apaydin's rdc [26 articles] Export

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	Protein backbone motions viewed by intraresidue and sequential HN-Halpha residual dipolar couplings. [My Copy] Journal of biomolecular NMR, Vol. 41, No. 1. (May 2008), pp. 17-28. by B. Vögeli, L. Yao, A. Bax posted to backbone motion nmr rdc by apaydin on 2009-04-19 14:11:22 as
	rdc's [My Copy] by Annila posted to rdc review by apaydin on 2008-05-12 16:35:50 as
	Measurement of bond vector orientations in invisible excited states of proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18473-18477. by Pramodh Vallurupalli, Flemming D. Hansen, Elliott Stollar, Eva Meirovitch, Lewis E. Kay posted to nmr rdc unfolded_state by apaydin on 2008-02-28 19:29:10 as
	Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target [My Copy] Journal of Structural and Functional Genomics, Vol. 5, No. 4. (25 January 2005), pp. 241-254. by H. Valafar, K. L. Mayer, C. M. Bougault, et al.P. D. Leblond, F. E. Jenney, P. S. Brereton, M. W. W. Adams, J. H. Prestegard posted to determination fragment structure based protein rdc backbone by apaydin on 2007-10-30 18:31:59 as
	Use of residual dipolar couplings as restraints in ab initio protein structure prediction. [My Copy] Biopolymers, Vol. 70, No. 4. (December 2003), pp. 548-562. by T. Haliloglu, A. Kolinski, J. Skolnick posted to lattice model prediction protein rdc structure by apaydin on 2007-10-30 18:08:24 as along with 1 person j3xucite
	De novo determination of protein backbone structure from residual dipolar couplings using Rosetta. [My Copy] J Am Chem Soc, Vol. 124, No. 11. (20 March 2002), pp. 2723-2729. by C. A. Rohl, D. Baker posted to denovo determination protein rdc rosetta structure by apaydin on 2007-10-30 18:02:03 as along with 1 person j3xucite
	Determination of protein backbone structures from residual dipolar couplings. [My Copy] Methods Enzymol, Vol. 394 (2005), pp. 175-209. by J. H. Prestegard, K. L. Mayer, H. Valafar, G. C. Benison posted to backbone determination protein rdc structure by apaydin on 2007-10-30 17:56:17 as
	REDCAT: a residual dipolar coupling analysis tool [My Copy] Journal of Magnetic Resonance, Vol. 167, No. 2. (April 2004), pp. 228-241. by Homayoun Valafar, James H. Prestegard posted to nmr rdc redcat tool visualization assignments by apaydin on 2007-10-30 17:51:59 as
	Amplitudes of protein backbone dynamics and correlated motions in a small alpha/beta protein: correspondence of dipolar coupling and heteronuclear relaxation measurements. [My Copy] Biochemistry, Vol. 43, No. 33. (24 August 2004), pp. 10678-10691. by G. M. Clore, C. D. Schwieters posted to dynamics nmr protein rdc by apaydin on 2007-06-08 14:33:00 as
	How much backbone motion in ubiquitin is required to account for dipolar coupling data measured in multiple alignment media as assessed by independent cross-validation? [My Copy] J Am Chem Soc, Vol. 126, No. 9. (10 March 2004), pp. 2923-2938. by G. M. Clore, C. D. Schwieters posted to backbone dynamics motion protein rdc by apaydin on 2007-06-08 14:31:56 as
	Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution. [My Copy] Proc Natl Acad Sci U S A, Vol. 92, No. 20. (26 September 1995), pp. 9279-9283. by J. R. Tolman, J. M. Flanagan, M. A. Kennedy, J. H. Prestegard posted to nmr rdc by apaydin on 2007-06-07 15:18:13 as
	Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium. [My Copy] Science, Vol. 278, No. 5340. (7 November 1997), pp. 1111-1114. by N. Tjandra, A. Bax posted to nmr rdc by apaydin on 2007-06-07 15:16:56 as along with 1 person bmduggan
	Protein backbone structure determination using only residual dipolar couplings from one ordering medium [My Copy] Journal of Biomolecular NMR, Vol. 21, No. 4. (1 December 2001), pp. 335-347. by Michael Andrec, Peicheng Du, Ronald M. Levy posted to determination nmr rdc structure by apaydin on 2007-04-09 23:47:20 as
	Single-step determination of protein substructures using dipolar couplings: aid to structural genomics. [My Copy] J Am Chem Soc, Vol. 123, No. 38. (26 September 2001), pp. 9490-9491. by M. Zweckstetter, A. Bax posted to structure rdc protein nmr dipolar determination couplings by apaydin on 2007-01-19 16:32:09 as
	Backbone assignment of proteins with known structure using residual dipolar couplings [My Copy] Journal of Biomolecular NMR, Vol. V30, No. 1. (2004), pp. 25-35. by Young-Sang Jung, Markus Zweckstetter posted to backbone homologous mars nmr rdc structure assignments by apaydin on 2006-12-12 19:07:53 as
	Modeling protein conformational ensembles: From missing loops to equilibrium fluctuations [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 1. (2006), pp. 164-179. by Amarda Shehu, Cecilia Clementi, Lydia E. Kavraki posted to flexibility geometric order parameter protein rdc thermodynamic by apaydin on 2006-11-15 22:11:22 as along with 6 people and 2 groups nigham aqeel yongzhao elham hmk sobolevnrm TSRI_MGL baker-group
	Determination of protein backbone structure using only residual dipolar couplings. [My Copy] J Am Chem Soc, Vol. 123, No. 7. (21 February 2001), pp. 1541-1542. by J. C. Hus, D. Marion, M. Blackledge posted to protein_structure_determination rdc by apaydin on 2006-02-14 21:19:51 as
	CLOUDS, a protocol for deriving a molecular proton density via NMR [My Copy] PNAS, Vol. 99, No. 10. (14 May 2002), pp. 6707-6712. by Alexander Grishaev, M. Llinás posted to molecular_replacement nmr noe noe_assignment protein_structure_determination rdc resonance_assignment unassigned_nmr_data by apaydin on 2006-02-13 14:49:21 as along with 1 person rph
	Characterization of molecular alignment in aqueous suspensions of Pf1 bacteriophage. [My Copy] J Biomol NMR, Vol. 20, No. 4. (August 2001), pp. 365-377. by M. Zweckstetter, A. Bax posted to nmr protein_structure_determination rdc unfolded_state by apaydin on 2006-02-13 13:41:12 as
	Baumketner05.pdf (application/pdf Object) [My Copy] posted to misfolding nmr protein_folding rdc unfolded_state by apaydin on 2006-02-12 21:56:05 as
	dipolar couplings [My Copy] by Blackledge posted to nmr rdc tutorial by apaydin on 2006-01-13 14:27:01 as
	A structural model for unfolded proteins from residual dipolar couplings and small-angle x-ray scattering. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 47. (22 November 2005), pp. 17002-17007. by P. Bernadó, L. Blanchard, P. Timmins, D. Marion, R. W. Ruigrok, M. Blackledge posted to nmr protein_folding rdc saxs unfolded_state by apaydin on 2005-12-24 04:18:14 as along with 1 person allmensch
	Defining Long-Range Order and Local Disorder in Native alpha-Synuclein Using Residual Dipolar Couplings. [My Copy] J Am Chem Soc, Vol. 127, No. 51. (28 December 2005), pp. 17968-17969. by Pau Bernadó, Carlos W. Bertoncini, Christian Griesinger, Markus Zweckstetter, Martin Blackledge posted to nmr protein_folding rdc unfolded_state by apaydin on 2005-12-24 04:17:11 as along with 1 person allmensch
	Model-free analysis of protein backbone motion from residual dipolar couplings. [My Copy] J Am Chem Soc, Vol. 124, No. 20. (22 May 2002), pp. 5822-5833. by W. Peti, J. Meiler, R. Brüschweiler, C. Griesinger posted to nmr protein_dynamics rdc by apaydin on 2005-11-10 14:18:37 as
	NMR Studies of Biomolecular Dynamics and Structural Plasticity Using Residual Dipolar Couplings [My Copy] Annual Reports on NMR Spectroscopy, Vol. Volume 51, pp. 105--166. by Tolman, Al-Hashimi posted to nmr protein_dynamics rdc review by apaydin on 2005-10-21 15:15:02 as
	Protein structure prediction using sparse dipolar coupling data. [My Copy] Nucleic Acids Res, Vol. 32, No. 2. (2004), pp. 551-561. by Y. Qu, J. T. Guo, V. Olman, Y. Xu posted to alignment database determination fold homology nmr protein rdc structure by apaydin on 2005-10-05 23:04:04 as

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nmr	188
protein	108
protein_dynamics	106
protein_folding	66
review	52
folding	51
protein_structure_determination	43
assignments	39
structure	39
protein_ligand_binding	34
protein_design	26
rdc	26
prediction	19
protein_protein_binding	18
resonance_assignment	18
tutorial	18
dynamics	16
normal_mode_analysis	15
allostery	14
chemical	14
rate_determination	14
unfolded_state	14
backbone	13
determination	13
phi_value_analysis	13
prm	13
model	12
pfold	12
ligand-protein-binding	11
nma	11
noe	11
misfolding	10
rate	10
shift	10
flexibility	9
molecular_dynamics	9
noe_assignment	9
protein_structure	9
sba	9
x-ray	9
design	8
docking	8
motion	8
sampling	8
voting	8
database	7
function	7
homology	7
molecular	7
probabilistic_roadmaps	7
rate_prediction	7
rotamer_libraries	7
algorithms	6
alignment	6
conformational	6
ensemble	6
go_model	6
planning	6
protein_protein_interactions	6
rotamer	6
srs	6
unassigned_nmr_data	6
based	5
binding	5
chemical_shift	5
enm	5
ensembles	5
markov_chains	5
monte_carlo	5
nvr	5
programming	5
relaxation	5
resonance	5
scoring	5
sidechain	5
side_chain_flexibility	5
structural	5
4d-noesy	4
analysis	4
coarse_grained	4
denatured	4
drug	4
entropy	4
hiv_integrase	4
hydrogen_exchange	4
inverse_kinematics	4
kinetics	4
learning	4
ligand_flexibility	4
network	4
shifts	4
webserver	4
aggregation	3
backbone_flexibility	3
collision	3
consensus	3
denatured_state	3
diffusion	3
elastic	3
energy	3
enzyme_redesign	3
fast	3
fold_determination	3
gnm	3
integer	3
intermediate	3
linear	3
loop	3
molecular_replacement	3
order	3
parameter	3
pathways	3
protein_structure_prediction	3
python	3
rigidity	3
saxs	3
search	3
simulations	3
teaching	3
torsional_angle	3
transition_state_ensemble	3
acbp	2
annealing	2
ant	2
approximation	2
bipartite_matching	2
cap	2
cheminformatics	2
closure	2
colony	2
comparison	2
contacts	2
corex	2
couplings	2
data	2
detection	2
diversity	2
efficient_energy_minimization	2
energy_landscape	2
equilibrium	2
finkelstein	2
fold	2
fragment	2
funnel	2
genetic	2
gpcr	2
hotspot	2
hp	2
hydrogen_bonds	2
incremental	2
index	2
inverse	2
kinematics	2
kstar	2
landscape	2
lattice	2
ligand	2
markov_random_field	2
mass_spectrometry	2
metadynamics	2
methods	2
mfpt	2
milestoning	2
modeling	2
modelling	2
molecular_mechanics	2
native	2
negative_design	2
noise_stability	2
nrps	2
optimization	2
path	2
phi	2
recognition	2
reference	2
replacement	2
secondary	2
simulated	2
solvation	2
solvent_effects	2
space	2
systems_biology	2
tool	2
transition	2
unfolded	2
value	2
visualization	2
xray	2
advice	1
anisotropic	1
anm	1
assembly	1
atomic	1
averaging	1
bayesian_methods	1
belief	1
benchmark	1
binding_site	1
bpti	1
branch_and_bound	1
calculation	1
c-alpha	1
cdc25	1
charges	1
chevron	1
classification	1
cloud_computing	1
comment	1
communication	1
comparing_different_motion_models	1
complete	1
completeness	1
complex	1
component	1
configurational	1
conformational_sampling	1
constant	1
constraint_satisfaction	1
content	1
croem	1
cryo	1
crystallography	1
cyana	1
d-amino-acid	1
ddg	1
denovo	1
density	1
difference_map	1
dimensionality_reduction	1
dipolar	1
disordered	1
disordered_proteins	1
distance_measure	1
drug_design	1
drug_discovery	1
electron_microscopy	1
electrostatics	1
elnemo	1
em	1
empirical	1
empirical_scoring_function	1
energy_function	1
entropy_estimation	1
equation	1
essential_dynamics	1
evolution	1
example	1
exchange	1
experimental	1
experiments	1
fft	1
finding	1
flexibiliy	1
foldamer	1
folder	1
foldtraj	1
free	1
froda	1
functional_classification	1
function_prediction	1
geometric	1
geometry	1
germany	1
go	1
graph_cuts	1
graph_representation	1
graph_theory	1
hardware	1
hausdorff	1
hd_exchange_rate	1
homologous	1
information	1
initiative	1
inverse_folding	1
kariyer	1
kinetic	1
kl_distance	1
lambda	1
library	1
ligand_binding	1
linguistics	1
local	1
long	1
macromolecular	1
manipulation_planning	1
maps	1
mars	1
master	1
md	1
membrane	1
meta	1
metaheuristics	1
mining	1
mirna	1
mle	1
modeller	1
molecular_design	1
motif	1
mr	1
multidomain	1
multipole	1
multiscale	1
non-holonomic	1
opensource	1
opinion	1
optimum	1
organization	1
paramagnetic_quenching	1
partial	1
pattern	1
pca	1
peptides	1
perspectives	1
placement	1
plot	1
pnas	1
pre	1
principal	1
propagation	1
protein_dna_binding	1
protein_stability	1
psi-value-analysis	1
redcat	1
refinement	1
refolding	1
replica	1
repressor	1
research	1
residue	1
ribosome	1
rna	1
robotics	1
rosetta	1
ruby	1
scattering	1
score	1
scoring_function	1
screening	1
sequence	1
sequential	1
sh3	1
simplified	1
software	1
state	1
stochasticity	1
structural_ensemble	1
study	1
supercomputer	1
supramolecular	1
svm	1
synthesis	1
tabu	1
task_planning	1
tensor	1
thermodynamic	1
thermodynamics	1
time	1
tools	1
topology	1
ubiquitin	1
umbrella_sampling	1
waiting_time	1
water_hsqc	1
wavelets	1
wide-angle	1

apaydin's rdc [26 articles] Export

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