apaydin's watchlist [more than 800 articles] Export

Recent papers matching apaydin's watchlist criteria

	Article-Level Metrics and the Evolution of Scientific Impact [My Copy] PLoS Biol, Vol. 7, No. 11. (17 November 2009), e1000242. by Cameron Neylon, Shirley Wu posted to no-tag by biehl on 2009-11-25 20:34:24 as along with 30 people and 3 groups janderz8 richardmcgee suze sci91078 rs renatomilani drmarkandersen gjuggler sfalsharif MariaChiaraP hughesro gloriaoriggi Lbenmoha koczy gthorisson tnhh tharris ppgardne stajich archimedian niallhaslam dartar fgibson dullhunk allysonlister kevinemamy neils jobadge AJCann CameronNeylon Parenting 2.0 Journal picks Mycology
	Toward a quantitative theory of intrinsically disordered proteins and their function [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 47. (24 November 2009), pp. 19819-19823. by Jintao Liu, James R. Faeder, Carlos J. Camacho posted to no-tag by biehl on 2009-11-25 20:33:33 as along with 4 people TRHvidsten dfdong samubernard jjray
	SitesIdentify: a protein functional site prediction tool [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 379. by Tracey Bray, Pedro Chan, Salim Bougouffa, Richard Greaves, Andrew Doig, Jim Warwicker posted to structure-analysis prediction_tool prediction_methods by kshameer to the group structural_bioinformatics on 2009-11-20 08:18:54 as along with 1 person renatomilani
	Splitting statistical potentials into meaningful scoring functions: Testing the prediction of near-native structures from decoy conformations. [My Copy] BMC Structural Biology, Vol. 9, No. 1. (2009), 71. by Patrick Aloy, Baldo Oliva posted to no-tag by biehl on 2009-11-18 07:12:45 as
	Integration of evolutionary features for the identification of functionally important residues in major facilitator superfamily transporters. [My Copy] PLoS computational biology, Vol. 5, No. 10. (2 October 2009), e1000522. by Jouhyun Jeon, Jae-Seong S. Yang, Sanguk Kim posted to sequence_conservation correlated_mutations by barry to the group structural_bioinformatics on 2009-10-30 17:47:40 as along with 2 people and 1 group dfdong barriot Bioinformatics
	3D-SURFER: software for high-throughput protein surface comparison and analysis [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2843-2844. by David La, Juan Esquivel-Rodriguez, Vishwesh Venkatraman, et al.Bin Li, Lee Sael, Stephen Ueng, Steven Ahrendt, Daisuke Kihara posted to structure-analysis structure by kshameer to the group structural_bioinformatics on 2009-10-25 07:45:29 as along with 3 people operon renatomilani nickolay
	Algorithms for optimal protein structure alignment [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2751-2756. by Aleksandar Poleksic posted to structure_alignment structure-analysis structure by kshameer to the group structural_bioinformatics on 2009-10-25 07:38:14 as along with 5 people barry operon nickolay kevinzheng1983 neils
	Exploring conformational modes of macromolecular assemblies by multiparticle cryo-EM. [My Copy] Current opinion in structural biology, Vol. 19, No. 5. (18 October 2009), pp. 623-631. by Christian M. Spahn, Pawel A. Penczek posted to review cryo_em bioinf_methods by barry to the group structural_bioinformatics on 2009-10-16 17:11:25 as along with 1 person and 1 group paulschlesinger McCammon
	A force field for virtual atom molecular mechanics of proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 37. (15 September 2009), pp. 15667-15672. by Anil Korkut, Wayne A. Hendrickson posted to nma force_field coarse_grain by barry to the group structural_bioinformatics on 2009-09-28 19:29:39 as along with 1 person and 1 group jmccammon McCammon
	Analysing the origin of long-range interactions in proteins using lattice models [My Copy] BMC Structural Biology, Vol. 9, No. 1. (29 January 2009), 4. by Orly N. Brik, Ron Unger, Amnon Horovitz posted to allostery by barry to the group structural_bioinformatics on 2009-09-25 20:33:04 as along with 2 people and 1 group anuragsethi sobolevnrm McCammon
	Fuzzy molecular surfaces. [My Copy] Journal of biomolecular structure & dynamics, Vol. 9, No. 4. (February 1992), pp. 759-768. by M. E. Agishtein posted to surface solvent accessible by csrocha to the group structural_bioinformatics on 2009-09-20 13:14:06 as
	Solvent accessible surface area and excluded volume in proteins. Analytical equations for overlapping spheres and implications for the hydrophobic effect. [My Copy] Journal of molecular biology, Vol. 178, No. 1. (5 September 1984), pp. 63-89. by T. J. Richmond posted to surface solvent protein desolvation accesible by csrocha to the group structural_bioinformatics on 2009-09-20 12:59:36 as along with 1 person Lombardo_7
	Probing the Dark Matter of Protein Fold Space [My Copy] Vol. 17, No. 9. (9 September 2009), pp. 1244-1252. by William R. Taylor, Vijayalakshmi Chelliah, Siv M. Hollup, James T. MacDonald, Inge Jonassen posted to structure-analysis structure protein by kshameer to the group structural_bioinformatics on 2009-09-11 06:21:40 as along with 1 person and 1 group AliC Orengo Group Journal Picks
	Structural snapshots of conformational changes in a seven-helix membrane protein: lessons from bacteriorhodopsin [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 4. (28 August 2009), pp. 433-439. by Teruhisa Hirai, Sriram Subramaniam, Janos K. Lanyi posted to review bacteriorhodopsin by barry to the group structural_bioinformatics on 2009-09-01 19:30:57 as along with 1 group McCammon
	How citation distortions create unfounded authority: analysis of a citation network. [My Copy] BMJ (Clinical research ed.), Vol. 339, No. jul20_3. (23 July 2009), b2680. by Steven A. Greenberg posted to no-tag by biehl on 2009-08-29 20:39:24 as along with 28 people richardmcgee welliegirl freesci timothee-poisot alhoori CulCog guhjy jrw jclau VGreiff silberbauer Gaetan ysh0315 thegoose dullhunk MichaelBishop cjhall tnhh pawelsobko timflutre pak mfenner Zephyrus ghermy_jr tkeitt dartar stringertheory daforerog
	Single-molecule force spectroscopy distinguishes target binding modes of calmodulin [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 34. (25 August 2009), pp. 14361-14366. by Jan P. Junker, Matthias Rief posted to structure dynamics docking by biehl on 2009-08-29 20:36:43 as
	The origin of allosteric functional modulation: multiple pre-existing pathways. [My Copy] Structure (London, England : 1993), Vol. 17, No. 8. (12 August 2009), pp. 1042-1050. by Antonio del Sol, Chung-Jung J. Tsai, Buyong Ma, Ruth Nussinov posted to review allosteric by barry to the group structural_bioinformatics on 2009-08-17 23:19:29 as along with 4 people and 1 group ubcg08l higueruelo pablocarb okapi McCammon
	Nucleotide-dependent conformational states of actin [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 31. (4 August 2009), pp. 12723-12728. by Jim Pfaendtner, Davide Branduardi, Michele Parrinello, Thomas D. Pollard, Gregory A. Voth posted to actin md_simulation metadynamics by barry to the group structural_bioinformatics on 2009-08-07 00:31:56 as along with 3 people and 1 group pmung okapi anuragsethi McCammon
	Navigating the ribosome's metastable energy landscape. [My Copy] Trends in biochemical sciences (30 July 2009) by James B. Munro, Kevin Y. Sanbonmatsu, Christian M. Spahn, Scott C. Blanchard posted to protein_dynamics review ribosome by barry to the group structural_bioinformatics on 2009-08-06 23:38:31 as along with 2 people and 1 group anuragsethi reyez McCammon
	Think Twice: Understanding the High Potency of Bis(phenyl)methane Inhibitors of Thrombin [My Copy] Journal of Molecular Biology, Vol. 391, No. 3. (21 August 2009), pp. 552-564. by Bernhard Baum, Laveena Muley, Andreas Heine, Michael Smolinski, David Hangauer, Gerhard Klebe posted to drug_design by barry to the group structural_bioinformatics on 2009-07-30 18:41:22 as along with 1 group McCammon
	Computational fragment-based binding site identification by ligand competitive saturation. [My Copy] PLoS computational biology, Vol. 5, No. 7. (10 July 2009), e1000435. by Olgun Guvench, Alexander D. MacKerell posted to drug_design by barry to the group structural_bioinformatics on 2009-07-10 18:13:53 as along with 5 people and 1 group oteri NickFurnham higueruelo TRHvidsten riffraff McCammon
	Establishing a successful bioinformatics core facility team. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000368. by Fran Lewitter, Michael Rebhan posted to career by barry to the group structural_bioinformatics on 2009-06-26 19:02:45 as along with 21 people and 4 groups pekrau GustavoLacerda fgibson daforerog zwang natstreet sobolevnrm orzenil kongl jago druvus kiekyon nuin operon aprasad chrisamiller dswan reyez djkt GeeSharpMinor ppgardne Convention on Knowledge Commons McCammon Bioinformatics Journal picks
	Fruitful and Futile Encounters along the Association Reaction between Proteins [My Copy] Biophysical Journal, Vol. 96, No. 10. (20 May 2009), pp. 4237-4248. by Michal Harel, Alexander Spaar, Gideon Schreiber posted to brownian_dynamics diffusion electrostatics protein_protein by barry to the group structural_bioinformatics on 2009-06-23 23:55:06 as along with 1 person and 1 group jmccammon McCammon
	Conformational changes in switch I of EF-G drive its directional cycling on and off the ribosome. [My Copy] The EMBO journal (18 June 2009) by Cristina Ticu, Roxana Nechifor, Boray Nguyen, Melanie Desrosiers, Kevin S. Wilson posted to ef-g ntpases swi-swii by barry to the group structural_bioinformatics on 2009-06-23 22:21:08 as along with 1 group McCammon
	K-Boost: a scalable algorithm for high-quality clustering of microarray gene expression data. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 6. (June 2009), pp. 859-873. by Filippo Geraci, Mauro Leoncini, Manuela Montangero, Marco Pellegrini, M. Elena Renda posted to clustering by barry to the group structural_bioinformatics on 2009-06-23 22:17:30 as along with 1 person and 1 group jfr Bioinformatics
	Localized thermodynamic coupling between hydrogen bonding and microenvironment polarity substantially stabilizes proteins [My Copy] Nat Struct Mol Biol, Vol. 16, No. 7. (14 July 2009), pp. 684-690. by Jianmin Gao, Daryl A. Bosco, Evan T. Powers, Jeffery W. Kelly posted to hbond protein_structure by barry to the group structural_bioinformatics on 2009-06-23 22:14:38 as along with 1 person and 1 group sobolevnrm McCammon
	FireDock: a web server for fast interaction refinement in molecular docking [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_2. (1 July 2008), pp. W229-232. by Efrat Mashiach, Dina Schneidman-Duhovny, Nelly Andrusier, Ruth Nussinov, Haim J. Wolfson posted to docking_refinement protein_protein by barry to the group structural_bioinformatics on 2009-06-18 20:29:10 as
	FlexServ: an integrated tool for the analysis of protein flexibility [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1709-1710. by Jordi Camps, Oliver Carrillo, Agusti Emperador, et al.Laura Orellana, Adam Hospital, Manuel Rueda, Damjan Cicin-Sain, Marco D'Abramo, Josep L. Gelpi, Modesto Orozco posted to protein-structure structure-analysis web-server by kshameer to the group structural_bioinformatics on 2009-06-17 17:57:34 as along with 2 people flbarroso sobolevnrm
	Replica exchange simulations of transient encounter complexes in protein–protein association [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 35. (2 September 2008), pp. 12855-12860. by Young C. Kim, Chun Tang, G. Marius Clore, Gerhard Hummer posted to protein_protein by barry to the group structural_bioinformatics on 2009-06-11 20:08:20 as along with 2 people and 1 group okapi cactus McCammon
	Relating protein conformational changes to packing efficiency and disorder. [My Copy] Protein science : a publication of the Protein Society, Vol. 18, No. 6. (June 2009), pp. 1230-1240. by N. Bhardwaj, M. Gerstein posted to protein_dynamics by barry to the group structural_bioinformatics on 2009-06-08 04:44:37 as along with 3 people and 1 group skywalkerus02 klexa sobolevnrm McCammon
	Advances and pitfalls of protein structural alignment. [My Copy] Current opinion in structural biology, Vol. 19, No. 3. (27 June 2009), pp. 341-348. by Hitomi Hasegawa, Liisa Holm posted to review structural_bioinformatics structure_comparison by barry to the group structural_bioinformatics on 2009-06-08 04:25:56 as along with 4 people and 2 groups sebk davidalee dgront sobolevnrm OPIG Orengo Group Journal Picks
	The SALAMI protein structure search server [My Copy] Nucl. Acids Res. (22 May 2009), gkp431. by Thomas Margraf, Gundolf Schenk, Andrew E. Torda posted to protein structure structure-analysis by kshameer to the group structural_bioinformatics on 2009-05-27 06:15:51 as along with 1 person neils
	Biophysical dissection of membrane proteins [My Copy] Nature, Vol. 459, No. 7245. (20 May 2009), pp. 344-346. by Stephen H. White posted to membrane_proteins review by barry to the group structural_bioinformatics on 2009-05-21 22:56:03 as along with 9 people and 2 groups amoszlj rph girayenkavi ColumbusLabs viktor21614 kevinchannon hsekiguc sobolevnrm paulschlesinger McCammon baker-group
	Mapping the sequence mutations of the 2009 H1N1 influenza A virus neuraminidase relative to drug and antibody binding sites [My Copy] Biology Direct, Vol. 4 (20 May 2009), 18. by Sebastian, Frank Eisenhaber posted to docking drug-designing drug-target by kshameer to the group structural_bioinformatics on 2009-05-21 15:07:12 as along with 2 people friendpine zwang
	Frequency-resolved communication maps for proteins and other nanoscale materials [My Copy] The Journal of Chemical Physics, Vol. 130, No. 19. (2009), 195101. by David M. Leitner posted to allosteric by barry to the group structural_bioinformatics on 2009-05-21 04:06:23 as along with 2 people and 2 groups biblioteca_babel sobolevnrm McCammon baker-group
	Protein Ionizable Groups: pK Values and Their Contribution to Protein Stability and Solubility [My Copy] Journal of Biological Chemistry, Vol. 284, No. 20. (15 May 2009), pp. 13285-13289. by C. Nick Pace, Gerald R. Grimsley, J. Martin Scholtz posted to pka review by barry to the group structural_bioinformatics on 2009-05-21 04:04:03 as along with 6 people and 2 groups pjkiley scampos klexa nanonan sobolevnrm paulschlesinger McCammon baker-group
	Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures [My Copy] FEBS Journal, Vol. 275, No. 1. (January 2008), pp. 1-21. by Wlodawer, Alexander, Minor, et al. Wladek, Dauter, Zbigniew, Jaskolski, Mariusz posted to protein_structure review by barry to the group structural_bioinformatics on 2009-05-21 04:02:34 as along with 6 people and 2 groups klexa nanonan sobolevnrm ae1054 aisyahrehan rph McCammon baker-group
	Efficient protein depletion by genetically controlled deprotection of a dormant N-degron [My Copy] Mol Syst Biol, Vol. 5 (28 April 2009) by Christof Taxis, Gunter Stier, Roberta Spadaccini, Michael Knop posted to no-tag by biehl on 2009-04-29 05:37:28 as along with 1 person MarcJungbluth
	Dynamic Dysfunction in Dihydrofolate Reductase Results from Antifolate Drug Binding: Modulation of Dynamics within a Structural State [My Copy] Structure, Vol. 17, No. 3. (11 March 2009), pp. 386-394. by Randall V. Mauldin, Mary J. Carroll, Andrew L. Lee posted to allosteric nmr protein_ligand by barry to the group structural_bioinformatics on 2009-04-23 03:06:51 as along with 1 person and 1 group ae1054 McCammon
	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted to protein_dynamics protein_evolution protein_sequence review by barry to the group structural_bioinformatics on 2009-04-23 02:50:03 as along with 20 people and 2 groups dfdong tomhebbron anuragsethi ahmetbakan kevinchannon klexa lauresultan dbikard ibuch ramiro2k pablocarb ramanuja sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang jdoconnell paulschlesinger McCammon baker-group
	Multiscale Modeling of Form and Function [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 208-212. by Adam J. Engler, Patrick O. Humbert, Bernhard Wehrle-Haller, Valerie M. Weaver posted to multiscale review by barry to the group structural_bioinformatics on 2009-04-23 02:49:17 as along with 2 people and 2 groups edws sobolevnrm McCammon baker-group
	Trapping Moving Targets with Small Molecules [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 213-215. by Gregory M. Lee, Charles S. Craik posted to protein_ligand review by barry to the group structural_bioinformatics on 2009-04-23 02:48:45 as along with 6 people and 2 groups guhjy nanonan sobolevnrm pablocarb Fortran friendpine baker-group McCammon
	Conservation of Side-Chain Dynamics Within a Protein Family [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Anthony B. Law, Ernesto J. Fuentes, Andrew L. Lee posted to nmr protein_dynamics by barry to the group structural_bioinformatics on 2009-04-23 02:46:58 as along with 4 people and 2 groups anuragsethi skywalkerus02 pablocarb sobolevnrm McCammon baker-group
	2D molecular graphics: a flattened world of chemistry and biology [My Copy] Brief Bioinform (30 March 2009), bbp013. by Peng Zhou, Zhicai Shang posted to protein_ligand by barry to the group structural_bioinformatics on 2009-04-23 02:21:12 as along with 5 people and 2 groups mijogiffin Zephyrus nanonan sobolevnrm dimka baker-group McCammon
	Hybrid approaches: applying computational methods in cryo-electron microscopy. [My Copy] Current opinion in structural biology (30 March 2009) by Steffen Lindert, Phoebe L L. Stewart, Jens Meiler posted to cryo_em review by barry to the group structural_bioinformatics on 2009-04-21 08:05:13 as along with 1 group McCammon
	ProtSA: a web application for calculating sequence specific protein solvent accessibilities in the unfolded ensemble [My Copy] BMC Bioinformatics, Vol. 10 (08 April 2009), 104. by Jorge, Javier Sancho posted to no-tag by biehl on 2009-04-16 07:24:58 as along with 1 person RamuAnandakrishnan
	Structural biology contributions to tyrosine kinase drug discovery [My Copy] Current Opinion in Cell Biology, Vol. 21, No. 2. (April 2009), pp. 280-287. by Sandra W. Cowan-Jacob, Henrik Möbitz, Doriano Fabbro posted to drug_design kinases review by barry to the group structural_bioinformatics on 2009-04-09 20:09:34 as along with 1 group McCammon
	The interplay of structural information and functional studies in kinase drug design: insights from BCR-Abl. [My Copy] Current opinion in cell biology, Vol. 21, No. 2. (April 2009), pp. 288-295. by M. J. Eck, P. W. Manley posted to drug_design kinases review by barry to the group structural_bioinformatics on 2009-04-09 19:57:53 as along with 1 group McCammon
	Probing the Flexibility of Large Conformational Changes in Protein Structures through Local Perturbations [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (3 April 2009), e1000343. by Bosco K. Ho, David A. Agard posted to md_simulation protein_dynamics torsion_angles by barry to the group structural_bioinformatics on 2009-04-06 17:55:04 as along with 5 people and 2 groups skywalkerus02 dimka operon sobolevnrm bourby baker-group McCammon
	Environment and exposure to solvent of protein atoms. Lysozyme and insulin [My Copy] Journal of Molecular Biology, Vol. 79, No. 2. (15 September 1973), pp. 351-364. by A. Shrake, J. Rupley posted to accessible algorithm protein sas solvent surface by csrocha to the group structural_bioinformatics on 2009-04-04 11:46:18 as along with 1 person mijam

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nmr	188
protein	108
protein_dynamics	106
protein_folding	66
review	52
folding	51
protein_structure_determination	43
assignments	39
structure	39
protein_ligand_binding	34
protein_design	26
rdc	26
prediction	19
protein_protein_binding	18
resonance_assignment	18
tutorial	18
dynamics	16
normal_mode_analysis	15
allostery	14
chemical	14
rate_determination	14
unfolded_state	14
backbone	13
determination	13
phi_value_analysis	13
prm	13
model	12
pfold	12
ligand-protein-binding	11
nma	11
noe	11
misfolding	10
rate	10
shift	10
flexibility	9
molecular_dynamics	9
noe_assignment	9
protein_structure	9
sba	9
x-ray	9
design	8
docking	8
motion	8
sampling	8
voting	8
database	7
function	7
homology	7
molecular	7
probabilistic_roadmaps	7
rate_prediction	7
rotamer_libraries	7
algorithms	6
alignment	6
conformational	6
ensemble	6
go_model	6
planning	6
protein_protein_interactions	6
rotamer	6
srs	6
unassigned_nmr_data	6
based	5
binding	5
chemical_shift	5
enm	5
ensembles	5
markov_chains	5
monte_carlo	5
nvr	5
programming	5
relaxation	5
resonance	5
scoring	5
sidechain	5
side_chain_flexibility	5
structural	5
4d-noesy	4
analysis	4
coarse_grained	4
denatured	4
drug	4
entropy	4
hiv_integrase	4
hydrogen_exchange	4
inverse_kinematics	4
kinetics	4
learning	4
ligand_flexibility	4
network	4
shifts	4
webserver	4
aggregation	3
backbone_flexibility	3
collision	3
consensus	3
denatured_state	3
diffusion	3
elastic	3
energy	3
enzyme_redesign	3
fast	3
fold_determination	3
gnm	3
integer	3
intermediate	3
linear	3
loop	3
molecular_replacement	3
order	3
parameter	3
pathways	3
protein_structure_prediction	3
python	3
rigidity	3
saxs	3
search	3
simulations	3
teaching	3
torsional_angle	3
transition_state_ensemble	3
acbp	2
annealing	2
ant	2
approximation	2
bipartite_matching	2
cap	2
cheminformatics	2
closure	2
colony	2
comparison	2
contacts	2
corex	2
couplings	2
data	2
detection	2
diversity	2
efficient_energy_minimization	2
energy_landscape	2
equilibrium	2
finkelstein	2
fold	2
fragment	2
funnel	2
genetic	2
gpcr	2
hotspot	2
hp	2
hydrogen_bonds	2
incremental	2
index	2
inverse	2
kinematics	2
kstar	2
landscape	2
lattice	2
ligand	2
markov_random_field	2
mass_spectrometry	2
metadynamics	2
methods	2
mfpt	2
milestoning	2
modeling	2
modelling	2
molecular_mechanics	2
native	2
negative_design	2
noise_stability	2
nrps	2
optimization	2
path	2
phi	2
recognition	2
reference	2
replacement	2
secondary	2
simulated	2
solvation	2
solvent_effects	2
space	2
systems_biology	2
tool	2
transition	2
unfolded	2
value	2
visualization	2
xray	2
advice	1
anisotropic	1
anm	1
assembly	1
atomic	1
averaging	1
bayesian_methods	1
belief	1
benchmark	1
binding_site	1
bpti	1
branch_and_bound	1
calculation	1
c-alpha	1
cdc25	1
charges	1
chevron	1
classification	1
cloud_computing	1
comment	1
communication	1
comparing_different_motion_models	1
complete	1
completeness	1
complex	1
component	1
configurational	1
conformational_sampling	1
constant	1
constraint_satisfaction	1
content	1
croem	1
cryo	1
crystallography	1
cyana	1
d-amino-acid	1
ddg	1
denovo	1
density	1
difference_map	1
dimensionality_reduction	1
dipolar	1
disordered	1
disordered_proteins	1
distance_measure	1
drug_design	1
drug_discovery	1
electron_microscopy	1
electrostatics	1
elnemo	1
em	1
empirical	1
empirical_scoring_function	1
energy_function	1
entropy_estimation	1
equation	1
essential_dynamics	1
evolution	1
example	1
exchange	1
experimental	1
experiments	1
fft	1
finding	1
flexibiliy	1
foldamer	1
folder	1
foldtraj	1
free	1
froda	1
functional_classification	1
function_prediction	1
geometric	1
geometry	1
germany	1
go	1
graph_cuts	1
graph_representation	1
graph_theory	1
hardware	1
hausdorff	1
hd_exchange_rate	1
homologous	1
information	1
initiative	1
inverse_folding	1
kariyer	1
kinetic	1
kl_distance	1
lambda	1
library	1
ligand_binding	1
linguistics	1
local	1
long	1
macromolecular	1
manipulation_planning	1
maps	1
mars	1
master	1
md	1
membrane	1
meta	1
metaheuristics	1
mining	1
mirna	1
mle	1
modeller	1
molecular_design	1
motif	1
mr	1
multidomain	1
multipole	1
multiscale	1
non-holonomic	1
opensource	1
opinion	1
optimum	1
organization	1
paramagnetic_quenching	1
partial	1
pattern	1
pca	1
peptides	1
perspectives	1
placement	1
plot	1
pnas	1
pre	1
principal	1
propagation	1
protein_dna_binding	1
protein_stability	1
psi-value-analysis	1
redcat	1
refinement	1
refolding	1
replica	1
repressor	1
research	1
residue	1
ribosome	1
rna	1
robotics	1
rosetta	1
ruby	1
scattering	1
score	1
scoring_function	1
screening	1
sequence	1
sequential	1
sh3	1
simplified	1
software	1
state	1
stochasticity	1
structural_ensemble	1
study	1
supercomputer	1
supramolecular	1
svm	1
synthesis	1
tabu	1
task_planning	1
tensor	1
thermodynamic	1
thermodynamics	1
time	1
tools	1
topology	1
ubiquitin	1
umbrella_sampling	1
waiting_time	1
water_hsqc	1
wavelets	1
wide-angle	1

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