PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains Export

@article{citeulike:5979332, abstract = {Summary: The PiSQRD web resource can be used to subdivide protein structures in quasi-rigid dynamical domains. The latter are groups of amino acids behaving as approximately rigid units in the course of protein equilibrium fluctuations. The PiSQRD server takes as input a biomolecular structure and the desired fraction of protein internal fluctuations that must be accounted for by the relative rigid-body motion of the dynamical domains. Next, the lowest energy modes of fluctuation of the protein (optionally provided by the user) are calculated and used to identify the rigid subunits. The resulting optimal subdivision is returned through a web page containing both interactive graphics and detailed data output. Availability: The PiSQRD web server, which requires Java, is available free of charge for academic users at http://pisqrd.escience-lab.org. Contact: potestio@sissa.it 10.1093/bioinformatics/btp512}, author = {Aleksiev, T. and Potestio, R. and Pontiggia, F. and Cozzini, S. and Micheletti, C.}, citeulike-article-id = {5979332}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp512}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/content/25/20/2743.abstract}, citeulike-linkout-2 = {http://bioinformatics.oxfordjournals.org/content/25/20/2743.full.pdf}, citeulike-linkout-3 = {http://view.ncbi.nlm.nih.gov/pubmed/19696046}, citeulike-linkout-4 = {http://www.hubmed.org/display.cgi?uids=19696046}, day = {15}, doi = {10.1093/bioinformatics/btp512}, journal = {Bioinformatics}, keywords = {protein\_structure, rigidity}, month = {October}, number = {20}, pages = {2743--2744}, posted-at = {2009-11-08 07:58:36}, priority = {2}, title = {PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains}, url = {http://dx.doi.org/10.1093/bioinformatics/btp512}, volume = {25}, year = {2009} }

TY - JOUR ID - citeulike:5979332 L3 - citeulike-article-id:5979332 N2 - Summary: The PiSQRD web resource can be used to subdivide protein structures in quasi-rigid dynamical domains. The latter are groups of amino acids behaving as approximately rigid units in the course of protein equilibrium fluctuations. The PiSQRD server takes as input a biomolecular structure and the desired fraction of protein internal fluctuations that must be accounted for by the relative rigid-body motion of the dynamical domains. Next, the lowest energy modes of fluctuation of the protein (optionally provided by the user) are calculated and used to identify the rigid subunits. The resulting optimal subdivision is returned through a web page containing both interactive graphics and detailed data output. Availability: The PiSQRD web server, which requires Java, is available free of charge for academic users at http://pisqrd.escience-lab.org. Contact: potestio@sissa.it 10.1093/bioinformatics/btp512 IS - 20 JF - Bioinformatics EP - 2744 TI - PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains VL - 25 SP - 2743 KW - protein_structure KW - rigidity AU - Aleksiev, T AU - Potestio, R AU - Pontiggia, F AU - Cozzini, S AU - Micheletti, C PY - 2009/10/15/ UR - http://dx.doi.org/10.1093/bioinformatics/btp512 ER -