apaydin's prediction [19 articles] Export

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	EASYMIFS and SITEHOUND: a toolkit for the identification of ligand-binding sites in protein structures [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3185-3186. by Dario Ghersi, Roberto Sanchez posted to prediction ligand-protein-binding binding_site by apaydin on 2009-11-23 20:46:07 as along with 1 person zimbo1
	Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (30 October 2009), 365. by Stefano Lise, Cedric Archambeau, Massimiliano Pontil, David Jones posted to protein_protein_binding prediction hotspot by apaydin on 2009-11-08 07:57:00 as along with 6 people and 1 group sillitoe kshameer zwang phoenixzxl higueruelo neils Orengo Group Journal Picks
	TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. [My Copy] Journal of biomolecular NMR, Vol. 44, No. 4. (August 2009), pp. 213-223. by Yang Shen, Frank Delaglio, Gabriel Cornilescu, Ad Bax posted to backbone nmr prediction torsional_angle by apaydin on 2009-06-26 09:38:32 as along with 4 people dgront laurabailey viktor21614 anna_yershova
	Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. 1513-1520. by Nurcan Tuncbag, Attila Gursoy, Ozlem Keskin posted to hotspot prediction protein_protein_interactions by apaydin on 2009-05-29 11:03:25 as along with 5 people and 1 group dfdong ubcg08l marti kshameer phoenixzxl structural_bioinformatics
	Protein conformational flexibility prediction using machine learning. [My Copy] Journal of magnetic resonance (San Diego, Calif. : 1997), Vol. 192, No. 1. (May 2008), pp. 37-47. by O. Trott, K. Siggers, B. Rost, A. G. Palmer posted to nmr order parameter prediction structure by apaydin on 2009-05-03 07:04:57 as
	Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology [My Copy] Journal of Biomolecular NMR, Vol. 38, No. 4. (August 2007), pp. 289-302. by Shen, Yang, Bax, Ad posted to chemical nmr prediction shift tool by apaydin on 2009-03-22 16:06:42 as
	Predicting Protein Folding Kinetics Via Temporal Logic Model Checking [My Copy] Algorithms in Bioinformatics (2007), pp. 252-264. by Christopher Langmead, Sumit Jha posted to folding kinetics prediction protein rate by apaydin on 2009-01-07 14:36:23 as
	Can Morphing Methods Predict Intermediate Structures? [My Copy] Journal of molecular biology (30 October 2008) by Dahlia R R. Weiss, Michael Levitt posted to intermediate prediction protein_folding structure by apaydin on 2009-01-05 08:33:09 as along with 1 person and 2 groups barry structural_bioinformatics McCammon
	Consistent blind protein structure generation from NMR chemical shift data [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4685-4690. by Yang Shen, Oliver Lange, Frank Delaglio, et al.Paolo Rossi, James M. Aramini, Gaohua Liu, Alexander Eletsky, Yibing Wu, Kiran K. Singarapu, Alexander Lemak, Alexandr Ignatchenko, Cheryl H. Arrowsmith, Thomas Szyperski, Gaetano T. Montelione, David Baker, Ad Bax posted to chemical nmr prediction protein shifts structure by apaydin on 2008-07-05 20:30:20 as along with 7 people and 1 group siggi84 babakap dgront zwang biehl sunhwan skoddet Nielsen group
	A generative, probabilistic model of local protein structure [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 26. (1 July 2008), pp. 8932-8937. by Wouter Boomsma, Kanti V. Mardia, Charles C. Taylor, Jesper Ferkinghoff-Borg, Anders Krogh, Thomas Hamelryck posted to prediction protein structure by apaydin on 2008-07-02 17:55:01 as along with 5 people j3xucite bertelsen biehl zwang mijam
	Prediction of Aggregation-Prone Regions in Structured Proteins [My Copy] Journal of Molecular Biology, Vol. 380, No. 2. (04 July 2008), pp. 425-436. by Gian G. Tartaglia, Amol P. Pawar, Silvia Campioni, Christopher M. Dobson, Fabrizio Chiti, Michele Vendruscolo posted to aggregation prediction protein structure by apaydin on 2008-05-14 15:18:38 as
	High-resolution structure prediction and the crystallographic phase problem [My Copy] Nature, Vol. 450, No. 7167. (14 October 2007), pp. 259-264. by Bin Qian, Srivatsan Raman, Rhiju Das, et al.Philip Bradley, Airlie J. McCoy, Randy J. Read, David Baker posted to molecular prediction protein replacement structure by apaydin on 2008-02-18 00:04:34 as along with 16 people and 2 groups bmduggan newton1234 aheilbut jwm eckart_bindewald ffranca dgront massivemayhem cjeans zwang cactus sobolevnrm boris_aguilar Ema chenway ardalby baker-group OPIG
	Use of residual dipolar couplings as restraints in ab initio protein structure prediction. [My Copy] Biopolymers, Vol. 70, No. 4. (December 2003), pp. 548-562. by T. Haliloglu, A. Kolinski, J. Skolnick posted to lattice model prediction protein rdc structure by apaydin on 2007-10-30 18:08:24 as along with 1 person j3xucite
	Direct use of unassigned resonances in NMR structure calculations with proxy residues. [My Copy] J Am Chem Soc, Vol. 128, No. 23. (14 June 2006), pp. 7566-7571. by E. AB, D. J. Pugh, R. Kaptein, R. Boelens, A. M. Bonvin posted to calculation nmr prediction protein structure by apaydin on 2007-06-02 16:38:50 as
	The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy. [My Copy] Biochemistry, Vol. 31, No. 6. (18 February 1992), pp. 1647-1651. by D. S. Wishart, B. D. Sykes, F. M. Richards posted to chemical nmr prediction secondary shift structure by apaydin on 2007-03-06 15:50:15 as along with 1 person laurabailey
	Folding rates and low-entropy-loss routes of two-state proteins. [My Copy] J Mol Biol, Vol. 329, No. 3. (6 June 2003), pp. 585-598. by T. R. Weikl, K. A. Dill posted to srs rate protein prediction folding entropy by apaydin on 2007-01-19 21:39:58 as
	Large scale testing of chemical shift prediction algorithms and improved machine learning-based approaches to shift prediction [My Copy] Computational Systems Bioinformatics Conference, 2004. CSB 2004. Proceedings. 2004 IEEE (2004), pp. 712-713. by K. Arun, C. J. Langmead posted to chemical meta methods prediction shift by apaydin on 2006-11-08 14:23:24 as along with 1 person kumar_physics
	folding rate prediction [My Copy] by Finkelstein posted to analysis finkelstein folding phi prediction rate value by apaydin on 2006-10-30 21:30:31 as
	Protein folding dynamics: quantitative comparison between theory and experiment. [My Copy] Biochemistry, Vol. 37, No. 16. (21 April 1998), pp. 5337-5343. by R. E. Burton, J. K. Myers, T. G. Oas posted to collision diffusion lambda model prediction rate repressor by apaydin on 2006-05-09 22:29:00 as

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nmr	188
protein	108
protein_dynamics	106
protein_folding	66
review	52
folding	51
protein_structure_determination	43
assignments	39
structure	39
protein_ligand_binding	34
protein_design	26
rdc	26
prediction	19
protein_protein_binding	18
resonance_assignment	18
tutorial	18
dynamics	16
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allostery	14
chemical	14
rate_determination	14
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backbone	13
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pfold	12
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noe	11
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rate	10
shift	10
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x-ray	9
design	8
docking	8
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em	1
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md	1
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organization	1
paramagnetic_quenching	1
partial	1
pattern	1
pca	1
peptides	1
perspectives	1
placement	1
plot	1
pnas	1
pre	1
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redcat	1
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research	1
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waiting_time	1
water_hsqc	1
wavelets	1
wide-angle	1

apaydin's prediction [19 articles] Export

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