apaydin's resonance_assignment [18 articles] Export

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	Probabilistic Interaction Network of Evidence Algorithm and its Application to Complete Labeling of Peak Lists from Protein NMR Spectroscopy [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000307. by Arash Bahrami, Amir H. Assadi, John L. Markley, Hamid R. Eghbalnia posted to nmr resonance_assignment by apaydin on 2009-03-31 13:34:09 as along with 1 person nuin
	Automated sequence-specific protein NMR assignment using the memetic algorithm MATCH. [My Copy] Journal of biomolecular NMR, Vol. 41, No. 3. (July 2008), pp. 127-138. by J. Volk, T. Herrmann, K. Wüthrich posted to nmr resonance_assignment by apaydin on 2009-03-31 13:31:37 as along with 1 person babakap
	Sequence specific resonance assignment via Multicanonical Monte Carlo search using an ABACUS approach [My Copy] Journal of Biomolecular NMR, Vol. 41, No. 1. (1 May 2008), pp. 29-41. by Alexander Lemak, Carlos Steren, Cheryl Arrowsmith, Miguel Llinás posted to nmr resonance_assignment by apaydin on 2009-03-31 13:29:43 as along with 1 person babakap
	Automated analysis of protein NMR assignments using methods from artificial intelligence [My Copy] Journal of Molecular Biology, Vol. 269, No. 4. (20 June 1997), pp. 592-610. by D. Zimmerman posted to assignments nmr resonance_assignment by apaydin on 2009-02-15 14:31:39 as along with 2 people kumar_physics lna
	Sequence-specific NMR assignment of proteins by global fragment mapping with the program Mapper [My Copy] Journal of Biomolecular NMR, Vol. 18, No. 2. (1 October 2000), pp. 129-137. by Peter Güntert, Michael Salzmann, Daniel Braun, Kurt Wüthrich posted to assignments nmr resonance_assignment by apaydin on 2009-02-15 14:30:13 as along with 1 person lna
	combining voters [My Copy] by Alpaydin posted to bipartite_matching learning nmr nvr resonance_assignment voting by apaydin on 2006-05-24 23:46:50 as
	Approximation algorithms for classification problems with pairwise relationships: metric labeling and Markov random fields [My Copy] J. ACM, Vol. 49, No. 5. (September 2002), pp. 616-639. by Jon Kleinberg, \ &\#201;va Tardos posted to markov_random_field nvr resonance_assignment by apaydin on 2006-04-27 17:12:08 as along with 1 person ansobol
	Heuristic search in constrained bipartite matching with applications to protein NMR backbone resonance assignment. [My Copy] J Bioinform Comput Biol, Vol. 3, No. 6. (December 2005), pp. 1331-1350. by G. Lin, T. Tegos, Z. Z. Chen posted to bipartite_matching nmr resonance_assignment by apaydin on 2006-03-29 16:22:39 as
	Histogram-based scoring schemes for protein NMR resonance assignment. [My Copy] J Bioinform Comput Biol, Vol. 2, No. 4. (December 2004), pp. 747-764. by X. Wan, T. Tegos, G. Lin posted to nmr resonance_assignment scoring by apaydin on 2006-03-28 21:16:28 as
	Reconsidering complete search algorithms for protein backbone NMR assignment. [My Copy] Bioinformatics, Vol. 21 Suppl 2 (1 September 2005) by O. Vitek, C. Bailey-Kellogg, B. Craig, P. Kuliniewicz, J. Vitek posted to nmr resonance_assignment by apaydin on 2006-03-22 23:06:02 as along with 1 person j3xucite
	supplemenrary info hd exchange rates for ubq [My Copy] by Prestegard posted to hydrogen_exchange nmr protein_structure_determination resonance_assignment by apaydin on 2006-02-13 19:58:10 as
	Protein structure elucidation from NMR proton densities [My Copy] PNAS, Vol. 99, No. 10. (14 May 2002), pp. 6713-6718. by Alexander Grishaev, M. Llinás posted to nmr noe_assignment protein_structure_determination resonance_assignment by apaydin on 2006-02-13 14:51:52 as
	CLOUDS, a protocol for deriving a molecular proton density via NMR [My Copy] PNAS, Vol. 99, No. 10. (14 May 2002), pp. 6707-6712. by Alexander Grishaev, M. Llinás posted to molecular_replacement nmr noe noe_assignment protein_structure_determination rdc resonance_assignment unassigned_nmr_data by apaydin on 2006-02-13 14:49:21 as along with 1 person rph
	paper-2005-RIBRA-An_Error-Tolerant_Algorithm_for_the_NMR_Backbone_Assignment_Problem.pdf (application/pdf Object) [My Copy] posted to nmr protein_structure_determination resonance_assignment by apaydin on 2006-02-07 21:25:11 as
	Mass spectrometry assisted assignment of NMR resonances in 15N labeled proteins. [My Copy] J Am Chem Soc, Vol. 126, No. 44. (10 November 2004), pp. 14377-14379. by L. Feng, R. Orlando, J. H. Prestegard posted to hydrogen_exchange mass_spectrometry nmr protein_structure_determination resonance_assignment unassigned_nmr_data by apaydin on 2006-02-02 16:16:22 as
	Automated assignment of backbone NMR peaks using constrained bipartite matching [My Copy] Computing in Science & Engineering [see also IEEE Computational Science and Engineering], Vol. 4, No. 1. (2002), pp. 50-62. by Ying Xu, Dong Xu, Dongsup Kai, V. Olman, J. Razumovskaya, Tao Jiang posted to nmr noe_assignment resonance_assignment by apaydin on 2006-01-20 18:34:53 as
	Fast Approximate Energy Minimization via Graph Cuts [My Copy] by Yuri Boykov, Olga Veksler, Ramin Zabih posted to graph_cuts nmr resonance_assignment by apaydin on 2006-01-19 16:20:36 as
	Mass spectrometry assisted assignment of NMR resonances in reductively (13)c-methylated proteins. [My Copy] J Am Chem Soc, Vol. 127, No. 50. (21 December 2005), pp. 17626-17627. by M. A. Macnaughtan, A. M. Kane, J. H. Prestegard posted to mass_spectrometry nmr resonance_assignment by apaydin on 2005-12-24 04:15:42 as

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nmr	188
protein	108
protein_dynamics	106
protein_folding	66
review	52
folding	51
protein_structure_determination	43
assignments	39
structure	39
protein_ligand_binding	34
protein_design	26
rdc	26
prediction	19
protein_protein_binding	18
resonance_assignment	18
tutorial	18
dynamics	16
normal_mode_analysis	15
allostery	14
chemical	14
rate_determination	14
unfolded_state	14
backbone	13
determination	13
phi_value_analysis	13
prm	13
model	12
pfold	12
ligand-protein-binding	11
nma	11
noe	11
misfolding	10
rate	10
shift	10
flexibility	9
molecular_dynamics	9
noe_assignment	9
protein_structure	9
sba	9
x-ray	9
design	8
docking	8
motion	8
sampling	8
voting	8
database	7
function	7
homology	7
molecular	7
probabilistic_roadmaps	7
rate_prediction	7
rotamer_libraries	7
algorithms	6
alignment	6
conformational	6
ensemble	6
go_model	6
planning	6
protein_protein_interactions	6
rotamer	6
srs	6
unassigned_nmr_data	6
based	5
binding	5
chemical_shift	5
enm	5
ensembles	5
markov_chains	5
monte_carlo	5
nvr	5
programming	5
relaxation	5
resonance	5
scoring	5
sidechain	5
side_chain_flexibility	5
structural	5
4d-noesy	4
analysis	4
coarse_grained	4
denatured	4
drug	4
entropy	4
hiv_integrase	4
hydrogen_exchange	4
inverse_kinematics	4
kinetics	4
learning	4
ligand_flexibility	4
network	4
shifts	4
webserver	4
aggregation	3
backbone_flexibility	3
collision	3
consensus	3
denatured_state	3
diffusion	3
elastic	3
energy	3
enzyme_redesign	3
fast	3
fold_determination	3
gnm	3
integer	3
intermediate	3
linear	3
loop	3
molecular_replacement	3
order	3
parameter	3
pathways	3
protein_structure_prediction	3
python	3
rigidity	3
saxs	3
search	3
simulations	3
teaching	3
torsional_angle	3
transition_state_ensemble	3
acbp	2
annealing	2
ant	2
approximation	2
bipartite_matching	2
cap	2
cheminformatics	2
closure	2
colony	2
comparison	2
contacts	2
corex	2
couplings	2
data	2
detection	2
diversity	2
efficient_energy_minimization	2
energy_landscape	2
equilibrium	2
finkelstein	2
fold	2
fragment	2
funnel	2
genetic	2
gpcr	2
hotspot	2
hp	2
hydrogen_bonds	2
incremental	2
index	2
inverse	2
kinematics	2
kstar	2
landscape	2
lattice	2
ligand	2
markov_random_field	2
mass_spectrometry	2
metadynamics	2
methods	2
mfpt	2
milestoning	2
modeling	2
modelling	2
molecular_mechanics	2
native	2
negative_design	2
noise_stability	2
nrps	2
optimization	2
path	2
phi	2
recognition	2
reference	2
replacement	2
secondary	2
simulated	2
solvation	2
solvent_effects	2
space	2
systems_biology	2
tool	2
transition	2
unfolded	2
value	2
visualization	2
xray	2
advice	1
anisotropic	1
anm	1
assembly	1
atomic	1
averaging	1
bayesian_methods	1
belief	1
benchmark	1
binding_site	1
bpti	1
branch_and_bound	1
calculation	1
c-alpha	1
cdc25	1
charges	1
chevron	1
classification	1
cloud_computing	1
comment	1
communication	1
comparing_different_motion_models	1
complete	1
completeness	1
complex	1
component	1
configurational	1
conformational_sampling	1
constant	1
constraint_satisfaction	1
content	1
croem	1
cryo	1
crystallography	1
cyana	1
d-amino-acid	1
ddg	1
denovo	1
density	1
difference_map	1
dimensionality_reduction	1
dipolar	1
disordered	1
disordered_proteins	1
distance_measure	1
drug_design	1
drug_discovery	1
electron_microscopy	1
electrostatics	1
elnemo	1
em	1
empirical	1
empirical_scoring_function	1
energy_function	1
entropy_estimation	1
equation	1
essential_dynamics	1
evolution	1
example	1
exchange	1
experimental	1
experiments	1
fft	1
finding	1
flexibiliy	1
foldamer	1
folder	1
foldtraj	1
free	1
froda	1
functional_classification	1
function_prediction	1
geometric	1
geometry	1
germany	1
go	1
graph_cuts	1
graph_representation	1
graph_theory	1
hardware	1
hausdorff	1
hd_exchange_rate	1
homologous	1
information	1
initiative	1
inverse_folding	1
kariyer	1
kinetic	1
kl_distance	1
lambda	1
library	1
ligand_binding	1
linguistics	1
local	1
long	1
macromolecular	1
manipulation_planning	1
maps	1
mars	1
master	1
md	1
membrane	1
meta	1
metaheuristics	1
mining	1
mirna	1
mle	1
modeller	1
molecular_design	1
motif	1
mr	1
multidomain	1
multipole	1
multiscale	1
non-holonomic	1
opensource	1
opinion	1
optimum	1
organization	1
paramagnetic_quenching	1
partial	1
pattern	1
pca	1
peptides	1
perspectives	1
placement	1
plot	1
pnas	1
pre	1
principal	1
propagation	1
protein_dna_binding	1
protein_stability	1
psi-value-analysis	1
redcat	1
refinement	1
refolding	1
replica	1
repressor	1
research	1
residue	1
ribosome	1
rna	1
robotics	1
rosetta	1
ruby	1
scattering	1
score	1
scoring_function	1
screening	1
sequence	1
sequential	1
sh3	1
simplified	1
software	1
state	1
stochasticity	1
structural_ensemble	1
study	1
supercomputer	1
supramolecular	1
svm	1
synthesis	1
tabu	1
task_planning	1
tensor	1
thermodynamic	1
thermodynamics	1
time	1
tools	1
topology	1
ubiquitin	1
umbrella_sampling	1
waiting_time	1
water_hsqc	1
wavelets	1
wide-angle	1

apaydin's resonance_assignment [18 articles] Export

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