apaydin's structure [39 articles] Export

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	Nothing about protein structure classification makes sense except in the light of evolution [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (24 June 2009), pp. 329-334. by Ruben E. Valas, Song Yang, Philip E. Bourne posted to classification evolution protein structure by apaydin on 2009-05-12 08:50:42 as along with 13 people and 3 groups dfdong mkotlyar skywalkerus02 dgront nyyu robfsouza barry coela Zephyrus sobolevnrm zwang friendpine paulschlesinger structural_bioinformatics R.E.A.D baker-group
	Finding the Consensus Shape for a Protein Family [My Copy] Algorithmica, Vol. 38, No. 1. (1 October 2003), pp. 115-129. by Paul L. Chew, Klara Kedem posted to consensus protein structure by apaydin on 2009-05-10 17:52:16 as
	Protein conformational flexibility prediction using machine learning. [My Copy] Journal of magnetic resonance (San Diego, Calif. : 1997), Vol. 192, No. 1. (May 2008), pp. 37-47. by O. Trott, K. Siggers, B. Rost, A. G. Palmer posted to nmr order parameter prediction structure by apaydin on 2009-05-03 07:04:57 as
	Fast procedure for reconstruction of full-atom protein models from reduced representations. [My Copy] Journal of computational chemistry, Vol. 29, No. 9. (15 July 2008), pp. 1460-1465. by Piotr Rotkiewicz, Jeffrey Skolnick posted to consensus protein structure by apaydin on 2009-04-26 14:57:43 as along with 5 people Gabriel439 sebk rsantana mijam middledomain
	improving consensus structure [My Copy] by Dukka posted to consensus protein structure by apaydin on 2009-04-26 14:53:36 as
	Outcome of a workshop on applications of protein models in biomedical research. [My Copy] Structure (London, England : 1993), Vol. 17, No. 2. (13 February 2009), pp. 151-159. by T. Schwede, A. Sali, B. Honig, et al.M. Levitt, H. M. Berman, D. Jones, S. E. Brenner, S. K. Burley, R. Das, N. V. Dokholyan, R. L. Dunbrack, K. Fidelis, A. Fiser, A. Godzik, Y. J. Huang, C. Humblet, M. P. Jacobson, A. Joachimiak, S. R. Krystek, T. Kortemme, A. Kryshtafovych, G. T. Montelione, J. Moult, D. Murray, R. Sanchez, T. R. Sosnick, D. M. Standley, T. Stouch, S. Vajda, M. Vasquez, J. D. Westbrook, I. A. Wilson posted to modeling protein structure by apaydin on 2009-03-01 08:10:32 as
	An idea whose time has gone [My Copy] Genome Biology, Vol. 8 (02 July 2007), 107. by Gregory A. Petsko posted to initiative opinion protein structure by apaydin on 2009-02-19 09:39:58 as along with 2 people dullhunk rph
	Accurate and automated classification of protein secondary structure with PsiCSI. [My Copy] Protein science : a publication of the Protein Society, Vol. 12, No. 2. (February 2003), pp. 288-295. by L. H. Hung, R. Samudrala posted to chemical index nmr secondary shift structure by apaydin on 2009-02-08 08:03:19 as
	Waltzing α-helices [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1299-1300. by Victor Muñoz, Ravishankar Ramanathan posted to protein structure by apaydin on 2009-02-04 15:11:52 as along with 1 person amishp
	Stereospecific assignments of protein NMR resonances based on the tertiary structure and 2D/3D NOE data [My Copy] Journal of Computational Chemistry, Vol. 27, No. 6. (2006), pp. 791-797. by Primo&zcaron; Pristovscaronek, Lorella Franzoni posted to assignments based nmr structure by apaydin on 2009-02-03 09:14:39 as
	Fast structure-based assignment of 15N HSQC spectra of selectively 15N-labeled paramagnetic proteins. [My Copy] Journal of the American Chemical Society, Vol. 126, No. 9. (10 March 2004), pp. 2963-2970. by G. Pintacuda, M. A. Keniry, T. Huber, A. Y. Park, N. E. Dixon, G. Otting posted to assignments based nmr structure by apaydin on 2009-02-03 09:12:38 as
	Can Morphing Methods Predict Intermediate Structures? [My Copy] Journal of molecular biology (30 October 2008) by Dahlia R R. Weiss, Michael Levitt posted to intermediate prediction protein_folding structure by apaydin on 2009-01-05 08:33:09 as along with 1 person and 2 groups barry structural_bioinformatics McCammon
	Integrated search and alignment of protein structures [My Copy] Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2872-2879. by Ahmet Sacan, Hakki I. Toroslu, Hakan Ferhatosmanoglu posted to alignment protein structure by apaydin on 2008-12-26 07:18:21 as along with 3 people mhamada gulkur reyez
	Hierarchical folding mechanism of apomyoglobin revealed by ultra-fast H/D exchange coupled with 2D NMR [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 37. (2008), pp. 13859-13864. by Takanori Uzawa, Chiaki Nishimura, Shuji Akiyama, et al.Koichiro Ishimori, Satoshi Takahashi, Jane H. Dyson, Peter E. Wright posted to hydrogen_exchange intermediate protein_folding structure by apaydin on 2008-10-31 09:12:02 as
	Consistent blind protein structure generation from NMR chemical shift data [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4685-4690. by Yang Shen, Oliver Lange, Frank Delaglio, et al.Paolo Rossi, James M. Aramini, Gaohua Liu, Alexander Eletsky, Yibing Wu, Kiran K. Singarapu, Alexander Lemak, Alexandr Ignatchenko, Cheryl H. Arrowsmith, Thomas Szyperski, Gaetano T. Montelione, David Baker, Ad Bax posted to chemical nmr prediction protein shifts structure by apaydin on 2008-07-05 20:30:20 as along with 7 people and 1 group siggi84 babakap dgront zwang biehl sunhwan skoddet Nielsen group
	A generative, probabilistic model of local protein structure [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 26. (1 July 2008), pp. 8932-8937. by Wouter Boomsma, Kanti V. Mardia, Charles C. Taylor, Jesper Ferkinghoff-Borg, Anders Krogh, Thomas Hamelryck posted to prediction protein structure by apaydin on 2008-07-02 17:55:01 as along with 5 people j3xucite bertelsen biehl zwang mijam
	Prediction of Aggregation-Prone Regions in Structured Proteins [My Copy] Journal of Molecular Biology, Vol. 380, No. 2. (04 July 2008), pp. 425-436. by Gian G. Tartaglia, Amol P. Pawar, Silvia Campioni, Christopher M. Dobson, Fabrizio Chiti, Michele Vendruscolo posted to aggregation prediction protein structure by apaydin on 2008-05-14 15:18:38 as
	High-resolution structure prediction and the crystallographic phase problem [My Copy] Nature, Vol. 450, No. 7167. (14 October 2007), pp. 259-264. by Bin Qian, Srivatsan Raman, Rhiju Das, et al.Philip Bradley, Airlie J. McCoy, Randy J. Read, David Baker posted to molecular prediction protein replacement structure by apaydin on 2008-02-18 00:04:34 as along with 16 people and 2 groups bmduggan newton1234 aheilbut jwm eckart_bindewald ffranca dgront massivemayhem cjeans zwang cactus sobolevnrm boris_aguilar Ema chenway ardalby baker-group OPIG
	Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target [My Copy] Journal of Structural and Functional Genomics, Vol. 5, No. 4. (25 January 2005), pp. 241-254. by H. Valafar, K. L. Mayer, C. M. Bougault, et al.P. D. Leblond, F. E. Jenney, P. S. Brereton, M. W. W. Adams, J. H. Prestegard posted to determination fragment structure based protein rdc backbone by apaydin on 2007-10-30 18:31:59 as
	Use of residual dipolar couplings as restraints in ab initio protein structure prediction. [My Copy] Biopolymers, Vol. 70, No. 4. (December 2003), pp. 548-562. by T. Haliloglu, A. Kolinski, J. Skolnick posted to lattice model prediction protein rdc structure by apaydin on 2007-10-30 18:08:24 as along with 1 person j3xucite
	De novo determination of protein backbone structure from residual dipolar couplings using Rosetta. [My Copy] J Am Chem Soc, Vol. 124, No. 11. (20 March 2002), pp. 2723-2729. by C. A. Rohl, D. Baker posted to denovo determination protein rdc rosetta structure by apaydin on 2007-10-30 18:02:03 as along with 1 person j3xucite
	Determination of protein backbone structures from residual dipolar couplings. [My Copy] Methods Enzymol, Vol. 394 (2005), pp. 175-209. by J. H. Prestegard, K. L. Mayer, H. Valafar, G. C. Benison posted to backbone determination protein rdc structure by apaydin on 2007-10-30 17:56:17 as
	Automated NMR structure calculation with CYANA. [My Copy] Methods Mol Biol, Vol. 278 (2004), pp. 353-378. by P. Güntert posted to cyana determination nmr noe protein protein_structure_determination structure by apaydin on 2007-09-17 16:14:40 as along with 1 person babakap
	Automated analysis of NMR assignments and structures for proteins [My Copy] Current Opinion in Structural Biology, Vol. 9, No. 5. (1 October 1999), pp. 635-642. by Hunter N. B. Moseley, Gaetano T. Montelione posted to assignments determination nmr protein review structure by apaydin on 2007-09-07 16:31:57 as along with 1 person kumar_physics
	Quantitative Analysis of Biomolecular NMR Spectra: A Prerequisite for the Determination of the Structure and Dynamics of Biomolecules [My Copy] Current Organic Chemistry, Vol. 10, No. 5. (March 2006), pp. 555-568. by Therese E. Malliavin posted to dynamics nmr review structure by apaydin on 2007-06-19 17:01:53 as
	A methodology for efficiently sampling the conformation space of molecular structures. [My Copy] Phys Biol, Vol. 2, No. 4. (November 2005) by A. Lee, I. Streinu, O. Brock posted to closure loop protein robotics structure by apaydin on 2007-06-05 14:53:14 as along with 1 person aqeel
	NMR studies of protein structure and dynamics [My Copy] Journal of Magnetic Resonance, Vol. 173, No. 2. (April 2005), pp. 193-207. by Lewis E. Kay posted to dynamics nmr protein review structure by apaydin on 2007-06-05 14:40:28 as
	Direct use of unassigned resonances in NMR structure calculations with proxy residues. [My Copy] J Am Chem Soc, Vol. 128, No. 23. (14 June 2006), pp. 7566-7571. by E. AB, D. J. Pugh, R. Kaptein, R. Boelens, A. M. Bonvin posted to calculation nmr prediction protein structure by apaydin on 2007-06-02 16:38:50 as
	Protein backbone structure determination using only residual dipolar couplings from one ordering medium [My Copy] Journal of Biomolecular NMR, Vol. 21, No. 4. (1 December 2001), pp. 335-347. by Michael Andrec, Peicheng Du, Ronald M. Levy posted to determination nmr rdc structure by apaydin on 2007-04-09 23:47:20 as
	A general method for the unbiased improvement of solution NMR structures by the use of related X-Ray data, the AUREMOL-ISIC algorithm [My Copy] BMC Structural Biology, Vol. 6 (26 June 2006), 14. by Konrad Brunner, Wolfram Gronwald, Jochen M. Trenner, Klaus-Peter Neidig, Hans R. Kalbitzer posted to determination nmr nvr protein structure by apaydin on 2007-03-27 16:00:29 as
	The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy. [My Copy] Biochemistry, Vol. 31, No. 6. (18 February 1992), pp. 1647-1651. by D. S. Wishart, B. D. Sykes, F. M. Richards posted to chemical nmr prediction secondary shift structure by apaydin on 2007-03-06 15:50:15 as along with 1 person laurabailey
	RefDB: A database of uniformly referenced protein chemical shifts [My Copy] Journal of Biomolecular NMR, Vol. V25, No. 3. (1 March 2003), pp. 173-195. by Haiyan Zhang, Stephen Neal, David S. Wishart posted to chemical database determination nmr protein shifts structure assignments by apaydin on 2007-03-06 15:38:14 as
	Assignment strategy for proteins with known structure. [My Copy] J Magn Reson, Vol. 157, No. 1. (July 2002), pp. 119-123. by J. C. Hus, J. J. Prompers, R. Brüschweiler posted to structure nmr based assignments by apaydin on 2007-01-29 21:14:42 as
	Molecular Replacement [My Copy] by Rossman, Blow posted to xray structure protein mr determination by apaydin on 2007-01-29 17:32:48 as
	Single-step determination of protein substructures using dipolar couplings: aid to structural genomics. [My Copy] J Am Chem Soc, Vol. 123, No. 38. (26 September 2001), pp. 9490-9491. by M. Zweckstetter, A. Bax posted to structure rdc protein nmr dipolar determination couplings by apaydin on 2007-01-19 16:32:09 as
	Fast High-Resolution Protein Structure Determination by Using Unassigned NMR Data. [My Copy] Angew Chem Int Ed Engl (5 January 2007) by Jegannath Korukottu, Monika Bayrhuber, Pierre Montaville, et al.Vinesh Vijayan, Young-Sang S. Jung, Stefan Becker, Markus Zweckstetter posted to determination nmr protein structure by apaydin on 2007-01-08 21:37:24 as
	Backbone assignment of proteins with known structure using residual dipolar couplings [My Copy] Journal of Biomolecular NMR, Vol. V30, No. 1. (2004), pp. 25-35. by Young-Sang Jung, Markus Zweckstetter posted to backbone homologous mars nmr rdc structure assignments by apaydin on 2006-12-12 19:07:53 as
	From NMR chemical shifts to amino acid types: investigation of the predictive power carried by nuclei. [My Copy] J Biomol NMR, Vol. 30, No. 1. (September 2004), pp. 47-60. by A. Marin, T. E. Malliavin, P. Nicolas, M. A. Delsuc posted to chemical function nmr protein resonance scoring shift structure assignments by apaydin on 2006-05-01 16:56:15 as along with 1 person babakap
	Protein structure prediction using sparse dipolar coupling data. [My Copy] Nucleic Acids Res, Vol. 32, No. 2. (2004), pp. 551-561. by Y. Qu, J. T. Guo, V. Olman, Y. Xu posted to alignment database determination fold homology nmr protein rdc structure by apaydin on 2005-10-05 23:04:04 as

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nmr	188
protein	108
protein_dynamics	106
protein_folding	66
review	52
folding	51
protein_structure_determination	43
assignments	39
structure	39
protein_ligand_binding	34
protein_design	26
rdc	26
prediction	19
protein_protein_binding	18
resonance_assignment	18
tutorial	18
dynamics	16
normal_mode_analysis	15
allostery	14
chemical	14
rate_determination	14
unfolded_state	14
backbone	13
determination	13
phi_value_analysis	13
prm	13
model	12
pfold	12
ligand-protein-binding	11
nma	11
noe	11
misfolding	10
rate	10
shift	10
flexibility	9
molecular_dynamics	9
noe_assignment	9
protein_structure	9
sba	9
x-ray	9
design	8
docking	8
motion	8
sampling	8
voting	8
database	7
function	7
homology	7
molecular	7
probabilistic_roadmaps	7
rate_prediction	7
rotamer_libraries	7
algorithms	6
alignment	6
conformational	6
ensemble	6
go_model	6
planning	6
protein_protein_interactions	6
rotamer	6
srs	6
unassigned_nmr_data	6
based	5
binding	5
chemical_shift	5
enm	5
ensembles	5
markov_chains	5
monte_carlo	5
nvr	5
programming	5
relaxation	5
resonance	5
scoring	5
sidechain	5
side_chain_flexibility	5
structural	5
4d-noesy	4
analysis	4
coarse_grained	4
denatured	4
drug	4
entropy	4
hiv_integrase	4
hydrogen_exchange	4
inverse_kinematics	4
kinetics	4
learning	4
ligand_flexibility	4
network	4
shifts	4
webserver	4
aggregation	3
backbone_flexibility	3
collision	3
consensus	3
denatured_state	3
diffusion	3
elastic	3
energy	3
enzyme_redesign	3
fast	3
fold_determination	3
gnm	3
integer	3
intermediate	3
linear	3
loop	3
molecular_replacement	3
order	3
parameter	3
pathways	3
protein_structure_prediction	3
python	3
rigidity	3
saxs	3
search	3
simulations	3
teaching	3
torsional_angle	3
transition_state_ensemble	3
acbp	2
annealing	2
ant	2
approximation	2
bipartite_matching	2
cap	2
cheminformatics	2
closure	2
colony	2
comparison	2
contacts	2
corex	2
couplings	2
data	2
detection	2
diversity	2
efficient_energy_minimization	2
energy_landscape	2
equilibrium	2
finkelstein	2
fold	2
fragment	2
funnel	2
genetic	2
gpcr	2
hotspot	2
hp	2
hydrogen_bonds	2
incremental	2
index	2
inverse	2
kinematics	2
kstar	2
landscape	2
lattice	2
ligand	2
markov_random_field	2
mass_spectrometry	2
metadynamics	2
methods	2
mfpt	2
milestoning	2
modeling	2
modelling	2
molecular_mechanics	2
native	2
negative_design	2
noise_stability	2
nrps	2
optimization	2
path	2
phi	2
recognition	2
reference	2
replacement	2
secondary	2
simulated	2
solvation	2
solvent_effects	2
space	2
systems_biology	2
tool	2
transition	2
unfolded	2
value	2
visualization	2
xray	2
advice	1
anisotropic	1
anm	1
assembly	1
atomic	1
averaging	1
bayesian_methods	1
belief	1
benchmark	1
binding_site	1
bpti	1
branch_and_bound	1
calculation	1
c-alpha	1
cdc25	1
charges	1
chevron	1
classification	1
cloud_computing	1
comment	1
communication	1
comparing_different_motion_models	1
complete	1
completeness	1
complex	1
component	1
configurational	1
conformational_sampling	1
constant	1
constraint_satisfaction	1
content	1
croem	1
cryo	1
crystallography	1
cyana	1
d-amino-acid	1
ddg	1
denovo	1
density	1
difference_map	1
dimensionality_reduction	1
dipolar	1
disordered	1
disordered_proteins	1
distance_measure	1
drug_design	1
drug_discovery	1
electron_microscopy	1
electrostatics	1
elnemo	1
em	1
empirical	1
empirical_scoring_function	1
energy_function	1
entropy_estimation	1
equation	1
essential_dynamics	1
evolution	1
example	1
exchange	1
experimental	1
experiments	1
fft	1
finding	1
flexibiliy	1
foldamer	1
folder	1
foldtraj	1
free	1
froda	1
functional_classification	1
function_prediction	1
geometric	1
geometry	1
germany	1
go	1
graph_cuts	1
graph_representation	1
graph_theory	1
hardware	1
hausdorff	1
hd_exchange_rate	1
homologous	1
information	1
initiative	1
inverse_folding	1
kariyer	1
kinetic	1
kl_distance	1
lambda	1
library	1
ligand_binding	1
linguistics	1
local	1
long	1
macromolecular	1
manipulation_planning	1
maps	1
mars	1
master	1
md	1
membrane	1
meta	1
metaheuristics	1
mining	1
mirna	1
mle	1
modeller	1
molecular_design	1
motif	1
mr	1
multidomain	1
multipole	1
multiscale	1
non-holonomic	1
opensource	1
opinion	1
optimum	1
organization	1
paramagnetic_quenching	1
partial	1
pattern	1
pca	1
peptides	1
perspectives	1
placement	1
plot	1
pnas	1
pre	1
principal	1
propagation	1
protein_dna_binding	1
protein_stability	1
psi-value-analysis	1
redcat	1
refinement	1
refolding	1
replica	1
repressor	1
research	1
residue	1
ribosome	1
rna	1
robotics	1
rosetta	1
ruby	1
scattering	1
score	1
scoring_function	1
screening	1
sequence	1
sequential	1
sh3	1
simplified	1
software	1
state	1
stochasticity	1
structural_ensemble	1
study	1
supercomputer	1
supramolecular	1
svm	1
synthesis	1
tabu	1
task_planning	1
tensor	1
thermodynamic	1
thermodynamics	1
time	1
tools	1
topology	1
ubiquitin	1
umbrella_sampling	1
waiting_time	1
water_hsqc	1
wavelets	1
wide-angle	1

apaydin's structure [39 articles] Export

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