape dynamics conformational_flexibility complexformation by anuragsethi on 2009-11-10 17:13:34 as along with 1 person sobolevnrm
	Mapping the conformational transition in Src activation by cumulating the information from multiple molecular dynamics trajectories [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 10. (10 March 2009), pp. 3776-3781. by Sichun Yang, Nilesh K. Banavali, BenoÃ®t Roux posted to kinase function freeenergy energylandscape conformational_flexibility allostery by anuragsethi on 2009-11-07 16:30:16 as along with 7 people and 2 groups Diego_Prada bmduggan allmensch guhjy sobolevnrm barry jmccammon baker-group McCammon
	Computations of Standard Binding Free Energies with Molecular Dynamics Simulations [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 8. (26 February 2009), pp. 2234-2246. by Yuqing Deng, Benoît Roux posted to freeenergy energylandscape dynamics by anuragsethi on 2009-11-07 16:27:39 as along with 9 people and 2 groups flbarroso mikaellund sobolevnrm barry jmccammon willard agrossfield carlosjavierna ibuch baker-group McCammon
	Similarity Measures for Protein Ensembles [My Copy] PLoS ONE, Vol. 4, No. 1. (15 January 2009), e4203. by Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg posted to pca energylandscape dynamics conformational_flexibility by anuragsethi on 2009-11-07 16:25:41 as along with 9 people and 3 groups skywalkerus02 klexa apaydin sobolevnrm gane5h barry jmccammon reyez biehl baker-group structural_bioinformatics McCammon
	Free Energy and Kinetics of Conformational Transitions from Voronoi Tessellated Milestoning with Restraining Potentials [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 10. (13 October 2009), pp. 2589-2594. by Luca Maragliano, Eric Vanden-Eijnden, Benoît Roux posted to network kinetics freeenergy free energylandscape conformational_flexibility by anuragsethi on 2009-10-31 04:32:06 as along with 1 person sobolevnrm
	Free-energy landscape, principal component analysis, and structural clustering to identify representative conformations from molecular dynamics simulations: The myoglobin case [My Copy] Journal of Molecular Graphics and Modelling, Vol. 27, No. 8. (June 2009), pp. 889-899. by Elena Papaleo, Paolo Mereghetti, Piercarlo Fantucci, Rita Grandori, Luca De Gioia posted to pca energylandscape energyflow dynamics correlation conformational_flexibility clustering allostery by anuragsethi on 2009-10-23 07:15:44 as along with 1 person dimka
	Atomistic View of the Conformational Activation of Src Kinase Using the String Method with Swarms-of-Trajectories [My Copy] Biophysical Journal, Vol. 97, No. 4. (19 August 2009), pp. L8-L10. by Wenxun Gan, Sichun Yang, Benoît Roux posted to freeenergy energylandscape allostery by anuragsethi on 2009-10-16 02:26:57 as along with 1 person and 1 group jmccammon McCammon
	The Origin of Allosteric Functional Modulation: Multiple Pre-existing Pathways [My Copy] Vol. 17, No. 8. (12 August 2009), pp. 1042-1050. by Antonio del Sol, Chung-Jung Tsai, Buyong Ma, Ruth Nussinov posted to energylandscape energyflow allostery by anuragsethi on 2009-10-16 02:25:36 as along with 1 person sobolevnrm
	Bayesian comparison of Markov models of molecular dynamics with detailed balance constraint [My Copy] The Journal of Chemical Physics, Vol. 131, No. 4. (2009), 045106. by Sergio Bacallado, John D. Chodera, Vijay Pande posted to markov_models freeenergy energylandscape dynamics by anuragsethi on 2009-10-05 14:38:43 as along with 3 people and 1 group sobolevnrm whitead dlimmer Jiang Research Group
	Graph-theoretical identification of dissociation pathways on free energy landscapes of biomolecular interaction [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2009), NA. by Ling Wang, Boris Stumm, Volkhard Helms posted to network energylandscape complexformation by anuragsethi on 2009-09-13 05:05:59 as along with 2 people and 1 group barry sobolevnrm McCammon
	Navigating the ribosome's metastable energy landscape. [My Copy] Trends in biochemical sciences (30 July 2009) by James B. Munro, Kevin Y. Sanbonmatsu, Christian M. Spahn, Scott C. Blanchard posted to dynamics energylandscape ribosome translation by anuragsethi on 2009-08-07 05:35:40 as along with 2 people and 2 groups barry reyez structural_bioinformatics McCammon

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dynamics	42
allostery	19
conformational_flexibility	19
network	16
energylandscape	13
freeenergy	10
protein	10
evolution	6
energyflow	6
complexformation	6
coarse_grain	5
pca	5
systemsbiology	5
function	5
multiscale	5
ligandbinding	4
enm	4
review	4
bioinformatics	4
forcefield	4
sampling_method	3
markov_models	3
kinase	3
correlation	3
kinetics	2
biology	2
structure	2
rna	2
brownian_dynamics	2
ligand_binding	2
clustering	2
pka	2
mathematics	2
ions	2
community	2
percolation	1
convergence	1
folding	1
archaea	1
science	1
entropy	1
lattice_models	1
scientist	1
accelerated	1
gpu	1
localization	1
bacteria	1
ribosome	1
timedelay	1
replica	1
systems	1
water	1
coevolution	1
docking	1
nucleic	1
alignment	1
translation	1
langevin	1
free	1
regulation	1

anuragsethi's energylandscape [13 articles] Export

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