apaydin's protein_structure_determination [43 articles] Export

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	Protein three-dimensional structure determination and sequence-specific assignment of 13C and 15N-separated NOE data. A novel real-space ab initio approach. [My Copy] Journal of molecular biology, Vol. 243, No. 4. (4 November 1994), pp. 696-718. by P. J. Kraulis posted to protein_structure_determination 4d-noesy by apaydin on 2009-10-21 16:51:59 as along with 1 person pekrau
	Protein structure calculation with data imputation: the use of substitute restraints [My Copy] Journal of Biomolecular NMR, Vol. 45, No. 4. (1 December 2009), pp. 397-411. by Carolina Cano, Konrad Brunner, Kumaran Baskaran, Ralph Elsner, Claudia Munte, Hans Kalbitzer posted to protein_structure_determination noe nmr by apaydin on 2009-10-19 20:06:42 as along with 1 person kumar_physics
	Automated combined assignment of NOESY spectra and three-dimensional protein structure determination [My Copy] Journal of Biomolecular NMR, Vol. 10, No. 4. (21 December 1997), pp. 351-362. by Christian Mumenthaler, Peter Güntert, Werner Braun, Kurt Wüthrich posted to protein_structure_determination noe_assignment nmr by apaydin on 2009-10-18 20:24:12 as
	Protein NMR Structure Determination with Automated NOE Assignment Using the New Software CANDID and the Torsion Angle Dynamics Algorithm DYANA [My Copy] Journal of Molecular Biology, Vol. 319, No. 1. (24 May 2002), pp. 209-227. by Torsten Herrmann, Peter Güntert, Kurt Wüthrich posted to protein_structure_determination noe_assignment nmr by apaydin on 2009-10-15 20:00:15 as along with 3 people kumar_physics stharward lna
	De novo protein structure determination using sparse NMR data [My Copy] Journal of Biomolecular NMR, Vol. 18, No. 4. (1 December 2000), pp. 311-318. by Peter M. Bowers, Charlie E. M. Strauss, David Baker posted to nmr protein_structure_determination by apaydin on 2009-07-10 08:20:56 as
	GeNMR: a web server for rapid NMR-based protein structure determination. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009) by M. Berjanskii, P. Tang, J. Liang, et al.J. A. Cruz, J. Zhou, Y. Zhou, E. Bassett, C. MacDonell, P. Lu, G. Lin, D. S. Wishart posted to nmr protein_structure_determination webserver by apaydin on 2009-05-03 20:45:50 as along with 2 people nuin viktor21614
	Wiley InterScience :: Article :: HTML Full Text [My Copy] by Lattman posted to nmr protein_structure_determination x-ray xray by apaydin on 2009-03-22 10:16:55 as
	Automated NMR structure calculation with CYANA. [My Copy] Methods Mol Biol, Vol. 278 (2004), pp. 353-378. by P. Güntert posted to cyana determination nmr noe protein protein_structure_determination structure by apaydin on 2007-09-17 16:14:40 as along with 1 person babakap
	Automated Protein Structure Determination from NMR Spectra [My Copy] J. Am. Chem. Soc. (2006) by Blanca López-Méndez, Peter Güntert posted to nmr protein_structure_determination by apaydin on 2006-09-21 14:40:54 as
	Relation between native ensembles and experimental structures of proteins. [My Copy] Proc Natl Acad Sci (7 July 2006) by Best Rb, K. Lindorff-Larsen, Depristo Ma, M. Vendruscolo posted to backbone_flexibility ensembles protein_dynamics protein_structure_determination by apaydin on 2006-07-23 13:23:28 as
	A topology-constrained distance network algorithm for protein structure determination from NOESY data. [My Copy] Proteins, Vol. 62, No. 3. (15 March 2006), pp. 587-603. by Y. J. Huang, R. Tejero, R. Powers, G. T. Montelione posted to nmr noe protein_structure_determination by apaydin on 2006-05-06 16:55:27 as
	Decoy Models for Protein Structure Comparison Score Normalisation [My Copy] Journal of Molecular Biology, Vol. 357, No. 2. (24 March 2006), pp. 676-699. by William R. Taylor posted to protein_structure_determination by apaydin on 2006-03-02 04:26:44 as
	Weighting of experimental evidence in macromolecular structure determination. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 6. (7 February 2006), pp. 1756-1761. by M. Habeck, W. Rieping, M. Nilges posted to nmr protein_structure_determination by apaydin on 2006-02-24 20:35:06 as
	PLoS Computational Biology: Traditional Biomolecular Structure Determination by NMR Spectroscopy Allows for Major Errors [My Copy] by Vriend posted to nmr protein_structure_determination by apaydin on 2006-02-14 21:48:11 as
	Determination of protein backbone structure using only residual dipolar couplings. [My Copy] J Am Chem Soc, Vol. 123, No. 7. (21 February 2001), pp. 1541-1542. by J. C. Hus, D. Marion, M. Blackledge posted to protein_structure_determination rdc by apaydin on 2006-02-14 21:19:51 as
	supplemenrary info hd exchange rates for ubq [My Copy] by Prestegard posted to hydrogen_exchange nmr protein_structure_determination resonance_assignment by apaydin on 2006-02-13 19:58:10 as
	Protein structure elucidation from NMR proton densities [My Copy] PNAS, Vol. 99, No. 10. (14 May 2002), pp. 6713-6718. by Alexander Grishaev, M. Llinás posted to nmr noe_assignment protein_structure_determination resonance_assignment by apaydin on 2006-02-13 14:51:52 as
	CLOUDS, a protocol for deriving a molecular proton density via NMR [My Copy] PNAS, Vol. 99, No. 10. (14 May 2002), pp. 6707-6712. by Alexander Grishaev, M. Llinás posted to molecular_replacement nmr noe noe_assignment protein_structure_determination rdc resonance_assignment unassigned_nmr_data by apaydin on 2006-02-13 14:49:21 as along with 1 person rph
	NMR studies in aqueous solution fail to identify significant conformational differences between the monomeric forms of two Alzheimer peptides with widely different plaque-competence, A beta(1-40)(ox) and A beta(1-42)(ox). [My Copy] Eur J Biochem, Vol. 268, No. 22. (November 2001), pp. 5930-5936. by R. Riek, P. Güntert, H. Döbeli, B. Wipf, K. Wüthrich posted to misfolding nmr protein_structure_determination unfolded_state by apaydin on 2006-02-13 13:41:54 as
	Characterization of molecular alignment in aqueous suspensions of Pf1 bacteriophage. [My Copy] J Biomol NMR, Vol. 20, No. 4. (August 2001), pp. 365-377. by M. Zweckstetter, A. Bax posted to nmr protein_structure_determination rdc unfolded_state by apaydin on 2006-02-13 13:41:12 as
	PLoS Computational Biology: Traditional Biomolecular Structure Determination by NMR Spectroscopy Allows for Major Errors [My Copy] posted to nmr protein_structure_determination by apaydin on 2006-02-10 15:44:10 as
	paper-2005-RIBRA-An_Error-Tolerant_Algorithm_for_the_NMR_Backbone_Assignment_Problem.pdf (application/pdf Object) [My Copy] posted to nmr protein_structure_determination resonance_assignment by apaydin on 2006-02-07 21:25:11 as
	Mass spectrometry assisted assignment of NMR resonances in 15N labeled proteins. [My Copy] J Am Chem Soc, Vol. 126, No. 44. (10 November 2004), pp. 14377-14379. by L. Feng, R. Orlando, J. H. Prestegard posted to hydrogen_exchange mass_spectrometry nmr protein_structure_determination resonance_assignment unassigned_nmr_data by apaydin on 2006-02-02 16:16:22 as
	Strategy for supplementing structure calculations using limited data with hydrophobic distance restraints. [My Copy] Proteins, Vol. 56, No. 1. (1 July 2004), pp. 117-129. by A. T. Alexandrescu posted to nmr protein_structure_determination by apaydin on 2005-12-29 04:06:40 as
	AutoLink: automated sequential resonance assignment of biopolymers from NMR data by relative-hypothesis-prioritization-based simulated logic. [My Copy] J Magn Reson, Vol. 174, No. 1. (May 2005), pp. 133-151. by J. E. Masse, R. Keller posted to nmr protein_structure_determination by apaydin on 2005-12-16 04:08:49 as
	Protein structures from NMR. [My Copy] Biochemistry, Vol. 27, No. 15. (26 July 1988), pp. 5389-5395. by R. Kaptein, R. Boelens, R. M. Scheek, W. F. van Gunsteren posted to nmr protein_structure_determination review tutorial by apaydin on 2005-11-29 17:24:06 as
	Refinement of Multidomain Protein Structures by Combination of Solution Small-Angle X-ray Scattering and NMR Data [My Copy] Journal of the American Chemical Society, Vol. 127, No. 47. (1 November 2005), pp. 16621-16628. by Alexander Grishaev, Justin Wu, Jill Trewhella, Ad Bax posted to nmr protein_structure_determination saxs by apaydin on 2005-11-28 02:18:19 as along with 1 person dgront
	Ab initio construction of polypeptide fragments: efficient generation of accurate, representative ensembles. [My Copy] Proteins, Vol. 51, No. 1. (1 April 2003), pp. 41-55. by M. A. DePristo, P. I. de Bakker, S. C. Lovell, T. L. Blundell posted to protein_dynamics protein_structure_determination by apaydin on 2005-11-18 18:47:42 as
	An Efficient Randomized Algorithm for Contact-Based NMR Backbone Resonance Assignment [My Copy] by Hetunandan Kamichetty, Chris Bailey-Kellogg, Gopal Pandurangan posted to nmr protein_structure_determination by apaydin on 2005-11-15 15:19:19 as
	A random graph approach to NMR sequential assignment. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 12, No. 6. (g 2005), pp. 569-583. by Chris Bailey-Kellogg, Sheetal Chainraj, Gopal Pandurangan posted to noe protein_structure_determination by apaydin on 2005-11-15 15:17:53 as along with 1 person babakap
	Simultaneous determination of protein structure and dynamics [My Copy] Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132. by Kresten Lindorff-Larsen, Robert B. Best, Mark A. Depristo, Christopher M. Dobson, Michele Vendruscolo posted to nmr protein_dynamics protein_structure_determination by apaydin on 2005-11-09 21:29:29 as along with 15 people and 3 groups Diego_Prada xdeupi A_Coletta_Thesis karbak barry lillekatt baaden lna dgront allmensch daevans rsantana jlh64 biehl rph Structural Biology Group TorVergata structural_bioinformatics Bioinformatics
	noe assignment of sidechains [My Copy] by Wang, Donald posted to nmr noe_assignment protein_structure_determination by apaydin on 2005-10-26 21:41:08 as
	Automation of NMR structure determination of proteins [My Copy] Current Opinion in Structural Biology, Vol. 14, No. 5. (October 2004), pp. 547-553. by A. Altieri, R. Byrd posted to nmr protein_structure_determination review by apaydin on 2005-09-24 20:13:20 as along with 3 people siggi84 kumar_physics xdeupi
	ABACUS, a direct method for protein NMR structure computation via assembly of fragments. [My Copy] Proteins, Vol. 61, No. 1. (3 August 2005), pp. 36-43. by A Grishaev, C A A. Steren, B Wu, A Pineda-Lucena, C Arrowsmith, M Llinás posted to nmr noe_assignment protein_structure_determination by apaydin on 2005-08-31 17:00:01 as along with 1 person babakap
	PISTACHIO server V0.1 Beta [My Copy] by Hamid R. Eghbalnia, Arash Bahrami, Liya Wang posted to nmr protein_structure_determination by apaydin on 2005-08-23 17:44:52 as
	Error distribution derived NOE distance restraints [My Copy] (13 July 2005) by Nilges, Habeck, O'Donoghue, Rieping posted to protein_structure_determination by apaydin on 2005-08-15 21:27:47 as
	scwrl3protsci.pdf [My Copy] by Dunbrack posted to protein_structure_determination by apaydin on 2005-08-15 16:14:39 as
	On the potential of normal-mode analysis for solving difficult molecular-replacement problems. [My Copy] Acta Crystallogr D Biol Crystallogr, Vol. 60, No. Pt 4. (April 2004), pp. 796-799. by K. Suhre, Y. H. Sanejouand posted to molecular_replacement protein_dynamics protein_structure_determination unassigned_nmr_data by apaydin on 2005-08-12 21:58:44 as along with 2 people aqeel martainn
	On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 18. (4 May 2004), pp. 6957-6962. by M. Delarue, P. Dumas posted to protein_dynamics protein_structure_determination by apaydin on 2005-08-11 22:07:05 as along with 1 person aqeel
	Using quaternions to calculate RMSD. [My Copy] J Comput Chem, Vol. 25, No. 15. (30 November 2004), pp. 1849-1857. by E. A. Coutsias, C. Seok, K. A. Dill posted to efficient_energy_minimization protein_folding protein_ligand_binding protein_structure_determination by apaydin on 2005-08-09 15:50:55 as along with 6 people eskay Diego_Prada BragilMassoud nachtalp dgront rabio
	A random graph approach to NMR sequential assignment [My Copy] In RECOMB '04: Proceedings of the eighth annual international conference on Resaerch in computational molecular biology (2004), pp. 58-67. by Chris Bailey-Kellogg, Sheetal Chainraj, Gopal Pandurangan posted to nmr protein_structure_determination by apaydin on 2005-08-05 21:13:19 as along with 1 person j3xucite
	Inferential Structure Determination [My Copy] Science, Vol. 309, No. 5732. (08 July 2005), pp. 303-306. by Wolfgang Rieping, Michael Habeck, Michael Nilges posted to nmr noe protein_structure_determination by apaydin on 2005-08-04 20:01:07 as along with 3 people kumar_physics dgront rsantana
	relaxation processes nmr [My Copy] physical review letters (1955) by Solomon posted to nmr noe protein_structure_determination by apaydin on 2005-05-20 22:24:28 as

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nmr	188
protein	108
protein_dynamics	106
protein_folding	66
review	52
folding	51
protein_structure_determination	43
assignments	39
structure	39
protein_ligand_binding	34
protein_design	26
rdc	26
prediction	19
protein_protein_binding	18
resonance_assignment	18
tutorial	18
dynamics	16
normal_mode_analysis	15
allostery	14
chemical	14
rate_determination	14
unfolded_state	14
backbone	13
determination	13
phi_value_analysis	13
prm	13
model	12
pfold	12
ligand-protein-binding	11
nma	11
noe	11
misfolding	10
rate	10
shift	10
flexibility	9
molecular_dynamics	9
noe_assignment	9
protein_structure	9
sba	9
x-ray	9
design	8
docking	8
motion	8
sampling	8
voting	8
database	7
function	7
homology	7
molecular	7
probabilistic_roadmaps	7
rate_prediction	7
rotamer_libraries	7
algorithms	6
alignment	6
conformational	6
ensemble	6
go_model	6
planning	6
protein_protein_interactions	6
rotamer	6
srs	6
unassigned_nmr_data	6
based	5
binding	5
chemical_shift	5
enm	5
ensembles	5
markov_chains	5
monte_carlo	5
nvr	5
programming	5
relaxation	5
resonance	5
scoring	5
sidechain	5
side_chain_flexibility	5
structural	5
4d-noesy	4
analysis	4
coarse_grained	4
denatured	4
drug	4
entropy	4
hiv_integrase	4
hydrogen_exchange	4
inverse_kinematics	4
kinetics	4
learning	4
ligand_flexibility	4
network	4
shifts	4
webserver	4
aggregation	3
backbone_flexibility	3
collision	3
consensus	3
denatured_state	3
diffusion	3
elastic	3
energy	3
enzyme_redesign	3
fast	3
fold_determination	3
gnm	3
integer	3
intermediate	3
linear	3
loop	3
molecular_replacement	3
order	3
parameter	3
pathways	3
protein_structure_prediction	3
python	3
rigidity	3
saxs	3
search	3
simulations	3
teaching	3
torsional_angle	3
transition_state_ensemble	3
acbp	2
annealing	2
ant	2
approximation	2
bipartite_matching	2
cap	2
cheminformatics	2
closure	2
colony	2
comparison	2
contacts	2
corex	2
couplings	2
data	2
detection	2
diversity	2
efficient_energy_minimization	2
energy_landscape	2
equilibrium	2
finkelstein	2
fold	2
fragment	2
funnel	2
genetic	2
gpcr	2
hotspot	2
hp	2
hydrogen_bonds	2
incremental	2
index	2
inverse	2
kinematics	2
kstar	2
landscape	2
lattice	2
ligand	2
markov_random_field	2
mass_spectrometry	2
metadynamics	2
methods	2
mfpt	2
milestoning	2
modeling	2
modelling	2
molecular_mechanics	2
native	2
negative_design	2
noise_stability	2
nrps	2
optimization	2
path	2
phi	2
recognition	2
reference	2
replacement	2
secondary	2
simulated	2
solvation	2
solvent_effects	2
space	2
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tool	2
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value	2
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xray	2
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atomic	1
averaging	1
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binding_site	1
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cdc25	1
charges	1
chevron	1
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comment	1
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comparing_different_motion_models	1
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completeness	1
complex	1
component	1
configurational	1
conformational_sampling	1
constant	1
constraint_satisfaction	1
content	1
croem	1
cryo	1
crystallography	1
cyana	1
d-amino-acid	1
ddg	1
denovo	1
density	1
difference_map	1
dimensionality_reduction	1
dipolar	1
disordered	1
disordered_proteins	1
distance_measure	1
drug_design	1
drug_discovery	1
electron_microscopy	1
electrostatics	1
elnemo	1
em	1
empirical	1
empirical_scoring_function	1
energy_function	1
entropy_estimation	1
equation	1
essential_dynamics	1
evolution	1
example	1
exchange	1
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experiments	1
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finding	1
flexibiliy	1
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foldtraj	1
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function_prediction	1
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geometry	1
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go	1
graph_cuts	1
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graph_theory	1
hardware	1
hausdorff	1
hd_exchange_rate	1
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inverse_folding	1
kariyer	1
kinetic	1
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lambda	1
library	1
ligand_binding	1
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local	1
long	1
macromolecular	1
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maps	1
mars	1
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md	1
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mle	1
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molecular_design	1
motif	1
mr	1
multidomain	1
multipole	1
multiscale	1
non-holonomic	1
opensource	1
opinion	1
optimum	1
organization	1
paramagnetic_quenching	1
partial	1
pattern	1
pca	1
peptides	1
perspectives	1
placement	1
plot	1
pnas	1
pre	1
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protein_dna_binding	1
protein_stability	1
psi-value-analysis	1
redcat	1
refinement	1
refolding	1
replica	1
repressor	1
research	1
residue	1
ribosome	1
rna	1
robotics	1
rosetta	1
ruby	1
scattering	1
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screening	1
sequence	1
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sh3	1
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state	1
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study	1
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tensor	1
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time	1
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topology	1
ubiquitin	1
umbrella_sampling	1
waiting_time	1
water_hsqc	1
wavelets	1
wide-angle	1

apaydin's protein_structure_determination [43 articles] Export

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