apaydin's review [52 articles] Export

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	Lost in translation: an assessment and perspective for computational microRNA target identification [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3049-3055. by Panagiotis Alexiou, Manolis Maragkakis, Giorgos L. Papadopoulos, Martin Reczko, Artemis G. Hatzigeorgiou posted to review mirna by apaydin on 2009-11-23 20:43:23 as along with 15 people and 2 groups hyojinkang Stew guhjy pattersonee Jporci heliopais kintoki dswan dandaman kshameer lwaldron toni_marco frohike lp2 daforerog Bioinformatics - CRUK Journal picks
	Perspectives on NMR in drug discovery: a technique comes of age [My Copy] Nature Reviews Drug Discovery, Vol. 7, No. 9. (01 September 2008), pp. 738-745. by Maurizio Pellecchia, Ivano Bertini, David Cowburn, et al.Claudio Dalvit, Ernest Giralt, Wolfgang Jahnke, Thomas L. James, Steve W. Homans, Horst Kessler, Claudio Luchinat, Bernd Meyer, Hartmut Oschkinat, Jeff Peng, Harald Schwalbe, Gregg Siegal posted to review nmr drug_discovery by apaydin on 2009-10-03 19:11:09 as along with 1 person ubcg08l
	Recent advances in computer-aided drug design [My Copy] Brief Bioinform, Vol. 10, No. 5. (1 September 2009), pp. 579-591. by Chun M. Song, Shen J. Lim, Joo C. Tong posted to review drug_design by apaydin on 2009-08-17 11:39:28 as along with 7 people and 1 group mtruksa npt11tpn abhishek_tiwari reyez operon kshameer phoenixzxl structural_bioinformatics
	Nature of the protein universe [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 27. (7 July 2009), pp. 11079-11084. by Michael Levitt posted to protein review by apaydin on 2009-07-04 08:45:08 as along with 9 people and 1 group martainn pmung ldiambra VGreiff carlosjavierna philcarter TRHvidsten paulschlesinger renatomilani Orengo Group Journal Picks
	Long-timescale molecular dynamics simulations of protein structure and function. [My Copy] Current opinion in structural biology, Vol. 19, No. 2. (08 April 2009), pp. 120-127. by John L. Klepeis, Kresten Lindorff-Larsen, Ron O. Dror, David E. Shaw posted to molecular_dynamics review by apaydin on 2009-06-15 09:28:10 as along with 11 people and 1 group xdeupi agrossfield allmensch bmduggan r2s2 kiekyon Borelli idoerg sobolevnrm edws paulschlesinger baker-group
	Book Reviews : Robot Motion Planning: by Jean-Claude Latombe published by Kluwer Academic Publishers -- Cameron 11 (4): 397 -- The International Journal of Robotics Research [My Copy] posted to motion planning review by apaydin on 2009-06-08 09:33:33 as
	Progress and challenges in predicting protein-protein interaction sites [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 233-246. by Iakes Ezkurdia, Lisa Bartoli, Piero Fariselli, Rita Casadio, Alfonso Valencia, Michael L. Tress posted to protein_protein_interactions review by apaydin on 2009-06-07 06:49:22 as along with 9 people and 1 group flbarroso biomcgary nanonan marti neils reyez barry renatomilani iakes McCammon
	Recent advances in computer-aided drug design. [My Copy] Briefings in bioinformatics (11 May 2009) by Chun Meng M. Song, Shen Jean J. Lim, Joo Chuan C. Tong posted to design drug review by apaydin on 2009-05-19 09:55:27 as along with 3 people and 2 groups klexa nanonan barry structural_bioinformatics McCammon
	Automated structure determination from NMR spectra [My Copy] European Biophysics Journal, Vol. 38, No. 2. (1 February 2009), pp. 129-143. by Peter Güntert posted to nmr review by apaydin on 2009-03-31 13:36:52 as along with 3 people dgront lna bmduggan
	Chemical shifts as a tool for structure determination. [My Copy] Methods Enzymol, Vol. 239 (1994), pp. 363-392. by D. S. Wishart, B. D. Sykes posted to chemical review shift by apaydin on 2009-03-13 10:24:21 as along with 1 person fjc1
	A survey of available tools and web servers for analysis of protein-protein interactions and interfaces [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 217-232. by Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gursoy, Ruth Nussinov posted to protein_protein_interactions review webserver by apaydin on 2009-03-06 19:32:28 as along with 12 people and 3 groups dfdong jinghu_fandm daforerog qluo SaraNasser mikaellund reyez diamantis barry semin renatomilani svozil structural_bioinformatics McCammon Bioinformatics
	Automated analysis of protein NMR assignments and structures. [My Copy] Chemical reviews, Vol. 104, No. 8. (August 2004), pp. 3541-3556. by M. C. Baran, Y. J. Huang, H. N. Moseley, G. T. Montelione posted to assignments nmr review by apaydin on 2009-02-03 09:59:31 as along with 2 people kumar_physics lna
	Protein-Based Virtual Screening of Chemical Databases. 1. Evaluation of Different Docking/Scoring Combinations [My Copy] Journal of Medicinal Chemistry, Vol. 43, No. 25. (1 December 2000), pp. 4759-4767. by Caterina Bissantz, Gerd Folkers, Didier Rognan posted to docking review by apaydin on 2009-01-25 16:23:25 as
	rdc's [My Copy] by Annila posted to rdc review by apaydin on 2008-05-12 16:35:50 as
	Searching for new allosteric sites in enzymes. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 6. (December 2004), pp. 706-715. by J. A. Hardy, J. A. Wells posted to allostery review by apaydin on 2008-01-21 02:31:24 as along with 5 people barry mdimmic lna aqeel higueruelo
	Recent Advances in Chemoinformatics [My Copy] posted to cheminformatics review by apaydin on 2007-10-05 21:58:54 as
	Conformational Sampling of Bioactive Molecules: A Comparative Study [My Copy] J. Chem. Inf. Model. (6 April 2007) by D. K. Agrafiotis, A. C. Gibbs, F. Zhu, S. Izrailev, E. Martin posted to conformational review sampling by apaydin on 2007-10-05 21:58:15 as along with 3 people massivemayhem daevans superpyrin
	Automated analysis of NMR assignments and structures for proteins [My Copy] Current Opinion in Structural Biology, Vol. 9, No. 5. (1 October 1999), pp. 635-642. by Hunter N. B. Moseley, Gaetano T. Montelione posted to assignments determination nmr protein review structure by apaydin on 2007-09-07 16:31:57 as along with 1 person kumar_physics
	Quantitative Analysis of Biomolecular NMR Spectra: A Prerequisite for the Determination of the Structure and Dynamics of Biomolecules [My Copy] Current Organic Chemistry, Vol. 10, No. 5. (March 2006), pp. 555-568. by Therese E. Malliavin posted to dynamics nmr review structure by apaydin on 2007-06-19 17:01:53 as
	NMR spectroscopy: a multifaceted approach to macromolecular structure. [My Copy] Q Rev Biophys, Vol. 33, No. 1. (February 2000), pp. 29-65. by A. E. Ferentz, G. Wagner posted to nmr review by apaydin on 2007-06-07 17:52:59 as along with 1 person perrywoo
	Molecular dynamics and protein function. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 19. (10 May 2005), pp. 6679-6685. by M. Karplus, J. Kuriyan posted to molecular_dynamics review by apaydin on 2007-06-05 14:46:38 as along with 5 people flbarroso onufriev bilab allmensch RamuAnandakrishnan
	NMR studies of protein structure and dynamics [My Copy] Journal of Magnetic Resonance, Vol. 173, No. 2. (April 2005), pp. 193-207. by Lewis E. Kay posted to dynamics nmr protein review structure by apaydin on 2007-06-05 14:40:28 as
	New Tools Provide New Insights in NMR Studies of Protein Dynamics [My Copy] Science, Vol. 312, No. 5771. (14 April 2006), pp. 224-228. by Anthony Mittermaier, Lewis E. Kay posted to dynamics nmr review by apaydin on 2007-02-15 23:01:31 as along with 5 people xdeupi bmduggan lna aqeel laurabailey
	NMR chemical shift imaging. [My Copy] Comput Med Imaging Graph, Vol. 13, No. 1. (b 1989), pp. 93-104. by H. F. Brink, M. D. Buschmann, B. R. Rosen posted to nmr review by apaydin on 2006-07-27 15:07:52 as
	Mechanism of fast protein folding. [My Copy] Annu Rev Biochem, Vol. 71 (2002), pp. 783-815. by J. K. Myers, T. G. Oas posted to collision diffusion experiments folding model protein rate review by apaydin on 2006-05-09 22:26:15 as
	TRANSITION PATH SAMPLING: Throwing Ropes Over Rough Mountain Passes, in the Dark - Annual Review of Physical Chemistry, 53(1):291 - Abstract [My Copy] by Dellago, Bolhuis posted to rate_determination review by apaydin on 2006-04-12 13:32:13 as
	Receptor-based prediction of binding affinities [My Copy] by Tudor I. Oprea, Garland R. Marshall posted to binding review scoring_function by apaydin on 2006-03-08 20:58:55 as
	NMR studies of protein interactions [My Copy] by Koh Takeuchi, Gerhard Wagner posted to nmr protein_protein_binding review by apaydin on 2006-02-14 20:18:12 as
	Nature Insight - protein misfolding [My Copy] posted to misfolding protein_folding review by apaydin on 2006-01-17 13:02:44 as along with 1 person jassie17
	Coarse-grained normal mode analysis in structural biology [My Copy] Current Opinion in Structural Biology, Vol. 15, No. 5. (October 2005), pp. 586-592. by Ivet Bahar, Aj Rader posted to coarse_grained normal_mode_analysis review by apaydin on 2006-01-09 14:34:48 as along with 7 people and 2 groups BragilMassoud barry aqeel shuns scis0000001 insectopalo higueruelo structural_bioinformatics Bioinformatics
	Characterizing transition states in protein folding: an essential step in the puzzle [My Copy] Current Opinion in Structural Biology, Vol. 5, No. 1. (February 1995), pp. 79-84. by Alan R. Fersht posted to phi_value_analysis protein_folding rate_determination review by apaydin on 2006-01-07 13:32:02 as
	The family feud: do proteins with similar structures fold via the same pathway? [My Copy] Curr Opin Struct Biol, Vol. 15, No. 1. (February 2005), pp. 42-49. by A. Zarrine-Afsar, S. M. Larson, A. R. Davidson posted to phi_value_analysis protein_folding review by apaydin on 2005-12-22 19:29:43 as along with 1 person gbart
	Accommodating protein flexibility in computational drug design. [My Copy] Mol Pharmacol, Vol. 57, No. 2. (February 2000), pp. 213-218. by H. A. Carlson, J. A. McCammon posted to tutorial protein_dynamics review by apaydin on 2005-12-07 15:52:23 as along with 4 people karinaecomp lna aqeel blackbart
	Protein structures from NMR. [My Copy] Biochemistry, Vol. 27, No. 15. (26 July 1988), pp. 5389-5395. by R. Kaptein, R. Boelens, R. M. Scheek, W. F. van Gunsteren posted to nmr protein_structure_determination review tutorial by apaydin on 2005-11-29 17:24:06 as
	Predicting binding energetics from structure: looking beyond DeltaG degrees. [My Copy] Med Res Rev, Vol. 19, No. 4. (July 1999), pp. 333-339. by K. P. Murphy posted to protein_design protein_ligand_binding protein_protein_binding review tutorial by apaydin on 2005-11-15 18:45:07 as along with 1 person dario
	Protein dynamics from NMR [My Copy] Nat Struct Mol Biol, Vol. 5 Suppl (01 July 1998), pp. 513-517. by Lewis E. Kay posted to nmr protein_dynamics review tutorial by apaydin on 2005-11-09 16:41:55 as along with 2 people bmduggan ruvido
	Protein dynamics from NMR. [My Copy] Biochem Cell Biol, Vol. 76, No. 2-3. (1998), pp. 145-152. by L. E. Kay posted to nmr protein_dynamics review tutorial by apaydin on 2005-11-09 16:40:46 as
	Measurements of binding thermodynamics in drug discovery. [My Copy] Drug Discov Today, Vol. 10, No. 22. (15 November 2005), pp. 1543-1550. by G. A. Holdgate, W. H. Ward posted to protein_dynamics review by apaydin on 2005-11-07 14:50:38 as
	NMR Studies of Biomolecular Dynamics and Structural Plasticity Using Residual Dipolar Couplings [My Copy] Annual Reports on NMR Spectroscopy, Vol. Volume 51, pp. 105--166. by Tolman, Al-Hashimi posted to nmr protein_dynamics rdc review by apaydin on 2005-10-21 15:15:02 as
	Automation of NMR structure determination of proteins [My Copy] Current Opinion in Structural Biology, Vol. 14, No. 5. (October 2004), pp. 547-553. by A. Altieri, R. Byrd posted to nmr protein_structure_determination review by apaydin on 2005-09-24 20:13:20 as along with 3 people siggi84 kumar_physics xdeupi
	Lead discovery using molecular docking. [My Copy] Curr Opin Chem Biol, Vol. 6, No. 4. (August 2002), pp. 439-446. by B. K. Shoichet, S. L. McGovern, B. Wei, J. J. Irwin posted to protein_ligand_binding review tutorial by apaydin on 2005-09-13 21:15:54 as along with 4 people and 2 groups flbarroso marcius blackbart massivemayhem BioinfoCIPF SGU-CIPF
	Protein flexibility and drug design: how to hit a moving target. [My Copy] Curr Opin Chem Biol, Vol. 6, No. 4. (August 2002), pp. 447-452. by H. A. Carlson posted to protein_dynamics protein_ligand_binding review tutorial by apaydin on 2005-08-19 16:31:07 as along with 3 people aqeel peprovy blackbart
	Principles of docking: An overview of search algorithms and a guide to scoring functions. [My Copy] Proteins, Vol. 47, No. 4. (1 June 2002), pp. 409-443. by Inbal Halperin, Buyong Ma, Haim Wolfson, Ruth Nussinov posted to docking protein_ligand_binding protein_protein_binding review by apaydin on 2005-08-19 16:16:56 as along with 25 people and 4 groups rabio ucbcjbm flbarroso csrocha oteri timg dgruiz cantupaz bicko chad_davis yongzhao ttjoseph nickolay ima sangeetha dgront blackbart gane5h mmuecke kazemi bpagano massivemayhem cjeans Evangelia nigham Structural Biology Group TorVergata Bioinformatics TSRI_MGL insilicodrug
	Conformational changes associated with protein-protein interactions [My Copy] Current Opinion in Structural Biology, Vol. 14, No. 1. (February 2004), pp. 104-109. by Chern-Sing Goh, Duncan Milburn, Mark Gerstein posted to protein_dynamics protein_protein_binding review by apaydin on 2005-08-16 17:12:34 as along with 5 people flbarroso LamBras boris_aguilar bicko nigham
	IMPLICATIONS OF PROTEIN FLEXIBILITY FOR DRUG DISCOVERY [My Copy] Nature Reviews Drug Discovery, Vol. 2 (2003), pp. 527-541. by Simon J. Teague posted to protein_dynamics protein_ligand_binding review by apaydin on 2005-08-11 21:33:00 as
	Voronoi and Voronoi-related tessellations in studies of protein structure and interaction [My Copy] Current Opinion in Structural Biology, Vol. 14, No. 2. (April 2004), pp. 233-241. by Anne Poupon posted to protein_dynamics review by apaydin on 2005-08-10 15:59:46 as along with 4 people choonpeng aengisch mirzazadeh siebertm
	Wavelets in bioinformatics and computational biology: state of art and perspectives [My Copy] Bioinformatics, Vol. 19 by Liò posted to review wavelets by apaydin on 2005-08-05 18:34:47 as
	PROTEIN FLEXIBILITY AND COMPUTER-AIDED DRUG DESIGN - [My Copy] Annual Review of Pharmacology and Toxicology,, Vol. 43 by Wong Cf, Mccammon posted to protein_dynamics protein_ligand_binding review by apaydin on 2005-08-05 17:36:06 as
	Probing protein dynamics using temperature jump relaxation spectroscopy [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 5. (01 October 2002), pp. 628-633. by R. Callender posted to protein_dynamics review by apaydin on 2005-08-04 16:24:26 as along with 1 person kjell
	Accommodating Protein Flexibility in Computational Drug Design -- Carlson and McCammon 57 (2): 213 -- Molecular Pharmacology [My Copy] posted to protein_design protein_dynamics review by apaydin on 2005-08-02 16:00:00 as

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apaydin's review [52 articles] Export

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