CiteULike: apaydin's determination [13 articles]

The SeqFEATURE library of 3D functional site models: comparison to existing methods and applications to protein function annotation

Genome Biology, Vol. 9 (16 January 2008), R8.

by Shirley Wu, Mike P. Liang, Russ B. Altman

posted to determination function protein by apaydin on 2009-05-22 06:44:24 as

along with 1 person kiekyon

Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target

Journal of Structural and Functional Genomics, Vol. 5, No. 4. (25 January 2005), pp. 241-254.

by H. Valafar, K. L. Mayer, C. M. Bougault, et al.P. D. Leblond, F. E. Jenney, P. S. Brereton, M. W. W. Adams, J. H. Prestegard

posted to determination fragment structure based protein rdc backbone by apaydin on 2007-10-30 18:31:59 as

De novo determination of protein backbone structure from residual dipolar couplings using Rosetta.

J Am Chem Soc, Vol. 124, No. 11. (20 March 2002), pp. 2723-2729.

by C. A. Rohl, D. Baker

posted to denovo determination protein rdc rosetta structure by apaydin on 2007-10-30 18:02:03 as

along with 1 person j3xucite

Determination of protein backbone structures from residual dipolar couplings.

Methods Enzymol, Vol. 394 (2005), pp. 175-209.

by J. H. Prestegard, K. L. Mayer, H. Valafar, G. C. Benison

posted to backbone determination protein rdc structure by apaydin on 2007-10-30 17:56:17 as

Automated NMR structure calculation with CYANA.

Methods Mol Biol, Vol. 278 (2004), pp. 353-378.

by P. Güntert

posted to cyana determination nmr noe protein protein_structure_determination structure by apaydin on 2007-09-17 16:14:40 as

along with 1 person babakap

Automated analysis of NMR assignments and structures for proteins

Current Opinion in Structural Biology, Vol. 9, No. 5. (1 October 1999), pp. 635-642.

by Hunter N. B. Moseley, Gaetano T. Montelione

posted to assignments determination nmr protein review structure by apaydin on 2007-09-07 16:31:57 as

along with 1 person kumar_physics

Protein backbone structure determination using only residual dipolar couplings from one ordering medium

Journal of Biomolecular NMR, Vol. 21, No. 4. (1 December 2001), pp. 335-347.

by Michael Andrec, Peicheng Du, Ronald M. Levy

posted to determination nmr rdc structure by apaydin on 2007-04-09 23:47:20 as

A general method for the unbiased improvement of solution NMR structures by the use of related X-Ray data, the AUREMOL-ISIC algorithm

BMC Structural Biology, Vol. 6 (26 June 2006), 14.

by Konrad Brunner, Wolfram Gronwald, Jochen M. Trenner, Klaus-Peter Neidig, Hans R. Kalbitzer

posted to determination nmr nvr protein structure by apaydin on 2007-03-27 16:00:29 as

RefDB: A database of uniformly referenced protein chemical shifts

Journal of Biomolecular NMR, Vol. V25, No. 3. (1 March 2003), pp. 173-195.

by Haiyan Zhang, Stephen Neal, David S. Wishart

posted to chemical database determination nmr protein shifts structure assignments by apaydin on 2007-03-06 15:38:14 as

Molecular Replacement

by Rossman, Blow

posted to xray structure protein mr determination by apaydin on 2007-01-29 17:32:48 as

Single-step determination of protein substructures using dipolar couplings: aid to structural genomics.

J Am Chem Soc, Vol. 123, No. 38. (26 September 2001), pp. 9490-9491.

by M. Zweckstetter, A. Bax

posted to structure rdc protein nmr dipolar determination couplings by apaydin on 2007-01-19 16:32:09 as

Fast High-Resolution Protein Structure Determination by Using Unassigned NMR Data.

Angew Chem Int Ed Engl (5 January 2007)

by Jegannath Korukottu, Monika Bayrhuber, Pierre Montaville, et al.Vinesh Vijayan, Young-Sang S. Jung, Stefan Becker, Markus Zweckstetter

posted to determination nmr protein structure by apaydin on 2007-01-08 21:37:24 as

Protein structure prediction using sparse dipolar coupling data.

Nucleic Acids Res, Vol. 32, No. 2. (2004), pp. 551-561.

by Y. Qu, J. T. Guo, V. Olman, Y. Xu

posted to alignment database determination fold homology nmr protein rdc structure by apaydin on 2005-10-05 23:04:04 as read

	The SeqFEATURE library of 3D functional site models: comparison to existing methods and applications to protein function annotation [My Copy] Genome Biology, Vol. 9 (16 January 2008), R8. by Shirley Wu, Mike P. Liang, Russ B. Altman posted to determination function protein by apaydin on 2009-05-22 06:44:24 as along with 1 person kiekyon
	Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target [My Copy] Journal of Structural and Functional Genomics, Vol. 5, No. 4. (25 January 2005), pp. 241-254. by H. Valafar, K. L. Mayer, C. M. Bougault, et al.P. D. Leblond, F. E. Jenney, P. S. Brereton, M. W. W. Adams, J. H. Prestegard posted to determination fragment structure based protein rdc backbone by apaydin on 2007-10-30 18:31:59 as
	De novo determination of protein backbone structure from residual dipolar couplings using Rosetta. [My Copy] J Am Chem Soc, Vol. 124, No. 11. (20 March 2002), pp. 2723-2729. by C. A. Rohl, D. Baker posted to denovo determination protein rdc rosetta structure by apaydin on 2007-10-30 18:02:03 as along with 1 person j3xucite
	Determination of protein backbone structures from residual dipolar couplings. [My Copy] Methods Enzymol, Vol. 394 (2005), pp. 175-209. by J. H. Prestegard, K. L. Mayer, H. Valafar, G. C. Benison posted to backbone determination protein rdc structure by apaydin on 2007-10-30 17:56:17 as
	Automated NMR structure calculation with CYANA. [My Copy] Methods Mol Biol, Vol. 278 (2004), pp. 353-378. by P. Güntert posted to cyana determination nmr noe protein protein_structure_determination structure by apaydin on 2007-09-17 16:14:40 as along with 1 person babakap
	Automated analysis of NMR assignments and structures for proteins [My Copy] Current Opinion in Structural Biology, Vol. 9, No. 5. (1 October 1999), pp. 635-642. by Hunter N. B. Moseley, Gaetano T. Montelione posted to assignments determination nmr protein review structure by apaydin on 2007-09-07 16:31:57 as along with 1 person kumar_physics
	Protein backbone structure determination using only residual dipolar couplings from one ordering medium [My Copy] Journal of Biomolecular NMR, Vol. 21, No. 4. (1 December 2001), pp. 335-347. by Michael Andrec, Peicheng Du, Ronald M. Levy posted to determination nmr rdc structure by apaydin on 2007-04-09 23:47:20 as
	A general method for the unbiased improvement of solution NMR structures by the use of related X-Ray data, the AUREMOL-ISIC algorithm [My Copy] BMC Structural Biology, Vol. 6 (26 June 2006), 14. by Konrad Brunner, Wolfram Gronwald, Jochen M. Trenner, Klaus-Peter Neidig, Hans R. Kalbitzer posted to determination nmr nvr protein structure by apaydin on 2007-03-27 16:00:29 as
	RefDB: A database of uniformly referenced protein chemical shifts [My Copy] Journal of Biomolecular NMR, Vol. V25, No. 3. (1 March 2003), pp. 173-195. by Haiyan Zhang, Stephen Neal, David S. Wishart posted to chemical database determination nmr protein shifts structure assignments by apaydin on 2007-03-06 15:38:14 as
	Molecular Replacement [My Copy] by Rossman, Blow posted to xray structure protein mr determination by apaydin on 2007-01-29 17:32:48 as
	Single-step determination of protein substructures using dipolar couplings: aid to structural genomics. [My Copy] J Am Chem Soc, Vol. 123, No. 38. (26 September 2001), pp. 9490-9491. by M. Zweckstetter, A. Bax posted to structure rdc protein nmr dipolar determination couplings by apaydin on 2007-01-19 16:32:09 as
	Fast High-Resolution Protein Structure Determination by Using Unassigned NMR Data. [My Copy] Angew Chem Int Ed Engl (5 January 2007) by Jegannath Korukottu, Monika Bayrhuber, Pierre Montaville, et al.Vinesh Vijayan, Young-Sang S. Jung, Stefan Becker, Markus Zweckstetter posted to determination nmr protein structure by apaydin on 2007-01-08 21:37:24 as
	Protein structure prediction using sparse dipolar coupling data. [My Copy] Nucleic Acids Res, Vol. 32, No. 2. (2004), pp. 551-561. by Y. Qu, J. T. Guo, V. Olman, Y. Xu posted to alignment database determination fold homology nmr protein rdc structure by apaydin on 2005-10-05 23:04:04 as

apaydin's determination [13 articles] Export

apaydin's tags

nmr	188
protein	108
protein_dynamics	106
protein_folding	66
review	52
folding	51
protein_structure_determination	43
structure	39
assignments	39
protein_ligand_binding	34
rdc	26
protein_design	26
prediction	19
protein_protein_binding	18
resonance_assignment	18
tutorial	18
dynamics	16
ligand-protein-binding	15
normal_mode_analysis	15
unfolded_state	14
allostery	14
chemical	14
rate_determination	14
prm	13
backbone	13
determination	13
phi_value_analysis	13
pfold	12
model	12
noe	11
nma	11
shift	10
rate	10
misfolding	10
x-ray	9
molecular_dynamics	9
flexibility	9
sba	9
protein_structure	9
noe_assignment	9
voting	8
design	8
docking	8
sampling	8
motion	8
function	7
molecular	7
rotamer_libraries	7
probabilistic_roadmaps	7
rate_prediction	7
database	7
homology	7
protein_protein_interactions	6
unassigned_nmr_data	6
conformational	6
srs	6
rotamer	6
planning	6
alignment	6
algorithms	6
ensemble	6
go_model	6
side_chain_flexibility	5
relaxation	5
markov_chains	5
nvr	5
chemical_shift	5
structural	5
scoring	5
binding	5
monte_carlo	5
programming	5
resonance	5
ensembles	5
sidechain	5
based	5
enm	5
binding_site	5
entropy	4
coarse_grained	4
ligand_flexibility	4
analysis	4
hiv_integrase	4
drug	4
hydrogen_exchange	4
4d-noesy	4
kinetics	4
network	4
denatured	4
learning	4
webserver	4
inverse_kinematics	4
shifts	4
energy	3
consensus	3
diffusion	3
parameter	3
loop	3
fast	3
protein_structure_prediction	3
linear	3
intermediate	3
gnm	3
integer	3
teaching	3
search	3
saxs	3
molecular_replacement	3
elastic	3
backbone_flexibility	3
simulations	3
enzyme_redesign	3
rigidity	3
transition_state_ensemble	3
fold_determination	3
aggregation	3
denatured_state	3
python	3
collision	3
torsional_angle	3
order	3
pathways	3
energy_landscape	2
contacts	2
data	2
kinematics	2
hotspot	2
landscape	2
reference	2
xray	2
colony	2
unfolded	2
inverse	2
phi	2
optimization	2
solvent_effects	2
visualization	2
modeling	2
modelling	2
efficient_energy_minimization	2
value	2
acbp	2
transition	2
ligand	2
genetic	2
negative_design	2
couplings	2
ant	2
markov_random_field	2
cheminformatics	2
index	2
systems_biology	2
mass_spectrometry	2
replacement	2
mfpt	2
corex	2
lattice	2
native	2
simulated	2
cap	2
finkelstein	2
closure	2
bipartite_matching	2
equilibrium	2
molecular_mechanics	2
nrps	2
hydrogen_bonds	2
gpcr	2
approximation	2
space	2
tool	2
methods	2
metadynamics	2
funnel	2
fold	2
detection	2
hp	2
secondary	2
kstar	2
comparison	2
solvation	2
fragment	2
recognition	2
milestoning	2
diversity	2
incremental	2
noise_stability	2
path	2
annealing	2
anisotropic	1
germany	1
dipolar	1
folder	1
local	1
mars	1
pre	1
rna	1
peptides	1
manipulation_planning	1
bpti	1
supercomputer	1
pnas	1
drug_discovery	1
configurational	1
rosetta	1
go	1
classification	1
constraint_satisfaction	1
water_hsqc	1
time	1
mle	1
perspectives	1
library	1
benchmark	1
foldtraj	1
sequence	1
residue	1
robotics	1
principal	1
tensor	1
distance_measure	1
kl_distance	1
complex	1
atomic	1
difference_map	1
ribosome	1
score	1
ubiquitin	1
graph_representation	1
psi-value-analysis	1
thermodynamic	1
assembly	1
content	1
functional_classification	1
macromolecular	1
protein_dna_binding	1
experimental	1
cryo	1
multidomain	1
metaheuristics	1
free	1
multiscale	1
calculation	1
flexibiliy	1
thermodynamics	1
maps	1
study	1
electrostatics	1
communication	1
opinion	1
svm	1
umbrella_sampling	1
em	1
essential_dynamics	1
entropy_estimation	1
pca	1
paramagnetic_quenching	1
conformational_sampling	1
partial	1
comment	1
component	1
organization	1
bayesian_methods	1
cdc25	1
d-amino-acid	1
geometric	1
tools	1
multipole	1
repressor	1
state	1
non-holonomic	1
stochasticity	1
charges	1
simplified	1
elnemo	1
hd_exchange_rate	1
density	1
redcat	1
chevron	1
hausdorff	1
drug_design	1
task_planning	1
waiting_time	1
graph_cuts	1
refolding	1
md	1
energy_function	1
electron_microscopy	1
modeller	1
lambda	1
kinetic	1
sequential	1
supramolecular	1
propagation	1
protein_stability	1
ruby	1
example	1
software	1
inverse_folding	1
plot	1
function_prediction	1
structural_ensemble	1
anm	1
machine_learning	1
evolution	1
geometry	1
homologous	1
completeness	1
empirical_scoring_function	1
cyana	1
cloud_computing	1
advice	1
mr	1
finding	1
exchange	1
empirical	1
tabu	1
averaging	1
branch_and_bound	1
refinement	1
froda	1
hardware	1
initiative	1
master	1
sh3	1
topology	1
linguistics	1
constant	1
screening	1
disordered	1
wide-angle	1
opensource	1
scattering	1
optimum	1
kariyer	1
croem	1
pattern	1
mirna	1
fft	1
belief	1
dimensionality_reduction	1
denovo	1
replica	1
experiments	1
complete	1
mining	1
synthesis	1
meta	1
placement	1
scoring_function	1
crystallography	1
comparing_different_motion_models	1
equation	1
long	1
molecular_design	1
ddg	1
membrane	1
information	1
foldamer	1
graph_theory	1
motif	1
wavelets	1
research	1
disordered_proteins	1
c-alpha	1