Gene tree discordance, phylogenetic inference and the multispecies coalescent. Export

@article{dengan09, abstract = {The field of phylogenetics is entering a new era in which trees of historical relationships between species are increasingly inferred from multilocus and genomic data. A major challenge for incorporating such large amounts of data into inference of species trees is that conflicting genealogical histories often exist in different genes throughout the genome. Recent advances in genealogical modeling suggest that resolving close species relationships is not quite as simple as applying more data to the problem. Here we discuss the complexities of genealogical discordance and review the issues that new methods for multilocus species tree inference will need to address to account successfully for naturally occurring genomic variability in evolutionary histories.}, author = {Degnan, James H. and Rosenberg, Noah A.}, citeulike-article-id = {4536270}, citeulike-linkout-0 = {http://dx.doi.org/10.1016/j.tree.2009.01.009}, citeulike-linkout-1 = {http://linkinghub.elsevier.com/retrieve/pii/S0169534709000846}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/19307040}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=19307040}, day = {21}, doi = {10.1016/j.tree.2009.01.009}, issn = {0169-5347}, journal = {Trends in ecology \& evolution (Personal edition)}, keywords = {coalescent, congruence, phylogenetics}, month = {March}, number = {6}, pages = {332--340}, posted-at = {2009-06-26 17:03:27}, priority = {2}, title = {Gene tree discordance, phylogenetic inference and the multispecies coalescent.}, url = {http://dx.doi.org/10.1016/j.tree.2009.01.009}, volume = {24}, year = {2009} }

TY - JOUR ID - dengan09 L3 - citeulike-article-id:4536270 N2 - The field of phylogenetics is entering a new era in which trees of historical relationships between species are increasingly inferred from multilocus and genomic data. A major challenge for incorporating such large amounts of data into inference of species trees is that conflicting genealogical histories often exist in different genes throughout the genome. Recent advances in genealogical modeling suggest that resolving close species relationships is not quite as simple as applying more data to the problem. Here we discuss the complexities of genealogical discordance and review the issues that new methods for multilocus species tree inference will need to address to account successfully for naturally occurring genomic variability in evolutionary histories. IS - 6 JF - Trends in ecology & evolution (Personal edition) SN - 0169-5347 EP - 340 TI - Gene tree discordance, phylogenetic inference and the multispecies coalescent. VL - 24 SP - 332 KW - coalescent KW - congruence KW - phylogenetics AU - Degnan, James AU - Rosenberg, Noah PY - 2009/03/21/ UR - http://dx.doi.org/10.1016/j.tree.2009.01.009 ER -